; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0021626 (gene) of Chayote v1 genome

Gene IDSed0021626
OrganismSechium edule (Chayote v1)
Descriptionsplicing factor U2af small subunit B-like
Genome locationLG10:12186958..12188244
RNA-Seq ExpressionSed0021626
SyntenySed0021626
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0006096 - glycolytic process (biological process)
GO:0000015 - phosphopyruvate hydratase complex (cellular component)
GO:0005681 - spliceosomal complex (cellular component)
GO:0089701 - U2AF (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0004634 - phosphopyruvate hydratase activity (molecular function)
GO:0030628 - pre-mRNA 3'-splice site binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR000571 - Zinc finger, CCCH-type
IPR003954 - RNA recognition motif domain, eukaryote
IPR009145 - U2 auxiliary factor small subunit
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143302.1 splicing factor U2af small subunit B [Cucumis sativus]6.6e-12475.62Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTLLLSNMYQ PDMIT GV+PQGQ LDP K          DLF+EL+KYG L+SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRS---
        CDNLADHMVGNVYVQFREEEQA  AL NLNGRFYAGRPIIVDFSPVT FREATC+QYEENVCNRGGYCNFMHLKKISREL RRLFGRSR RRSRSRS   
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRS---

Query:  -------------------------QNGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGH
                                 ++G+ + RY+DRS RPRSRSPRHRGGRSRSP  GGRRNRSPVR+SSAERRAKIEQWNRD+EKEDN S HQD K  
Subjt:  -------------------------QNGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGH

Query:  GGKNNGFVQNEDEFDPSKQY
        GG N+  VQNEDEFDPSKQ+
Subjt:  GGKNNGFVQNEDEFDPSKQY

XP_022143785.1 splicing factor U2af small subunit B-like [Momordica charantia]2.3e-12477.29Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTLLLSNMYQ PDMIT GV+PQGQ LDP K          DLF+EL+KYG L+SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--
        CDNLADHMVGNVYVQFREEEQA  ALQNLNGRFYAGRPIIVDFSPVT FREATC+QYEENVCNRGGYCNFMHLKKISREL RRLFGRSR RRSRSRSQ  
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--

Query:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK
                               +GD + RY+DRS RPRSRSPRHRGGRSRSP  GGRRNRSPVR+SSAERRAKIEQWNRD+EK DN S HQD K  GG 
Subjt:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK

Query:  NNGFVQNEDEFDPSKQY
        +NG VQ+EDEFDPSKQY
Subjt:  NNGFVQNEDEFDPSKQY

XP_022925862.1 splicing factor U2af small subunit B-like [Cucurbita moschata]5.4e-12677.29Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTLLLSNMYQ PDMIT GV+PQGQ LDP K          DLF+EL+KYG L+SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--
        CDNLADHMVGNVYVQFREEEQA  ALQNLNGRFYAGRPIIVDFSPVT FREATC+QYEENVCNRGGYCNFMHLKKISREL RRLFGRSR RRSRS+SQ  
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--

Query:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK
                               +GD + RY+DRS RPRSRSPRHRGGRSRSP  GGRRNRSPVR+SSAERRAKIEQWNRD+E  DN SGHQD K  GG 
Subjt:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK

Query:  NNGFVQNEDEFDPSKQY
        +NG VQNEDEFDPSKQY
Subjt:  NNGFVQNEDEFDPSKQY

XP_022977786.1 splicing factor U2af small subunit B-like [Cucurbita maxima]1.2e-12576.97Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTLLLSNMYQ PDMIT GV+PQGQ LDP K          DLF+EL+KYG L+SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--
        CDNLADHMVGNVYVQFREEEQA  ALQNLNGRFYAGRPIIVDFSPVT FREATC+QYEENVCNRGGYCNFMHLKKISREL RRLFGRSR RRSRS+SQ  
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--

Query:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK
                               +GD + RY+DRS RPRSRSPRHRGGRSRSP  GGRRNRSPVR+SSAERRAKIEQWNRD+E  DN SGHQD K  GG 
Subjt:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK

Query:  NNGFVQNEDEFDPSKQY
        +NG VQN+DEFDPSKQY
Subjt:  NNGFVQNEDEFDPSKQY

XP_038882602.1 splicing factor U2af small subunit B-like [Benincasa hispida]6.6e-12476.1Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTLLLSNMYQ PDMIT GV+PQGQ LDP K          DLF+EL+KYG L+SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQN-
        CDNLADHMVGNVYVQFREEEQA  AL NLNGRFYAGRPIIVDFSPVT FREATC+QYEENVCNRGGYCNFMHLKKISREL RRLFGRSR RRSRSRSQ+ 
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQN-

Query:  -------------------------GDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGG
                                 GD + RY++RS RPRSRSPRHRGGRSRSP  GGRRNRSPVR+SSAERRAKIEQWNRD+EK DN S HQD K  GG
Subjt:  -------------------------GDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGG

Query:  KNNGFVQNEDEFDPSKQY
         N+   QNEDEFDPSKQY
Subjt:  KNNGFVQNEDEFDPSKQY

TrEMBL top hitse value%identityAlignment
A0A0A0KF96 Uncharacterized protein3.2e-12475.62Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTLLLSNMYQ PDMIT GV+PQGQ LDP K          DLF+EL+KYG L+SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRS---
        CDNLADHMVGNVYVQFREEEQA  AL NLNGRFYAGRPIIVDFSPVT FREATC+QYEENVCNRGGYCNFMHLKKISREL RRLFGRSR RRSRSRS   
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRS---

Query:  -------------------------QNGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGH
                                 ++G+ + RY+DRS RPRSRSPRHRGGRSRSP  GGRRNRSPVR+SSAERRAKIEQWNRD+EKEDN S HQD K  
Subjt:  -------------------------QNGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGH

Query:  GGKNNGFVQNEDEFDPSKQY
        GG N+  VQNEDEFDPSKQ+
Subjt:  GGKNNGFVQNEDEFDPSKQY

A0A1S3CH52 splicing factor U2af small subunit B-like2.7e-12375.79Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTLLLSNMYQ PDMIT GV+PQGQ LDP K          DLF+EL+KYG L+SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRS---
        CDNLADHMVGNVYVQFREEEQA  AL NLNGRFYAGRPIIVDFSPVT FREATC+QYEENVCNRGGYCNFMHLKKISREL RRLFGRSR RRSRSRS   
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRS---

Query:  -----------------------QNGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGG
                               ++G+ + RY DRS RPRSRSPRHRGGRSRSP  GGRRNRSPVR+SSAERRAKIEQWNRD+EK DN S HQD K  GG
Subjt:  -----------------------QNGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGG

Query:  KNNGFVQNEDEFDPSKQY
         N+  VQNEDEFDPSKQ+
Subjt:  KNNGFVQNEDEFDPSKQY

A0A6J1CPS3 splicing factor U2af small subunit B-like1.1e-12477.29Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTLLLSNMYQ PDMIT GV+PQGQ LDP K          DLF+EL+KYG L+SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--
        CDNLADHMVGNVYVQFREEEQA  ALQNLNGRFYAGRPIIVDFSPVT FREATC+QYEENVCNRGGYCNFMHLKKISREL RRLFGRSR RRSRSRSQ  
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--

Query:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK
                               +GD + RY+DRS RPRSRSPRHRGGRSRSP  GGRRNRSPVR+SSAERRAKIEQWNRD+EK DN S HQD K  GG 
Subjt:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK

Query:  NNGFVQNEDEFDPSKQY
        +NG VQ+EDEFDPSKQY
Subjt:  NNGFVQNEDEFDPSKQY

A0A6J1EGF6 splicing factor U2af small subunit B-like2.6e-12677.29Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTLLLSNMYQ PDMIT GV+PQGQ LDP K          DLF+EL+KYG L+SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--
        CDNLADHMVGNVYVQFREEEQA  ALQNLNGRFYAGRPIIVDFSPVT FREATC+QYEENVCNRGGYCNFMHLKKISREL RRLFGRSR RRSRS+SQ  
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--

Query:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK
                               +GD + RY+DRS RPRSRSPRHRGGRSRSP  GGRRNRSPVR+SSAERRAKIEQWNRD+E  DN SGHQD K  GG 
Subjt:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK

Query:  NNGFVQNEDEFDPSKQY
        +NG VQNEDEFDPSKQY
Subjt:  NNGFVQNEDEFDPSKQY

A0A6J1IJF4 splicing factor U2af small subunit B-like5.8e-12676.97Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPTLLLSNMYQ PDMIT GV+PQGQ LDP K          DLF+EL+KYG L+SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--
        CDNLADHMVGNVYVQFREEEQA  ALQNLNGRFYAGRPIIVDFSPVT FREATC+QYEENVCNRGGYCNFMHLKKISREL RRLFGRSR RRSRS+SQ  
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQ--

Query:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK
                               +GD + RY+DRS RPRSRSPRHRGGRSRSP  GGRRNRSPVR+SSAERRAKIEQWNRD+E  DN SGHQD K  GG 
Subjt:  -----------------------NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGK

Query:  NNGFVQNEDEFDPSKQY
        +NG VQN+DEFDPSKQY
Subjt:  NNGFVQNEDEFDPSKQY

SwissProt top hitse value%identityAlignment
Q01081 Splicing factor U2AF 35 kDa subunit2.9e-5851.79Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPD----------MITLGVEPQGQPLDPCKDLFDEL-TKYGHLDSLN
        M E+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP  S T+ L N+Y+ P                VE Q    +  +++F E+  KYG ++ +N
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPD----------MITLGVEPQGQPLDPCKDLFDEL-TKYGHLDSLN

Query:  ICDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHR-RSRSRSQ
        +CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVT FREA C+QYE   C RGG+CNFMHLK ISREL R L+GR R + RSRSRS 
Subjt:  ICDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHR-RSRSRSQ

Query:  NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAK
                  R  R RSR  R RGG      GGG R R   R    ER  +
Subjt:  NGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAK

Q6AUG0 Splicing factor U2af small subunit B2.1e-8556.44Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P +SPT++L+NMYQ PDMIT GV+ QGQP+DP K          D+++EL+K+G +++LN+
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLF-GRSRHRRSRSRSQN
        CDNLADHM+GNVYVQFREEEQA  A   L GRFY+GRPIIV++SPVT FREATC+Q+EEN CNRGGYCNFMH+K+I REL R+L+ GRSR    RSRS +
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLF-GRSRHRRSRSRSQN

Query:  GDNEFRYNDRSMRPRSR------------------------SPRHRGGRSRSPRGGG------------------RRNRSPVRDSSAERRAKIEQWNRDK
          +     DR    R R                           +RGG     RGGG                  RR RSPVR+SS ERRAKIEQWNR++
Subjt:  GDNEFRYNDRSMRPRSR------------------------SPRHRGGRSRSPRGGG------------------RRNRSPVRDSSAERRAKIEQWNRDK

Query:  EKE
        E++
Subjt:  EKE

Q9FMY5 Splicing factor U2af small subunit B6.4e-9063.7Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P ISPTLLLSNMYQ PDMIT GV+PQGQPLDP K          D+F+EL K+G ++SLN+
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRH-----RRSRS
        CDNLADHM+GNVYV F+EE+ A  ALQ L GRFY+GRPII DFSPVT FREATC+QYEEN CNRGGYCNFMH+K+ISREL R+LFGR R       RSRS
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRH-----RRSRS

Query:  RS-----------QNGDNEFRYNDR---SMRPRSRSPRH-RGGRSRSPRGGGRRNRSP--VRDSSAERRAKIEQWNRDKEK
        RS           +    + R  DR     R   RS RH R G  R   G  +R+RSP  VR+ S ERRA+IEQWNR++++
Subjt:  RS-----------QNGDNEFRYNDR---SMRPRSRSPRH-RGGRSRSPRGGGRRNRSP--VRDSSAERRAKIEQWNRDKEK

