; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0021597 (gene) of Chayote v1 genome

Gene IDSed0021597
OrganismSechium edule (Chayote v1)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Genome locationLG09:40240486..40245626
RNA-Seq ExpressionSed0021597
SyntenySed0021597
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059439.1 protein WHI4 [Cucumis melo var. makuwa]2.9e-12689.35Show/hide
Query:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
        MAH PYDPYYLY+  P+P Y DRSNINTLFISGLPDDV+ REIHNLFRRR GFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
Subjt:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH

Query:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV
        IELARSNSRRKHKPGGGAYVVIDKRK+TD+N+QETSSDDGGSEPDEPSKK +QSN+AV T     SAPYE HEKND G CSTLFIANLGPNCNEDELKEV
Subjt:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV

Query:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS
        L KYPGFNVLKLRAKSGMPVAFADFE+IEQASKV+EELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS

KAG7025857.1 RNA-binding protein with multiple splicing 2 [Cucurbita argyrosperma subsp. argyrosperma]6.8e-12890.49Show/hide
Query:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
        MAHQPYDPYYLYH  P+ NY DR+NINTLFISGLPDDV+ REIHNLFRRR GFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
Subjt:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH

Query:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV
        IELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSKKTEQSN+AV       SAPYE HEKND G CSTLFIANLGPNCNEDELKEV
Subjt:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV

Query:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS
        LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS

XP_022964622.1 protein WHI4 [Cucurbita moschata]6.8e-12890.49Show/hide
Query:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
        MAHQPYDPYYLYH  P+ NY DR+NINTLFISGLPDDV+ REIHNLFRRR GFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
Subjt:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH

Query:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV
        IELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSKKTEQSN+AV       SAPYE HEKND G CSTLFIANLGPNCNEDELKEV
Subjt:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV

Query:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS
        LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS

XP_023000385.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita maxima]7.6e-12790.11Show/hide
Query:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
        MAHQ YDPYYLYH  P+ NY DR+NINTLFISGLPDDV+ REIHNLFRRR GFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
Subjt:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH

Query:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV
        IELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSKKTEQSN+AV       SAPYE HEKND G CSTLFIANLGPNCNEDELKEV
Subjt:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV

Query:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS
        LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS

XP_023513427.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]8.9e-12890.49Show/hide
Query:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
        MAHQPYDPYYLYH  P+ NY DR+NINTLFISGLPDDV+ REIHNLFRRR GFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
Subjt:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH

Query:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV
        IELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSKKTEQSN+AV       SAPYE HEKND G CSTLFIANLGPNCNEDELKEV
Subjt:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV

Query:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS
        LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS

TrEMBL top hitse value%identityAlignment
A0A0A0K772 Uncharacterized protein6.9e-12688.97Show/hide
Query:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
        MAH PYDPYYLY+  P+P Y +RSNINTLFISGLPDDV+ REIHNLFRRR GFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
Subjt:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH

Query:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV
        IELARSNSRRKHKPGGGAYVVIDKRK+TD+N+QETSSDDGGSEPDEPSKK +QSN+AV T     SAPYE HEKND G CSTLFIANLGPNCNEDELKEV
Subjt:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV

Query:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS
        L KYPGFNVLKLRAKSGMPVAFADFE+IEQASKV+EELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A5A7V0X3 Protein WHI41.4e-12689.35Show/hide
Query:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
        MAH PYDPYYLY+  P+P Y DRSNINTLFISGLPDDV+ REIHNLFRRR GFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
Subjt:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH

Query:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV
        IELARSNSRRKHKPGGGAYVVIDKRK+TD+N+QETSSDDGGSEPDEPSKK +QSN+AV T     SAPYE HEKND G CSTLFIANLGPNCNEDELKEV
Subjt:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV

Query:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS
        L KYPGFNVLKLRAKSGMPVAFADFE+IEQASKV+EELQGSVLPSSDRGGMHIEYARSKMRKS
Subjt:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A6J1D3Z3 uncharacterized protein LOC111017052 isoform X14.0e-12688.97Show/hide
Query:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
        MAHQPYDPYYLYH  P+PNY DRSNINTLFISGLPDDV+ REIHNLFRRR GFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
Subjt:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH

