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Sed0021664 (gene) of Chayote v1 genome

Gene IDSed0021664
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L44
Genome locationLG06:34733886..34734404
RNA-Seq ExpressionSed0021664
SyntenySed0021664
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052773.1 60S ribosomal protein L44 [Cucumis melo var. makuwa]9.8e-2240.36Show/hide
Query:  MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVDAA------VSVSPEFKNPPIASI----PPVFRTEIV----
        MA+SS + PPSK  F FLFTCF SS K+PA  P     R        +RFKKSSATVPVD A      +S SP+FK PP  S+     P    EIV    
Subjt:  MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVDAA------VSVSPEFKNPPIASI----PPVFRTEIV----

Query:  -------ETR---DPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETPAPPRKLEAAIVIVAVAV
               +TR   +  + + T ++  P ++ AASLHSV  PS+   RQKD K +V                    P P + T  P + L+  I++V VA+
Subjt:  -------ETR---DPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETPAPPRKLEAAIVIVAVAV

Query:  VVLWGRIGAILCITALLCLCRRL
        +VLWGR+ AILC TAL  L RR+
Subjt:  VVLWGRIGAILCITALLCLCRRL

KAG6606901.1 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia]4.4e-3049.77Show/hide
Query:  MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVDAAV-----------SVSPEFKNPP----IASIPPVFRTEI
        MAE+S+++ PSKR  +FL  CFGSS KV     P T   D  +   R+RFKKSSATVP+D AV           S SPEFK PP    I S  P  RT+I
Subjt:  MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVDAAV-----------SVSPEFKNPP----IASIPPVFRTEI

Query:  VETRDPI----RLDSTA-ERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PRK-LEAAIVIVAVAVVVLWGR
        VE   P     + +ST  +   PAKRTAA LHS+  PSRR NRQKDLK+TV  L AV+TP P                P K L+  IVIVAVA+VVLWG+
Subjt:  VETRDPI----RLDSTA-ERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PRK-LEAAIVIVAVAVVVLWGR

Query:  IGAILCITALLCLCRRL
        + AILC TAL   CRRL
Subjt:  IGAILCITALLCLCRRL

KGN58547.1 hypothetical protein Csa_002056 [Cucumis sativus]1.1e-1738.64Show/hide
Query:  MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVDAA------VSVSPEF-KNPPIASI---PPVFRTEIV----
        MA+SS+ IPPSK   +FLF+CF SS K+P         R        +RFKKSSATVPVD A      +S  PEF K+PP++ I    P    EIV    
Subjt:  MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVDAA------VSVSPEF-KNPPIASI---PPVFRTEIV----

Query:  ----ETR---DPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETPAPPRKLEAAIVIVAVAVVVL
            +TR      + + T ++  P ++TAA LHSV  PS++  RQK  K+ V                    P P + T  P +  +  I++V VA+V+L
Subjt:  ----ETR---DPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETPAPPRKLEAAIVIVAVAVVVL

Query:  WGRIGAILCITALLCLCRRL
        WGR+ AILC TAL  L RR+
Subjt:  WGRIGAILCITALLCLCRRL

XP_022934627.1 uncharacterized protein LOC111441760 [Cucurbita moschata]4.4e-1438.18Show/hide
Query:  MAESSDQIPPSKRRFNFLFTCFGSSRKV------PATVPPDR--PVRYRFKKSSATVPVDAAV------SVSPEFKNPPIASIPPVFRTEIV--------
        MAESSD     K R +FLF CF SS  V      P   P  R   +R+RFKKSSATVP+DAAV      S+SPEF  PP    PP+ + EI+        
Subjt:  MAESSDQIPPSKRRFNFLFTCFGSSRKV------PATVPPDR--PVRYRFKKSSATVPVDAAV------SVSPEFKNPPIASIPPVFRTEIV--------

Query:  ----------ETRDPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAV----------------ETPAPPRKLEAAIVIVAVAVVVL
                   T+   + +ST       K+T+ SLHS          +K LK+++  LP                   T +P +K +  IVIVAVA+VVL
Subjt:  ----------ETRDPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAV----------------ETPAPPRKLEAAIVIVAVAVVVL

Query:  WGRIGAILCITALLCLCRRL
        WGR+ AILC  AL  L R L
Subjt:  WGRIGAILCITALLCLCRRL

XP_022949237.1 uncharacterized protein LOC111452650 [Cucurbita moschata]3.4e-3049.77Show/hide
Query:  MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVDAAV-----------SVSPEFKNPP----IASIPPVFRTEI
        MAE+S+++ PSKR  +FL  CFGSS KV     P T   D  +   R+RFKKSSATVP+D AV           S SPEFK PP    I S  P  RT+I
Subjt:  MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVDAAV-----------SVSPEFKNPP----IASIPPVFRTEI

Query:  VETRDPI----RLDSTAERF-PPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PRK-LEAAIVIVAVAVVVLWGR
        VE   P     + +ST   F  PAKRTAA LHS+  PSRR NRQKD K+TV  L AV+TP P                P K L+  IVIVAVA+VVLWG+
Subjt:  VETRDPI----RLDSTAERF-PPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PRK-LEAAIVIVAVAVVVLWGR