Q9S709 Splicing factor U2af small subunit A6.0e-8862.8Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P ISPTLLLSNMYQ PDMIT GV+ QGQPLDP K          DLF+EL K+G ++SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSR-------HRRS
        CDNLADHM+GNVYVQF+EE+QA  ALQ L GRFY+GRPII DFSPVT FREATC+QYEEN CNRGGYCNFMH+K +SREL R+LFGR R         RS
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSR-------HRRS

Query:  RSRSQNGDNEFRYNDR--------SMRPRSRS-PRHRGGRSRSPR--------GGGRRNRSPV--------RDSSAERRAKIEQWNRDKEKED
        RSRS +  N+ R NDR        S R R R   RH  G+  S R          GRR  SP         R+ S ERRA+IEQWNR++E+++
Subjt:  RSRSQNGDNEFRYNDR--------SMRPRSRS-PRHRGGRSRSPR--------GGGRRNRSPV--------RDSSAERRAKIEQWNRDKEKED

Q9ZQW8 Splicing factor U2af small subunit A7.9e-8860.49Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KP++SPTLLLSNMY  PDMIT G++ QG P+DP K          D+F+EL+KYG ++SL++
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFG-----RSRHRRSRS
        CDN ADHM+GNVYVQFREE+QA  ALQ L GR+Y+GRPIIV+FSPV+ FREATC+QYEEN CNRGGYCNFMH+K+I R+L +RLFG     R  H   RS
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFG-----RSRHRRSRS

Query:  RSQNGDNEFRYNDR--SMRPRSRSPRHRGGRSRSPRGGGRRN---------------------RSPVRDSSAERRAKIEQWNRDKE
        RS +  +  R  DR  S R R     +RGG     RGG RR+                     RSPVRD S ERRA+IEQWNR++E
Subjt:  RSQNGDNEFRYNDR--SMRPRSRSPRHRGGRSRSPRGGGRRN---------------------RSPVRDSSAERRAKIEQWNRDKE

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein1.6e-2731.45Show/hide
Query:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMI---TLGVEPQGQPLDPC-----KDLFDELTKYGHLDSLNICDNLADHMVG
        FGTE+D+ +CPF+ K GACR G RCSR+H  PN S TLL+ NMY  P +      G+E   +  + C     +D+  E  KYG L +  +C N + H+ G
Subjt:  FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMI---TLGVEPQGQPLDPC-----KDLFDELTKYGHLDSLNICDNLADHMVG

Query:  NVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEEN---VCNRGGYCNFMHL-----------------KKISRELIRRLFGRSRH
        NVYV +R  E A  A Q++NGR++AG+ +  +F  ++ ++ A C +Y ++    C+RG  CNF+H                   +     +  LFG S  
Subjt:  NVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEEN---VCNRGGYCNFMHL-----------------KKISRELIRRLFGRSRH

Query:  RRSRSRSQNGDNEF-------RYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWN-RDKEKEDNRSG
        +     S    N+         +   S R RSR   H    S +P    R+     +DS+ E + +    N  D +   +R G
Subjt:  RRSRSRSQNGDNEF-------RYNDRSMRPRSRSPRHRGGRSRSPRGGGRRNRSPVRDSSAERRAKIEQWN-RDKEKEDNRSG

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative4.3e-8962.8Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P ISPTLLLSNMYQ PDMIT GV+ QGQPLDP K          DLF+EL K+G ++SLNI
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSR-------HRRS
        CDNLADHM+GNVYVQF+EE+QA  ALQ L GRFY+GRPII DFSPVT FREATC+QYEEN CNRGGYCNFMH+K +SREL R+LFGR R         RS
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSR-------HRRS

