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Sed0021517 (gene) of Chayote v1 genome

Gene IDSed0021517
OrganismSechium edule (Chayote v1)
DescriptionRrna intron-encoded homing endonuclease
Genome locationLG01:63173475..63173716
RNA-Seq ExpressionSed0021517
SyntenySed0021517
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD4586614.1 hypothetical protein E3N88_24215 [Mikania micrantha]1.6e-1262.12Show/hide
Query:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHAIASSAYQKW
        MGGGAW FLVGGAICLVN VNE+DL+LLTSYAE            VCDALRCSGPHA  +  + ++
Subjt:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHAIASSAYQKW

KAE8637436.1 hypothetical protein CSA_004614 [Cucumis sativus]1.3e-1273.68Show/hide
Query:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA
        MGGGAW FLVGGAICLVN VNERDL+LLTSYAE            VCDALRCSGPHA
Subjt:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA

KAF9662358.1 hypothetical protein SADUNF_Sadunf18G0044900 [Salix dunnii]3.3e-1375.44Show/hide
Query:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA
        MGGGAWSFLVGGAICLVN VNERDL+LLTSYAE            VCDALRCSGPHA
Subjt:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA

KAF9672699.1 hypothetical protein SADUNF_Sadunf11G0071000 [Salix dunnii]2.8e-1271.93Show/hide
Query:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA
        MGGGAW FLVGGAIC+VN VNERDL+LLTSYAE            VCDALRCSGPHA
Subjt:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA

KAG5568993.1 hypothetical protein H5410_064037 [Solanum commersonii]1.3e-1273.68Show/hide
Query:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA
        MGGGAW FLVGGAICLVN VNERDL+LLTSYAE            VCDALRCSGPHA
Subjt:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA

TrEMBL top hitse value%identityAlignment
A0A0D2ZQ56 Uncharacterized protein1.0e-1260.56Show/hide
Query:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHAIASSAYQK---WPT
        MGGGAW FLVGGAICLVN VNERDL+LLTSY              VCDALRCSGPHA  +  + +   WPT
Subjt:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHAIASSAYQK---WPT

A0A5N6NFM9 Uncharacterized protein7.9e-1362.12Show/hide
Query:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHAIASSAYQKW
        MGGGAW FLVGGAICLVN VNE+DL+LLTSYAE            VCDALRCSGPHA  +  + ++
Subjt:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHAIASSAYQKW

A0A6A5L666 Uncharacterized protein1.8e-1271.93Show/hide
Query:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA
        MGGGAW FLVGGAICLVN VNERDL+LLTSY E            VCDALRCSGPHA
Subjt:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA

A0A6A5L6D6 Uncharacterized protein1.8e-1271.93Show/hide
Query:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA
        MGGGAW FLVGGAICLVN VNERDL+LLTSY E            VCDALRCSGPHA
Subjt:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA

A0A6A5L9L7 Uncharacterized protein1.8e-1271.93Show/hide
Query:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA
        MGGGAW FLVGGAICLVN VNERDL+LLTSY E            VCDALRCSGPHA
Subjt:  MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGGTGGTGCATGGTCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTTCGTTAACGAACGAGACCTCAACCTGCTAACTAGCTATGCAGAGGGATCCCTCCG
CCAGGGAAGTTTGAGGCAATATCAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCTATCGCCAGTTCTGCTTACCAAAAATGGCCTACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGGTGGTGCATGGTCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTTCGTTAACGAACGAGACCTCAACCTGCTAACTAGCTATGCAGAGGGATCCCTCCG
CCAGGGAAGTTTGAGGCAATATCAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCTATCGCCAGTTCTGCTTACCAAAAATGGCCTACTTAG
Protein sequenceShow/hide protein sequence
MGGGAWSFLVGGAICLVNFVNERDLNLLTSYAEGSLRQGSLRQYQVCDALRCSGPHAIASSAYQKWPT