; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0021396 (gene) of Chayote v1 genome

Gene IDSed0021396
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG08:9769070..9770180
RNA-Seq ExpressionSed0021396
SyntenySed0021396
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV91607.1 zf-CCHC_4 domain-containing protein, partial [Cephalotus follicularis]7.8e-0546.27Show/hide
Query:  AEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEG----VLHPFGEELREPNSFFRGEGIDPSG
        A++ W+ + YEKLP+FC  CGRIGH    CS++  NEG    V   +G  LR  N  FRGE   P G
Subjt:  AEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEG----VLHPFGEELREPNSFFRGEGIDPSG

KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-0642.5Show/hide
Query:  MAEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELRE---PNSFFRGEGIDPSGHGSRGRGRGKGRG
        MA+EKW+ +SYEKLPDFC  CGR+GH+V  C  V ++      FG  LR+     S  +G   +     +  RGRG+G+G
Subjt:  MAEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELRE---PNSFFRGEGIDPSGHGSRGRGRGKGRG

KAF7114636.1 hypothetical protein RHSIM_RhsimUnG0081100 [Rhododendron simsii]3.2e-0653.19Show/hide
Query:  EEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELR
        E+ W+   YEKLPDFC  CGR+GH   GC FV  NEG+   +G +LR
Subjt:  EEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELR

KAF7145585.1 hypothetical protein RHSIM_Rhsim04G0242400 [Rhododendron simsii]4.6e-0550Show/hide
Query:  AEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELR
        A+++W+   YEKLPDFC  C RIGH   GC FV   +G    +G ELR
Subjt:  AEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELR

KAG5536301.1 hypothetical protein RHGRI_023918 [Rhododendron griersonianum]1.6e-0550Show/hide
Query:  AEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELR
        A ++W+   YE+LPDFC  CGRIGH   GC FV   +G    +G ELR
Subjt:  AEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELR

TrEMBL top hitse value%identityAlignment
A0A1Q3DGJ4 Zf-CCHC_4 domain-containing protein (Fragment)3.8e-0546.27Show/hide
Query:  AEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEG----VLHPFGEELREPNSFFRGEGIDPSG
        A++ W+ + YEKLP+FC  CGRIGH    CS++  NEG    V   +G  LR  N  FRGE   P G
Subjt:  AEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEG----VLHPFGEELREPNSFFRGEGIDPSG

A0A5D3C0K2 Reverse transcriptase2.0e-0642.5Show/hide
Query:  MAEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELRE---PNSFFRGEGIDPSGHGSRGRGRGKGRG
        MA+EKW+ +SYEKLPDFC  CGR+GH+V  C  V ++      FG  LR+     S  +G   +     +  RGRG+G+G
Subjt:  MAEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELRE---PNSFFRGEGIDPSGHGSRGRGRGKGRG

A0A6J5TXP7 CCHC-type domain-containing protein3.2e-0435.71Show/hide
Query:  VRISYEKLPDFCKGCGRIGHLVDGCSFV--VNNEGVLHPFGEELREPNSFFRGEGIDPSGHGSRGRGRGKGRGSGLVDKAREGVRQERGQEDAENRRG
        +   YE+LPDFC  CGRIGH+V  C FV  +  E    P+G  L       RG  I+P   G +  GR   R  G  +    GV  ++G  D+  + G
Subjt:  VRISYEKLPDFCKGCGRIGHLVDGCSFV--VNNEGVLHPFGEELREPNSFFRGEGIDPSGHGSRGRGRGKGRGSGLVDKAREGVRQERGQEDAENRRG

