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Sed0021566 (gene) of Chayote v1 genome

Gene IDSed0021566
OrganismSechium edule (Chayote v1)
DescriptionSANT domain-containing protein
Genome locationLG13:21547687..21549110
RNA-Seq ExpressionSed0021566
SyntenySed0021566
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60114.2 hypothetical protein Csa_000871 [Cucumis sativus]1.6e-3187.06Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC
        MASSS+TST  F+SSWTKKENKKFEEALAF+D+DTPDRFEKVA+AVGGGKTAEEARRLYELLVRDV+KIEAGQVQIP YKN+ GC
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC

XP_008466554.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]1.6e-3187.06Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC
        MASSS+TST  F+SSWTKKENKKFEEALAF+D+DTPDRFEKVA+AVGGGKTAEEARRLYELLVRDV+KIEAGQVQIP YKN+ GC
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]3.6e-3189.02Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNS
        MASSS+TS R F+SSWTK+ENKKFEEALAFYDQDTPDRFEKVA+AVGGGKTAEEARRLYELL RDVKKIEAGQVQIP YKN+
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNS

XP_022936283.1 protein RADIALIS-like 3 [Cucurbita moschata]1.4e-3088.37Show/hide
Query:  MASSSLTS-TRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC
        MASSS+TS  R F+SSWTKKENKKFEEALA+YDQDTPDRFEKVA+AVGGGKTAEEARRLYELLVRDVKKIEAGQVQIP YKN  GC
Subjt:  MASSSLTS-TRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]7.6e-2985.19Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKN
        MASSS T+   F+SSWTK+ENKKFEEALAFYDQDTPDRFE VA+AVGGGKTAEE RRLYELLVRDV KIEAGQVQIP YKN
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKN

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein7.9e-3287.06Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC
        MASSS+TST  F+SSWTKKENKKFEEALAF+D+DTPDRFEKVA+AVGGGKTAEEARRLYELLVRDV+KIEAGQVQIP YKN+ GC
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC

A0A1S3CRN8 protein RADIALIS-like 47.9e-3287.06Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC
        MASSS+TST  F+SSWTKKENKKFEEALAF+D+DTPDRFEKVA+AVGGGKTAEEARRLYELLVRDV+KIEAGQVQIP YKN+ GC
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC

A0A5A7TE80 Protein RADIALIS-like 37.9e-3287.06Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC
        MASSS+TST  F+SSWTKKENKKFEEALAF+D+DTPDRFEKVA+AVGGGKTAEEARRLYELLVRDV+KIEAGQVQIP YKN+ GC
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC

A0A6J1DP29 protein RADIALIS-like 41.8e-3189.02Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNS
        MASSS+TS R F+SSWTK+ENKKFEEALAFYDQDTPDRFEKVA+AVGGGKTAEEARRLYELL RDVKKIEAGQVQIP YKN+
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNS

A0A6J1FCU5 protein RADIALIS-like 36.7e-3188.37Show/hide
Query:  MASSSLTS-TRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC
        MASSS+TS  R F+SSWTKKENKKFEEALA+YDQDTPDRFEKVA+AVGGGKTAEEARRLYELLVRDVKKIEAGQVQIP YKN  GC
Subjt:  MASSSLTS-TRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGC

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.7e-1855.56Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGCKRLRI
        MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ S GC   R+
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGCKRLRI

Q1G3C4 Protein RADIALIS-like 41.0e-1554.88Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNS
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+A+AV GGK+ EE +R YELL+RDV  IE+G+   P Y+N+
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNS

Q6NNN0 Protein RADIALIS-like 31.4e-1759.76Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNS
        MAS+S++S+    +SWT+KENK FE ALA YDQDTPDR+  VA+AV GGK+AEE RR YELL+RDV  IE+G+   P Y+++
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNS

Q8GW75 Protein RADIALIS-like 54.9e-1556.25Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYK
        MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYK

Q9SIJ5 Protein RADIALIS-like 21.1e-1759.52Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRG
        MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VA+AV GGKT EEA+R Y+LLVRD++ IE G V  P YK + G
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRG

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.5e-1656.25Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYK
        MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYK

AT1G75250.1 RAD-like 63.9e-1555Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYK
        MAS+S +S     S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV D+  IE G+V +P YK
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYK

AT2G18328.1 RAD-like 47.1e-1754.88Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNS
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+A+AV GGK+ EE +R YELL+RDV  IE+G+   P Y+N+
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNS

AT2G21650.1 Homeodomain-like superfamily protein7.6e-1959.52Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRG
        MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VA+AV GGKT EEA+R Y+LLVRD++ IE G V  P YK + G
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRG

AT4G39250.1 RAD-like 12.6e-1955.56Show/hide
Query:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGCKRLRI
        MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ S GC   R+
Subjt:  MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGCKRLRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCGAGCTCTCTCACGTCGACACGTGTCTTCCACTCGTCGTGGACGAAGAAAGAAAACAAGAAGTTCGAGGAGGCATTGGCGTTCTATGACCAGGACACGCCGGA
CCGTTTCGAGAAAGTGGCGCAGGCTGTTGGTGGTGGGAAGACAGCTGAGGAAGCAAGAAGGCTCTACGAGTTGCTAGTGCGAGATGTCAAGAAAATCGAAGCTGGTCAAG
TTCAAATACCATGCTACAAGAACAGCAGAGGATGTAAGAGGTTACGTATTCAATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCGAGCTCTCTCACGTCGACACGTGTCTTCCACTCGTCGTGGACGAAGAAAGAAAACAAGAAGTTCGAGGAGGCATTGGCGTTCTATGACCAGGACACGCCGGA
CCGTTTCGAGAAAGTGGCGCAGGCTGTTGGTGGTGGGAAGACAGCTGAGGAAGCAAGAAGGCTCTACGAGTTGCTAGTGCGAGATGTCAAGAAAATCGAAGCTGGTCAAG
TTCAAATACCATGCTACAAGAACAGCAGAGGATGTAAGAGGTTACGTATTCAATTTTGA
Protein sequenceShow/hide protein sequence
MASSSLTSTRVFHSSWTKKENKKFEEALAFYDQDTPDRFEKVAQAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPCYKNSRGCKRLRIQF