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Sed0021496 (gene) of Chayote v1 genome

Gene IDSed0021496
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 22-like
Genome locationLG01:67460529..67460840
RNA-Seq ExpressionSed0021496
SyntenySed0021496
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579545.1 Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]8.2e-1580Show/hide
Query:  MAVVAYK----VSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        MAVVA K    V IGV FVLAM  P  A A SL+PAQPPAAS GTSIDQGIAYVLMLLALVLTYIIHSADLSISF
Subjt:  MAVVAYK----VSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

KAG7017004.1 Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]2.4e-1478.67Show/hide
Query:  MAVVAYK----VSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        MAVVA K    V  GV FVLAM  P  A A SL+PAQPPAAS GTSIDQGIAYVLMLLALVLTYIIHSADLSISF
Subjt:  MAVVAYK----VSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

KAG7036000.1 Arabinogalactan peptide 20 [Cucurbita argyrosperma subsp. argyrosperma]4.5e-1374.63Show/hide
Query:  VAYKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        V Y V + VAF LAM FPA AA  SLSPAQPP AS GTS+DQGIAYVLMLLAL+LTYIIH A+L IS
Subjt:  VAYKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

XP_022996281.1 arabinogalactan peptide 22-like [Cucurbita maxima]1.5e-1376.12Show/hide
Query:  VAYKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        V Y V + VAFVLAM FPA AA  SLSPAQPP AS GTS+DQGIAYVLMLLAL+LTYIIH A+L IS
Subjt:  VAYKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

XP_023532560.1 arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]1.5e-1376.12Show/hide
Query:  VAYKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        V Y V + VAFVLAM FPA AA  SLSPAQPP AS GTS+DQGIAYVLMLLAL+LTYIIH A+L IS
Subjt:  VAYKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

TrEMBL top hitse value%identityAlignment
A0A0A0KK44 Uncharacterized protein7.7e-1168.49Show/hide
Query:  MAVVAYKVSI-GVAFVLAMFFPAFAAAV--SLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA KV   G+ FV+A+     ++A   SLSPAQPPA   GTSIDQGIAYVLMLLALVLTYIIHSADL +S
Subjt:  MAVVAYKVSI-GVAFVLAMFFPAFAAAV--SLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

A0A1S3ATI9 arabinogalactan peptide 22-like3.8e-1067.12Show/hide
Query:  MAVVAYKVSI-GVAFVLAMFFPAF--AAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA K+   G+ FV+A+       A A SLSPAQPPA S GTSIDQGIAY LMLLALVLTYIIHSAD  +S
Subjt:  MAVVAYKVSI-GVAFVLAMFFPAF--AAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

A0A5D3C2F1 Arabinogalactan peptide 22-like3.8e-1067.12Show/hide
Query:  MAVVAYKVSI-GVAFVLAMFFPAF--AAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        MAVVA K+   G+ FV+A+       A A SLSPAQPPA S GTSIDQGIAY LMLLALVLTYIIHSAD  +S
Subjt:  MAVVAYKVSI-GVAFVLAMFFPAF--AAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

A0A6J1CXM0 arabinogalactan peptide 22-like1.2e-1174.24Show/hide
Query:  VSIGVAFVLAMFFP--AFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        V++ VAFVL  F P  A A   S+SPAQP A S GTSIDQGIAY LMLLALVLTYIIHSADLSISF
Subjt:  VSIGVAFVLAMFFP--AFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

A0A6J1K4A3 arabinogalactan peptide 22-like7.5e-1476.12Show/hide
Query:  VAYKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        V Y V + VAFVLAM FPA AA  SLSPAQPP AS GTS+DQGIAYVLMLLAL+LTYIIH A+L IS
Subjt:  VAYKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 165.5e-0657.63Show/hide
Query:  AFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        +FV A+   + A A SL+PA P   S GTSIDQGIAY+LM++ALVLTY+IH  D S S+
Subjt:  AFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

Q8L9T8 Arabinogalactan protein 416.1e-0556.9Show/hide
Query:  YKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIH
        + VS  V+ + A+  P  A A S +PA P   S GT+IDQGIAYVLML+ALVLTY+IH
Subjt:  YKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIH

Q9M373 Arabinogalactan protein 202.2e-0763.79Show/hide
Query:  AFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        AFV A+  P FA A SL+PA P   S GTSIDQGIAY+LM++ALVLTY+IH  D S S
Subjt:  AFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 163.9e-0757.63Show/hide
Query:  AFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSISF
        +FV A+   + A A SL+PA P   S GTSIDQGIAY+LM++ALVLTY+IH  D S S+
Subjt:  AFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSISF

AT3G61640.1 arabinogalactan protein 201.6e-0863.79Show/hide
Query:  AFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS
        AFV A+  P FA A SL+PA P   S GTSIDQGIAY+LM++ALVLTY+IH  D S S
Subjt:  AFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSIS

AT5G24105.1 arabinogalactan protein 414.3e-0656.9Show/hide
Query:  YKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIH
        + VS  V+ + A+  P  A A S +PA P   S GT+IDQGIAYVLML+ALVLTY+IH
Subjt:  YKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIH

AT5G53250.1 arabinogalactan protein 222.4e-0450Show/hide
Query:  MAVVAYKVSIGVAFV-LAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIH
        MA + + + I   FV +++     A + S SPA P   S GTSIDQGIAYVLM++AL LTY IH
Subjt:  MAVVAYKVSIGVAFV-LAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGTCGTTGCTTATAAGGTCTCTATTGGTGTGGCTTTTGTTTTGGCTATGTTTTTTCCTGCTTTTGCTGCAGCTGTTTCTTTGTCTCCTGCTCAACCTCCTGCTGC
CAGCTATGGGACAAGCATAGACCAAGGGATTGCATATGTGTTGATGTTGTTGGCGTTGGTACTGACTTACATTATCCATTCAGCGGACCTTTCTATCAGTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGTCGTTGCTTATAAGGTCTCTATTGGTGTGGCTTTTGTTTTGGCTATGTTTTTTCCTGCTTTTGCTGCAGCTGTTTCTTTGTCTCCTGCTCAACCTCCTGCTGC
CAGCTATGGGACAAGCATAGACCAAGGGATTGCATATGTGTTGATGTTGTTGGCGTTGGTACTGACTTACATTATCCATTCAGCGGACCTTTCTATCAGTTTCTGA
Protein sequenceShow/hide protein sequence
MAVVAYKVSIGVAFVLAMFFPAFAAAVSLSPAQPPAASYGTSIDQGIAYVLMLLALVLTYIIHSADLSISF