A0A7J7H4M2 CCHC-type domain-containing protein2.4e-0452.17Show/hide
Query:  EKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELR
        E WV   YEKL DFC  CGRIGH+   C FV   EG    +G +LR
Subjt:  EKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAAGAAAAATGGGTGAGAATCTCTTACGAGAAGCTCCCAGATTTTTGTAAAGGTTGTGGTCGAATAGGACATCTAGTAGATGGATGTTCTTTCGTTGTTAATAA
TGAAGGAGTTCTGCATCCTTTTGGCGAAGAATTGAGAGAACCCAACTCGTTTTTTCGAGGAGAAGGGATCGATCCTTCCGGTCATGGGAGCAGAGGGCGGGGCAGAGGAA
AAGGTAGAGGGTCTGGGTTGGTAGACAAAGCTAGGGAAGGTGTTAGACAAGAAAGAGGTCAAGAAGATGCTGAAAATCGAAGGGGAAAATTCGAAAATGTGGCGACTAAT
TTGTGTGGGGATGATTCTTATCGTGAAAATTACCGGAATCTAAACCGGAAGCAATCTGGGTTGCCGGAAGACGATGGGGGAAGATGCACGGAAGCTTCGATGTCAAGTCG
CCATCAACAGTCGGCGATGGCGACGCTAGGGGACTCCAGCAGGATCAGAACGACTAAGGTGTCAGTGAGTACAGCAGAGGAGAGTGGGAAAGATGGAAAAGAGAATTATT
TCTCAGATTTGGGCCAGGATTCTAGAGGAGCATCGAAAATCGTTGAGGGTTTGAGCATGAAAAAAGTAAATGTGAGGGTTGAACAAGAAAAAGTGGGCCAGAGTCCGAAT
ATTGAGGTGCAGAAGATTAATATTATGGGACAGGGTTCAACGAAATTGGGTGGGCCTGTTGGTAAAGAGATTGTTGGCCCTGGAATTTTTTCTCAGAACAAGGCTTTGTT
GAAGCAAAAAGGCCTAATACTAGAAGAATCTGATCGTGCGAATGGGCAGGATTTATTTGGATCTAAAAAAGGAATTGTGATTAAAGAGCAGACTGATGGAAAAGGTAAAA
ATGGGCATTTAAATTTGGGGAGCTATATTGAAATTAACAAATGCCCAAGCGTCCCTATGATTGAAAGGGAGATTGACAAAAAGAAGAAGGCGAAGTCAGAGATTAAAATA
ATGGAACATCAATTGTTAAAGGCAGCTTTGGATGAACTAGAGGATATTGATAAATCTGTGTCTGAAGAAGTGTCTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAAGAAAAATGGGTGAGAATCTCTTACGAGAAGCTCCCAGATTTTTGTAAAGGTTGTGGTCGAATAGGACATCTAGTAGATGGATGTTCTTTCGTTGTTAATAA
TGAAGGAGTTCTGCATCCTTTTGGCGAAGAATTGAGAGAACCCAACTCGTTTTTTCGAGGAGAAGGGATCGATCCTTCCGGTCATGGGAGCAGAGGGCGGGGCAGAGGAA
AAGGTAGAGGGTCTGGGTTGGTAGACAAAGCTAGGGAAGGTGTTAGACAAGAAAGAGGTCAAGAAGATGCTGAAAATCGAAGGGGAAAATTCGAAAATGTGGCGACTAAT
TTGTGTGGGGATGATTCTTATCGTGAAAATTACCGGAATCTAAACCGGAAGCAATCTGGGTTGCCGGAAGACGATGGGGGAAGATGCACGGAAGCTTCGATGTCAAGTCG
CCATCAACAGTCGGCGATGGCGACGCTAGGGGACTCCAGCAGGATCAGAACGACTAAGGTGTCAGTGAGTACAGCAGAGGAGAGTGGGAAAGATGGAAAAGAGAATTATT
TCTCAGATTTGGGCCAGGATTCTAGAGGAGCATCGAAAATCGTTGAGGGTTTGAGCATGAAAAAAGTAAATGTGAGGGTTGAACAAGAAAAAGTGGGCCAGAGTCCGAAT
ATTGAGGTGCAGAAGATTAATATTATGGGACAGGGTTCAACGAAATTGGGTGGGCCTGTTGGTAAAGAGATTGTTGGCCCTGGAATTTTTTCTCAGAACAAGGCTTTGTT
GAAGCAAAAAGGCCTAATACTAGAAGAATCTGATCGTGCGAATGGGCAGGATTTATTTGGATCTAAAAAAGGAATTGTGATTAAAGAGCAGACTGATGGAAAAGGTAAAA
ATGGGCATTTAAATTTGGGGAGCTATATTGAAATTAACAAATGCCCAAGCGTCCCTATGATTGAAAGGGAGATTGACAAAAAGAAGAAGGCGAAGTCAGAGATTAAAATA
ATGGAACATCAATTGTTAAAGGCAGCTTTGGATGAACTAGAGGATATTGATAAATCTGTGTCTGAAGAAGTGTCTGAATGA
Protein sequenceShow/hide protein sequence
MAEEKWVRISYEKLPDFCKGCGRIGHLVDGCSFVVNNEGVLHPFGEELREPNSFFRGEGIDPSGHGSRGRGRGKGRGSGLVDKAREGVRQERGQEDAENRRGKFENVATN
LCGDDSYRENYRNLNRKQSGLPEDDGGRCTEASMSSRHQQSAMATLGDSSRIRTTKVSVSTAEESGKDGKENYFSDLGQDSRGASKIVEGLSMKKVNVRVEQEKVGQSPN
IEVQKINIMGQGSTKLGGPVGKEIVGPGIFSQNKALLKQKGLILEESDRANGQDLFGSKKGIVIKEQTDGKGKNGHLNLGSYIEINKCPSVPMIEREIDKKKKAKSEIKI
MEHQLLKAALDELEDIDKSVSEEVSE