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Sed0021606 (gene) of Chayote v1 genome

Gene IDSed0021606
OrganismSechium edule (Chayote v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationLG10:30452186..30453187
RNA-Seq ExpressionSed0021606
SyntenySed0021606
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586405.1 hypothetical protein SDJN03_19138, partial [Cucurbita argyrosperma subsp. sororia]1.6e-6285Show/hide
Query:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE
        M+M WSGGDWMCGVCEH+NFKKREACQRCGYPKYGGPDP+TYE  KT ++LAGDWYC+CGAHNYASR +C+RCN+YKS DIGALPGWKSGDWICNR+GCE
Subjt:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE

Query:  THNYASRMECYKCQTPRAFG
        THNYASRMECYKC+TPR FG
Subjt:  THNYASRMECYKCQTPRAFG

XP_022937997.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita moschata]3.5e-6285Show/hide
Query:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE
        M+M WSGGDWMCGVCEH+NFKKREACQRCGYPKYGGPDP+TYE  KT ++LAGDWYC+CGAHNYASRS+C+RCN+YKS DI ALPGWKSGDWICNR+GCE
Subjt:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE

Query:  THNYASRMECYKCQTPRAFG
        THNYASRMECYKC+TPR FG
Subjt:  THNYASRMECYKCQTPRAFG

XP_022966014.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima]1.1e-6386.67Show/hide
Query:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE
        M+M WSGGDWMCGVCEH+NFKKREACQRCGYPKYGGPDPTTYE  KT ++LAGDWYC+CGAHNYASRS+C+RCN+YKS DIGALPGWKSGDWICNR+GCE
Subjt:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE

Query:  THNYASRMECYKCQTPRAFG
        THNYASRMECYKC+TPR FG
Subjt:  THNYASRMECYKCQTPRAFG

XP_023538268.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo]3.2e-6385.83Show/hide
Query:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE
        M+M WSGGDWMCGVCEH+NFKKREACQRCGYPKYGGPDP+TYE  KT ++LAGDWYC+CGAHNYASRS+C+RCN+YKS DIGALPGWKSGDWICNR+GCE
Subjt:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE

Query:  THNYASRMECYKCQTPRAFG
        THNYASRMECYKC+TPR FG
Subjt:  THNYASRMECYKCQTPRAFG

XP_038890693.1 zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]1.6e-6281.3Show/hide
Query:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQ---TKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRM
        M+M WSGGDWMCGVCEH+NFKKREACQRCGYPKYGGPDP+ Y+Q   +KT ++LAGDWYCNCGAHNYASRSTC+RCN+YK++D+GALPGWKSGDWIC R+
Subjt:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQ---TKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRM

Query:  GCETHNYASRMECYKCQTPRAFG
        GCETHNYASRMECYKC+ PR FG
Subjt:  GCETHNYASRMECYKCQTPRAFG

TrEMBL top hitse value%identityAlignment
A0A0A0LIX1 Uncharacterized protein3.8e-6275Show/hide
Query:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQ------TKTQQLLAGDWYCNCGAHNYASRSTCFRCNS--YKSVDIGALPGWKSGDW
        M+M WSGGDWMCGVCEH+NFKKREACQRCGYPKYGGPDPTTY+Q        T ++LAGDWYCNCGAHNYASRS+C++CNS  YKS+DIGALPGWKSGDW
Subjt:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQ------TKTQQLLAGDWYCNCGAHNYASRSTCFRCNS--YKSVDIGALPGWKSGDW

Query:  ICNRMGCETHNYASRMECYKCQTPRAFGKLIFEEPLMMLI
        IC+R+GCETHNYASRMECYKC+ PR FGK I    L + +
Subjt:  ICNRMGCETHNYASRMECYKCQTPRAFGKLIFEEPLMMLI