Query:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV
        IELARSNSRRKHKPGGGAYVVIDKRK++D NAQETSSDDGGSEPDEPSKKTE+S++AV T     S PYE HEK D G CSTLFIANLGPNCNEDEL EV
Subjt:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV

Query:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS
        LSKYPGFNVLKLRAKSGMPVAFADFEE+EQA KV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A6J1HI97 protein WHI43.3e-12890.49Show/hide
Query:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
        MAHQPYDPYYLYH  P+ NY DR+NINTLFISGLPDDV+ REIHNLFRRR GFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
Subjt:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH

Query:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV
        IELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSKKTEQSN+AV       SAPYE HEKND G CSTLFIANLGPNCNEDELKEV
Subjt:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV

Query:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS
        LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS

A0A6J1KI66 U2 small nuclear ribonucleoprotein B'' 23.7e-12790.11Show/hide
Query:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
        MAHQ YDPYYLYH  P+ NY DR+NINTLFISGLPDDV+ REIHNLFRRR GFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH
Subjt:  MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLH

Query:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV
        IELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSKKTEQSN+AV       SAPYE HEKND G CSTLFIANLGPNCNEDELKEV
Subjt:  IELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVAT-----SAPYE-HEKNDDGRCSTLFIANLGPNCNEDELKEV

Query:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS
        LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  LSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a9.0e-1442.86Show/hide
Query:  INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D++PRE++ LFR  +G++   +K T +  Q V F TF +   A  A +ALNG++FDP+S   L +E A++N++
Subjt:  INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q6ZRY4 RNA-binding protein with multiple splicing 25.8e-1341.67Show/hide
Query:  INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D++PRE++ LFR  +G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q8VC52 RNA-binding protein with multiple splicing 25.8e-1341.67Show/hide
Query:  INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D++PRE++ LFR  +G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9W6I1 RNA-binding protein with multiple splicing 22.6e-1341.67Show/hide
Query:  INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D++PRE++ LFR  +G++   +K T +  Q V F TF +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9YGP5 RNA-binding protein with multiple splicing 25.3e-1440.66Show/hide
Query:  NYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        N      + TLF+SGLP D++PRE++ LFR  +G++   +K T +  Q V F TF N   A  A +ALNG++FDP++   L +E A++N++
Subjt:  NYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.1e-3838.19Show/hide
Query:  PPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKP
        P   + G R  + TLF++GLP+DV+PREI+NLFR   G+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K   
Subjt:  PPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKP

Query:  GGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVATSAPYEHEKNDDGR-------------CSTLFIANLGPNCNEDELKEVLSKYPGF
            +  + K K     +  T+++ G      P   +   N    + A  +   N  GR             C TLFIAN+GPNC E EL +V S+  GF
Subjt:  GGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVATSAPYEHEKNDDGR-------------CSTLFIANLGPNCNEDELKEVLSKYPGF

Query:  NVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGG-MHIEYARSKM
          LK++   G PVAF DF+++  +S+ +  LQG+VL SS  G  + ++YARS+M
Subjt:  NVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGG-MHIEYARSKM

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.0e-3638.02Show/hide
Query:  PPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKP
        P   + G R  + TLF++GLP+DV+PREI+NLFR   G+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K   
Subjt:  PPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKP

Query:  GGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVATSAPYEHEKNDDGR-------------CSTLFIANLGPNCNEDELKEVLSKYPGF
            +  + K K     +  T+++ G      P   +   N    + A  +   N  GR             C TLFIAN+GPNC E EL +V S+  GF
Subjt:  GGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVATSAPYEHEKNDDGR-------------CSTLFIANLGPNCNEDELKEVLSKYPGF

Query:  NVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRG
          LK++   G PVAF DF+++  +S+ +  LQG+VL SS  G
Subjt:  NVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRG

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein7.7e-3737.65Show/hide
Query:  PPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKP
        P   + G R  + TLF++GLP+DV+PREI+NLFR   G+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K   
Subjt:  PPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKP

Query:  GGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVATSAPYEHEKNDDGR-------------CSTLFIANLGPNCNEDELKEVLSKYPGF
            +  + K K     +  T+++ G      P   +   N    + A  +   N  GR             C TLFIAN+GPNC E EL +V S+  GF
Subjt:  GGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVATSAPYEHEKNDDGR-------------CSTLFIANLGPNCNEDELKEVLSKYPGF

Query:  NVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRK
          LK++   G PVAF DF+++  +S+ +  LQG+VL SS  G +    +R  MRK
Subjt:  NVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRK

AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.8e-7956.31Show/hide
Query:  HQPYDPYYLY-------HHPPE-PNYGDRSN-INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQ------------------VVAFATFYN
        HQPYDP+Y+Y       H PP+ P   D    INTLF+SGLP+DV+ REIHNLFRRR GF+SCQLKYTGRG+Q                  VVAFATF +
Subjt:  HQPYDPYYLY-------HHPPE-PNYGDRSN-INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQ------------------VVAFATFYN

Query:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE-------PSKKTEQSNKAVATSAPYEH--
        H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +PG G YVVID R +  S +Q+  SD+G S+PDE        S K   + K+ A S P     
Subjt:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE-------PSKKTEQSNKAVATSAPYEH--

Query:  ------EKNDDG-----RCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIE
              EK  +G      CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEEIEQA+  +  LQG++L SSDRGGMHIE
Subjt:  ------EKNDDG-----RCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIE

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein3.7e-8761.13Show/hide
Query:  HQPYDPYYLY-------HHPPE-PNYGDRSN-INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP
        HQPYDP+Y+Y       H PP+ P   D    INTLF+SGLP+DV+ REIHNLFRRR GF+SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDP
Subjt:  HQPYDPYYLY-------HHPPE-PNYGDRSN-INTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP

Query:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE-------PSKKTEQSNKAVATSAPYEH--------EKNDDG-----R
        Q+GS LHIELARSNSRRK +PG G YVVID R +  S +Q+  SD+G S+PDE        S K   + K+ A S P           EK  +G      
Subjt:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE-------PSKKTEQSNKAVATSAPYEH--------EKNDDG-----R