Query:  RSRSQNGDNEFRYNDR--------SMRPRSRS-PRHRGGRSRSPR--------GGGRRNRSPV--------RDSSAERRAKIEQWNRDKEKED
        RSRS +  N+ R NDR        S R R R   RH  G+  S R          GRR  SP         R+ S ERRA+IEQWNR++E+++
Subjt:  RSRSQNGDNEFRYNDR--------SMRPRSRS-PRHRGGRSRSPR--------GGGRRNRSPV--------RDSSAERRAKIEQWNRDKEKED

AT1G27650.2 U2 snRNP auxiliary factor small subunit, putative1.3e-5856.79Show/hide
Query:  MYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNICDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFR
        MYQ PDMIT GV+ QGQPLDP K          DLF+EL K+G ++SLNICDNLADHM+GNVYVQF+EE+QA  ALQ L GRFY+GRPII DFSPVT FR
Subjt:  MYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNICDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFR

Query:  EATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSR-------HRRSRSRSQNGDNEFRYNDR--------SMRPRSRS-PRHRGGRSRSPR-----
        EATC+QYEEN CNRGGYCNFMH+K +SREL R+LFGR R         RSRSRS +  N+ R NDR        S R R R   RH  G+  S R     
Subjt:  EATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSR-------HRRSRSRSQNGDNEFRYNDR--------SMRPRSRS-PRHRGGRSRSPR-----

Query:  ---GGGRRNRSPV--------RDSSAERRAKIEQWNRDKEKED
             GRR  SP         R+ S ERRA+IEQWNR++E+++
Subjt:  ---GGGRRNRSPV--------RDSSAERRAKIEQWNRDKEKED

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein4.6e-9163.7Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P ISPTLLLSNMYQ PDMIT GV+PQGQPLDP K          D+F+EL K+G ++SLN+
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRH-----RRSRS
        CDNLADHM+GNVYV F+EE+ A  ALQ L GRFY+GRPII DFSPVT FREATC+QYEEN CNRGGYCNFMH+K+ISREL R+LFGR R       RSRS
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRH-----RRSRS

Query:  RS-----------QNGDNEFRYNDR---SMRPRSRSPRH-RGGRSRSPRGGGRRNRSP--VRDSSAERRAKIEQWNRDKEK
        RS           +    + R  DR     R   RS RH R G  R   G  +R+RSP  VR+ S ERRA+IEQWNR++++
Subjt:  RS-----------QNGDNEFRYNDR---SMRPRSRSPRH-RGGRSRSPRGGGRRNRSP--VRDSSAERRAKIEQWNRDKEK

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein4.6e-9163.7Show/hide
Query:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI
        M EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P ISPTLLLSNMYQ PDMIT GV+PQGQPLDP K          D+F+EL K+G ++SLN+
Subjt:  MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCK----------DLFDELTKYGHLDSLNI

Query:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRH-----RRSRS
        CDNLADHM+GNVYV F+EE+ A  ALQ L GRFY+GRPII DFSPVT FREATC+QYEEN CNRGGYCNFMH+K+ISREL R+LFGR R       RSRS
Subjt:  CDNLADHMVGNVYVQFREEEQATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRH-----RRSRS