A0A1S3C6B6 uncharacterized RNA-binding protein C17H9.04c8.5e-6280.47Show/hide
Query:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQ------TKTQQLLAGDWYCNCGAHNYASRSTCFRCNS--YKSVDIGALPGWKSGDW
        M+M WSGGDWMCGVCEH+NFKKREACQRCGYPKYGGPDP+TY+Q        T ++LAGDWYCNCGAHNYASRS+C+RCNS  YKS+DIGALPGWKSGDW
Subjt:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQ------TKTQQLLAGDWYCNCGAHNYASRSTCFRCNS--YKSVDIGALPGWKSGDW

Query:  ICNRMGCETHNYASRMECYKCQTPRAFG
        IC+R+GCETHNYASRMECYKC+TPR FG
Subjt:  ICNRMGCETHNYASRMECYKCQTPRAFG

A0A6J1CPG4 uncharacterized RNA-binding protein C17H9.04c-like1.6e-6084Show/hide
Query:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKT--QQLLAGDWYCNCGAHNYASRSTCFRCNS--YKSVD-IGALPGWKSGDWICN
        M+M WSGGDWMCGVCEH+NFKKREACQRCGYPKYGGPDPTTYE  KT  Q LLAGDWYCNCGAHNYASRS C+RCNS  +K+VD IGALPGWKSGDWIC 
Subjt:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKT--QQLLAGDWYCNCGAHNYASRSTCFRCNS--YKSVD-IGALPGWKSGDWICN

Query:  RMGCETHNYASRMECYKCQTPRAFG
        R+GCE HNYASRMECYKC TPR FG
Subjt:  RMGCETHNYASRMECYKCQTPRAFG

A0A6J1FCS1 zinc finger Ran-binding domain-containing protein 2-like1.7e-6285Show/hide
Query:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE
        M+M WSGGDWMCGVCEH+NFKKREACQRCGYPKYGGPDP+TYE  KT ++LAGDWYC+CGAHNYASRS+C+RCN+YKS DI ALPGWKSGDWICNR+GCE
Subjt:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE

Query:  THNYASRMECYKCQTPRAFG
        THNYASRMECYKC+TPR FG
Subjt:  THNYASRMECYKCQTPRAFG

A0A6J1HSH3 zinc finger Ran-binding domain-containing protein 2-like5.3e-6486.67Show/hide
Query:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE
        M+M WSGGDWMCGVCEH+NFKKREACQRCGYPKYGGPDPTTYE  KT ++LAGDWYC+CGAHNYASRS+C+RCN+YKS DIGALPGWKSGDWICNR+GCE
Subjt:  MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCE

Query:  THNYASRMECYKCQTPRAFG
        THNYASRMECYKC+TPR FG
Subjt:  THNYASRMECYKCQTPRAFG

SwissProt top hitse value%identityAlignment
O95218 Zinc finger Ran-binding domain-containing protein 22.2e-0634.02Show/hide
Query:  SGGDWMC--GVCEHMNFKKREACQRCG--------YPKYGGPDPTTYEQTKTQQLL-AGDWYC-NCGAHNYASRSTCFRCNSYKSVDIGALPGWKSG
        S GDW+C    C ++NF +R +C RCG          K GG +       K++ L  A DW C  C   N+A RS C  CN+ K   +    G+  G
Subjt:  SGGDWMC--GVCEHMNFKKREACQRCG--------YPKYGGPDPTTYEQTKTQQLL-AGDWYC-NCGAHNYASRSTCFRCNSYKSVDIGALPGWKSG

Q19QU3 Zinc finger Ran-binding domain-containing protein 22.2e-0634.02Show/hide
Query:  SGGDWMC--GVCEHMNFKKREACQRCG--------YPKYGGPDPTTYEQTKTQQLL-AGDWYC-NCGAHNYASRSTCFRCNSYKSVDIGALPGWKSG
        S GDW+C    C ++NF +R +C RCG          K GG +       K++ L  A DW C  C   N+A RS C  CN+ K   +    G+  G
Subjt:  SGGDWMC--GVCEHMNFKKREACQRCG--------YPKYGGPDPTTYEQTKTQQLL-AGDWYC-NCGAHNYASRSTCFRCNSYKSVDIGALPGWKSG