Query:  CSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRK
        CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEEIEQA+  +  LQG++L SSDRGGMHIEYARSKMRK
Subjt:  CSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCACCAGCCTTACGATCCTTACTATCTGTATCATCATCCACCGGAGCCGAACTACGGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGCCTCCCCGACGA
CGTCCAACCTCGCGAGATTCACAACCTCTTCCGTCGCCGCCAAGGCTTCGACTCCTGCCAGCTCAAGTACACTGGCCGCGGCAACCAGGTTGTGGCATTTGCTACCTTCT
ACAATCATCAATCAGCTGTGACCGCACTTCATGCATTAAATGGTGTCAAGTTTGACCCACAGAGTGGATCCGTTCTGCATATTGAACTTGCTAGGTCGAACTCTAGGAGA
AAGCATAAACCAGGCGGTGGAGCGTATGTTGTGATAGATAAAAGGAAAAGAACTGACTCCAATGCTCAGGAAACATCAAGTGATGATGGTGGCAGTGAGCCAGATGAACC
ATCAAAGAAGACCGAACAAAGCAACAAGGCTGTGGCGACTTCTGCTCCATATGAGCATGAAAAGAATGATGATGGACGATGCTCCACTTTGTTTATCGCAAATCTGGGTC
CAAACTGCAATGAAGATGAACTAAAGGAAGTCTTGTCCAAATATCCTGGATTCAACGTGCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAG
GAAATCGAACAAGCTAGCAAGGTCATTGAGGAGCTTCAGGGCAGCGTGCTACCGTCATCAGACCGCGGCGGCATGCATATAGAGTACGCTCGGTCGAAAATGAGGAAGTC
TTAG
mRNA sequenceShow/hide mRNA sequence
TATAAATTAGCAAAAATGAATAGAAAAGAAAACAAACCCTGTTGGACGCGAAACTTGGATCGATTTGGCGTTGGGGATTTCAGCGATGGCTCACCAGCCTTACGATCCTT
ACTATCTGTATCATCATCCACCGGAGCCGAACTACGGTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGCCTCCCCGACGACGTCCAACCTCGCGAGATTCACAAC
CTCTTCCGTCGCCGCCAAGGCTTCGACTCCTGCCAGCTCAAGTACACTGGCCGCGGCAACCAGGTTGTGGCATTTGCTACCTTCTACAATCATCAATCAGCTGTGACCGC
ACTTCATGCATTAAATGGTGTCAAGTTTGACCCACAGAGTGGATCCGTTCTGCATATTGAACTTGCTAGGTCGAACTCTAGGAGAAAGCATAAACCAGGCGGTGGAGCGT
ATGTTGTGATAGATAAAAGGAAAAGAACTGACTCCAATGCTCAGGAAACATCAAGTGATGATGGTGGCAGTGAGCCAGATGAACCATCAAAGAAGACCGAACAAAGCAAC
AAGGCTGTGGCGACTTCTGCTCCATATGAGCATGAAAAGAATGATGATGGACGATGCTCCACTTTGTTTATCGCAAATCTGGGTCCAAACTGCAATGAAGATGAACTAAA
GGAAGTCTTGTCCAAATATCCTGGATTCAACGTGCTCAAATTGCGTGCCAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGAAATCGAACAAGCTAGCAAGGTCA
TTGAGGAGCTTCAGGGCAGCGTGCTACCGTCATCAGACCGCGGCGGCATGCATATAGAGTACGCTCGGTCGAAAATGAGGAAGTCTTAGATGTCAACAGTTGCGAGGTAT
GCTTGCTTGTGGCTGCTGTTATGAAGTTTTGTGACATTCATCAGTCTGGTATTTCTTCAAGTGCTTGCAAACTACATTTCACATTACTCCTTGGATAATCAATAGATTAT
GTACCGATAAATTCGTGCTTATTTTAACTAAAAAAGTATAGAGTTTAGCATTGTTAAGTGTTGGAATTCGTTTCCTTTTTAGATTTTTTTTTTTTGAAACAAGGGTAACC
ACGTCCGTTCTTAGGCTAGACACTGGGAGATATCGAAAGAGTAATTGAGTCTTGAACCTGGGACCTTAAAGAGAGCATACCTTCAAATCTCAAGTCTTCAACCACTGTGC
CACCCCTTGAGCACGTTTTCTTTTTAGATTTTTAGTTTGAAGAAGGCTCTTGATTTGTAGTAACTTTCCAAGCTAAATAAGGAATTGACTTTAGGAGTCTTAGTTTAACG
AGCAAAGAAGAGAGGGTTTGGTTGTCATAGATTTTAGGTTGTTCATTTGGTAGTTTGATATGTATGTTATCGTGAAACTCAATTATAAATGATTCTATTTGAGGATTTGT
TAAAAAAATTCCAGTTTGTGGTCGGGCTAGCTTATGCGCACCTTCACTTTTCTTTCCCACTTGATTCTACAAACAAGGATGTGTCCCACTTTAATTTGAGCTTGTGTTCG
GGTTAGTTTATGCACACTTCGAGGAGAGTTTGTTCATTGTAATACATCAAAAGTACGAATGAAAATAGATCCAACAATCATGAACATTTCCTTCTTTTGGAAAATATCCT
ATCCCCCTCGTAGAGAGTTCAAAATTCTAATTTGTTTCAATTTTCGAAATAGAAATGATATCATTTTGTAATGCAACATCGGTGGTGAAAACGGATGATTGTTTGAGG
Protein sequenceShow/hide protein sequence
MAHQPYDPYYLYHHPPEPNYGDRSNINTLFISGLPDDVQPREIHNLFRRRQGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRR
KHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKKTEQSNKAVATSAPYEHEKNDDGRCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFE
EIEQASKVIEELQGSVLPSSDRGGMHIEYARSKMRKS