Query:  RS-----------QNGDNEFRYNDR---SMRPRSRSPRH-RGGRSRSPRGGGRRNRSP--VRDSSAERRAKIEQWNRDKEK
        RS           +    + R  DR     R   RS RH R G  R   G  +R+RSP  VR+ S ERRA+IEQWNR++++
Subjt:  RS-----------QNGDNEFRYNDR---SMRPRSRSPRH-RGGRSRSPRGGGRRNRSP--VRDSSAERRAKIEQWNRDKEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAACACTTAGCGTCAATATTCGGAACGGAGAAGGATAGGGTGAACTGCCCGTTCTACTTCAAGATCGGAGCGTGCAGACATGGAGACCGGTGTTCTCGGCTTCA
CACGAAGCCCAACATCAGCCCCACCCTCCTCCTCTCCAACATGTACCAGTGCCCCGACATGATCACCCTCGGCGTCGAACCTCAGGGCCAACCCCTCGACCCTTGCAAGG
ACCTCTTCGACGAGCTCACCAAATACGGACATCTCGACAGCTTGAATATCTGTGATAATCTGGCCGACCATATGGTGGGCAATGTCTATGTTCAGTTCAGAGAAGAAGAA
CAAGCTACAACTGCTCTTCAGAATCTTAATGGGCGTTTTTATGCAGGGCGACCCATCATTGTTGACTTCTCTCCTGTGACGGGTTTTCGAGAAGCTACTTGTAAGCAATA
CGAGGAAAATGTATGTAATCGTGGTGGCTACTGCAATTTTATGCATTTGAAGAAGATTAGCAGAGAGTTGATAAGGCGTTTATTTGGGAGGAGCAGACACAGACGTAGCA
GAAGCCGTAGTCAAAACGGTGACAATGAATTTCGGTACAATGATAGAAGCATGAGACCTAGAAGTCGTAGTCCTAGGCATAGAGGGGGACGAAGTAGGAGCCCTAGAGGT
GGGGGCAGGAGGAATAGGAGCCCAGTTAGGGATAGTAGTGCTGAAAGAAGGGCTAAGATTGAACAGTGGAATAGGGACAAGGAAAAGGAAGACAATAGGAGTGGTCATCA
GGATGCCAAGGGTCATGGTGGAAAAAACAATGGCTTTGTACAAAATGAAGATGAATTCGATCCTTCTAAGCAGTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAACACTTAGCGTCAATATTCGGAACGGAGAAGGATAGGGTGAACTGCCCGTTCTACTTCAAGATCGGAGCGTGCAGACATGGAGACCGGTGTTCTCGGCTTCA
CACGAAGCCCAACATCAGCCCCACCCTCCTCCTCTCCAACATGTACCAGTGCCCCGACATGATCACCCTCGGCGTCGAACCTCAGGGCCAACCCCTCGACCCTTGCAAGG
ACCTCTTCGACGAGCTCACCAAATACGGACATCTCGACAGCTTGAATATCTGTGATAATCTGGCCGACCATATGGTGGGCAATGTCTATGTTCAGTTCAGAGAAGAAGAA
CAAGCTACAACTGCTCTTCAGAATCTTAATGGGCGTTTTTATGCAGGGCGACCCATCATTGTTGACTTCTCTCCTGTGACGGGTTTTCGAGAAGCTACTTGTAAGCAATA
CGAGGAAAATGTATGTAATCGTGGTGGCTACTGCAATTTTATGCATTTGAAGAAGATTAGCAGAGAGTTGATAAGGCGTTTATTTGGGAGGAGCAGACACAGACGTAGCA
GAAGCCGTAGTCAAAACGGTGACAATGAATTTCGGTACAATGATAGAAGCATGAGACCTAGAAGTCGTAGTCCTAGGCATAGAGGGGGACGAAGTAGGAGCCCTAGAGGT
GGGGGCAGGAGGAATAGGAGCCCAGTTAGGGATAGTAGTGCTGAAAGAAGGGCTAAGATTGAACAGTGGAATAGGGACAAGGAAAAGGAAGACAATAGGAGTGGTCATCA
GGATGCCAAGGGTCATGGTGGAAAAAACAATGGCTTTGTACAAAATGAAGATGAATTCGATCCTTCTAAGCAGTACTAG
Protein sequenceShow/hide protein sequence
MEEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPNISPTLLLSNMYQCPDMITLGVEPQGQPLDPCKDLFDELTKYGHLDSLNICDNLADHMVGNVYVQFREEE
QATTALQNLNGRFYAGRPIIVDFSPVTGFREATCKQYEENVCNRGGYCNFMHLKKISRELIRRLFGRSRHRRSRSRSQNGDNEFRYNDRSMRPRSRSPRHRGGRSRSPRG
GGRRNRSPVRDSSAERRAKIEQWNRDKEKEDNRSGHQDAKGHGGKNNGFVQNEDEFDPSKQY