Q5R580 Zinc finger Ran-binding domain-containing protein 22.2e-0634.02Show/hide
Query:  SGGDWMC--GVCEHMNFKKREACQRCG--------YPKYGGPDPTTYEQTKTQQLL-AGDWYC-NCGAHNYASRSTCFRCNSYKSVDIGALPGWKSG
        S GDW+C    C ++NF +R +C RCG          K GG +       K++ L  A DW C  C   N+A RS C  CN+ K   +    G+  G
Subjt:  SGGDWMC--GVCEHMNFKKREACQRCG--------YPKYGGPDPTTYEQTKTQQLL-AGDWYC-NCGAHNYASRSTCFRCNSYKSVDIGALPGWKSG

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 24.4e-0735.05Show/hide
Query:  SGGDWMC--GVCEHMNFKKREACQRCG--------YPKYGGPDPTTYEQTKTQQLL-AGDWYC-NCGAHNYASRSTCFRCNSYKSVDIGALPGWKSG
        S GDW+C    C ++NF +R +C RCG          K GG +       K++ L  A DW C  CG  N+A RS C  CN+ K   +    G+  G
Subjt:  SGGDWMC--GVCEHMNFKKREACQRCG--------YPKYGGPDPTTYEQTKTQQLL-AGDWYC-NCGAHNYASRSTCFRCNSYKSVDIGALPGWKSG

Q9R020 Zinc finger Ran-binding domain-containing protein 22.2e-0634.02Show/hide
Query:  SGGDWMC--GVCEHMNFKKREACQRCG--------YPKYGGPDPTTYEQTKTQQLL-AGDWYC-NCGAHNYASRSTCFRCNSYKSVDIGALPGWKSG
        S GDW+C    C ++NF +R +C RCG          K GG +       K++ L  A DW C  C   N+A RS C  CN+ K   +    G+  G
Subjt:  SGGDWMC--GVCEHMNFKKREACQRCG--------YPKYGGPDPTTYEQTKTQQLL-AGDWYC-NCGAHNYASRSTCFRCNSYKSVDIGALPGWKSG

Arabidopsis top hitse value%identityAlignment
AT2G17975.1 zinc finger (Ran-binding) family protein5.0e-1423.56Show/hide
Query:  GDWMCGVCEHMNFKKREACQRCGYPK--------------------YGGPDPTTYEQTKT--------------QQLLAGDWYCNCGAHNYASRSTCFRC
        GDW+C  C + N+  RE C++CG  K                    Y    P +++Q  +              ++  +GDW C CG HNY+SR  C +C
Subjt:  GDWMCGVCEHMNFKKREACQRCGYPK--------------------YGGPDPTTYEQTKT--------------QQLLAGDWYCNCGAHNYASRSTCFRC

Query:  NSYKSVDIG---------------------------------ALPG-------------------------------WKSGDWICNRMGCETHNYASRME
        N    + +G                                 + PG                               W+ GDW+C    C+ HNYASR E
Subjt:  NSYKSVDIG---------------------------------ALPG-------------------------------WKSGDWICNRMGCETHNYASRME

Query:  CYKCQTPR
        C +C+T R
Subjt:  CYKCQTPR

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein9.4e-4552.55Show/hide
Query:  MTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYC---NCGAHNYASRSTCFRCN----------------SYKSVDIGA
        M+W+GGDW+CG C+H NFKKRE+CQ+CGYPK+GG D +TY   +T +++AGDWYC   NCG+HNYASR++C+RC                 +Y +     
Subjt:  MTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYC---NCGAHNYASRSTCFRCN----------------SYKSVDIGA

Query:  LPGWKSGDWICNRMGCETHNYASRMECYKCQTPRAFG
         PGWK+GDW+C R+GC  HNYASR EC+KC+T R +G
Subjt:  LPGWKSGDWICNRMGCETHNYASRMECYKCQTPRAFG

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein9.1e-3240.26Show/hide
Query:  GDWMCGVCEHMNFKKREACQRCG-------------YPKYGGPDPTTYEQTKTQQLLAGDWYC---NCGAHNYASRSTCFRCNSYK--------------
        GDW C  C H+NF++R++CQRCG             +  +GG   + +  T    +  GDWYC   NCG HN+ASRSTCF+C ++K              
Subjt:  GDWMCGVCEHMNFKKREACQRCG-------------YPKYGGPDPTTYEQTKTQQLLAGDWYC---NCGAHNYASRSTCFRCNSYK--------------

Query:  ----SVDI--------GALPGWKSGDWICNRMGCETHNYASRMECYKCQTPRAF
              DI        G    WKSGDWIC R+GC  HN+ASRMEC++C  PR F
Subjt:  ----SVDI--------GALPGWKSGDWICNRMGCETHNYASRMECYKCQTPRAF

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein1.8e-2735.44Show/hide
Query:  GDWMCGVCEHMNFKKREACQRCGYPKYGG------------PDPTTYEQTKTQQLLAGDWYCN---CGAHNYASRSTCFRCNSYK---------------
        GDW C +C H+NF++R++CQRC  P+ GG            P  +++       +  GDWYCN   CG HN+A+RS+CF+C + K               
Subjt:  GDWMCGVCEHMNFKKREACQRCGYPKYGG------------PDPTTYEQTKTQQLLAGDWYCN---CGAHNYASRSTCFRCNSYK---------------

Query:  SVDIGALPG------------------WKSGDWICNRMGCETHNYASRMECYKCQTPR
         +++G   G                  WKSGDWIC R GC  HN+ASR EC++C  P+
Subjt:  SVDIGALPG------------------WKSGDWICNRMGCETHNYASRMECYKCQTPR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATGACTTGGTCAGGAGGTGATTGGATGTGTGGTGTTTGTGAACACATGAATTTCAAAAAGAGAGAAGCTTGCCAAAGATGTGGGTACCCAAAATATGGTGGACC
AGACCCAACCACATATGAACAGACCAAGACACAACAACTCTTAGCAGGAGATTGGTATTGCAATTGTGGAGCCCACAACTATGCTAGCAGATCAACTTGTTTTAGGTGTA
ATTCATATAAAAGTGTTGATATTGGTGCCTTGCCTGGTTGGAAATCTGGGGATTGGATTTGCAATAGAATGGGATGTGAAACACATAACTATGCTAGTAGGATGGAATGC
TACAAGTGCCAAACTCCTAGGGCTTTTGGAAAATTGATTTTTGAAGAACCCTTAATGATGCTAATATTTGGCCAACTTACAAGCCGCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCATGACTTGGTCAGGAGGTGATTGGATGTGTGGTGTTTGTGAACACATGAATTTCAAAAAGAGAGAAGCTTGCCAAAGATGTGGGTACCCAAAATATGGTGGACC
AGACCCAACCACATATGAACAGACCAAGACACAACAACTCTTAGCAGGAGATTGGTATTGCAATTGTGGAGCCCACAACTATGCTAGCAGATCAACTTGTTTTAGGTGTA
ATTCATATAAAAGTGTTGATATTGGTGCCTTGCCTGGTTGGAAATCTGGGGATTGGATTTGCAATAGAATGGGATGTGAAACACATAACTATGCTAGTAGGATGGAATGC
TACAAGTGCCAAACTCCTAGGGCTTTTGGAAAATTGATTTTTGAAGAACCCTTAATGATGCTAATATTTGGCCAACTTACAAGCCGCTTCTAG
Protein sequenceShow/hide protein sequence
MSMTWSGGDWMCGVCEHMNFKKREACQRCGYPKYGGPDPTTYEQTKTQQLLAGDWYCNCGAHNYASRSTCFRCNSYKSVDIGALPGWKSGDWICNRMGCETHNYASRMEC
YKCQTPRAFGKLIFEEPLMMLIFGQLTSRF