Query:  IGAILCITALLCLCRRL
        + AILC TAL   CRRL
Subjt:  IGAILCITALLCLCRRL

TrEMBL top hitse value%identityAlignment
A0A0A0LCZ2 Uncharacterized protein5.4e-1838.64Show/hide
Query:  MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVDAA------VSVSPEF-KNPPIASI---PPVFRTEIV----
        MA+SS+ IPPSK   +FLF+CF SS K+P         R        +RFKKSSATVPVD A      +S  PEF K+PP++ I    P    EIV    
Subjt:  MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVDAA------VSVSPEF-KNPPIASI---PPVFRTEIV----

Query:  ----ETR---DPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETPAPPRKLEAAIVIVAVAVVVL
            +TR      + + T ++  P ++TAA LHSV  PS++  RQK  K+ V                    P P + T  P +  +  I++V VA+V+L
Subjt:  ----ETR---DPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETPAPPRKLEAAIVIVAVAVVVL

Query:  WGRIGAILCITALLCLCRRL
        WGR+ AILC TAL  L RR+
Subjt:  WGRIGAILCITALLCLCRRL

A0A5A7UA28 60S ribosomal protein L444.8e-2240.36Show/hide
Query:  MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVDAA------VSVSPEFKNPPIASI----PPVFRTEIV----
        MA+SS + PPSK  F FLFTCF SS K+PA  P     R        +RFKKSSATVPVD A      +S SP+FK PP  S+     P    EIV    
Subjt:  MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVR--------YRFKKSSATVPVDAA------VSVSPEFKNPPIASI----PPVFRTEIV----

Query:  -------ETR---DPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETPAPPRKLEAAIVIVAVAV
               +TR   +  + + T ++  P ++ AASLHSV  PS+   RQKD K +V                    P P + T  P + L+  I++V VA+
Subjt:  -------ETR---DPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVD-------------------PLPAVETPAPPRKLEAAIVIVAVAV

Query:  VVLWGRIGAILCITALLCLCRRL
        +VLWGR+ AILC TAL  L RR+
Subjt:  VVLWGRIGAILCITALLCLCRRL

A0A6J1F3C2 uncharacterized protein LOC1114417602.1e-1438.18Show/hide
Query:  MAESSDQIPPSKRRFNFLFTCFGSSRKV------PATVPPDR--PVRYRFKKSSATVPVDAAV------SVSPEFKNPPIASIPPVFRTEIV--------
        MAESSD     K R +FLF CF SS  V      P   P  R   +R+RFKKSSATVP+DAAV      S+SPEF  PP    PP+ + EI+        
Subjt:  MAESSDQIPPSKRRFNFLFTCFGSSRKV------PATVPPDR--PVRYRFKKSSATVPVDAAV------SVSPEFKNPPIASIPPVFRTEIV--------

Query:  ----------ETRDPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAV----------------ETPAPPRKLEAAIVIVAVAVVVL
                   T+   + +ST       K+T+ SLHS          +K LK+++  LP                   T +P +K +  IVIVAVA+VVL
Subjt:  ----------ETRDPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAV----------------ETPAPPRKLEAAIVIVAVAVVVL

Query:  WGRIGAILCITALLCLCRRL
        WGR+ AILC  AL  L R L
Subjt:  WGRIGAILCITALLCLCRRL

A0A6J1GBH7 uncharacterized protein LOC1114526501.6e-3049.77Show/hide
Query:  MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVDAAV-----------SVSPEFKNPP----IASIPPVFRTEI
        MAE+S+++ PSKR  +FL  CFGSS KV     P T   D  +   R+RFKKSSATVP+D AV           S SPEFK PP    I S  P  RT+I
Subjt:  MAESSDQIPPSKRRFNFLFTCFGSSRKV-----PATVPPDRPV---RYRFKKSSATVPVDAAV-----------SVSPEFKNPP----IASIPPVFRTEI

Query:  VETRDPI----RLDSTAERF-PPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PRK-LEAAIVIVAVAVVVLWGR
        VE   P     + +ST   F  PAKRTAA LHS+  PSRR NRQKD K+TV  L AV+TP P                P K L+  IVIVAVA+VVLWG+
Subjt:  VETRDPI----RLDSTAERF-PPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLPAVETPAP----------------PRK-LEAAIVIVAVAVVVLWGR

Query:  IGAILCITALLCLCRRL
        + AILC TAL   CRRL
Subjt:  IGAILCITALLCLCRRL

A0A6J1IZW6 uncharacterized protein LOC1114814552.8e-1438.25Show/hide
Query:  MAESSDQIPPSKRRFNFLFTCFGSS-----RKVPATVPPDR---PVRYRFKKSSATVPVDAAV------SVSPEFKNPPIASIPPVFRTEIVET------
        MAESSD     K R +FLF CF SS     +K      P+R    +R+RFKK SATVP+DAAV      S SPEF  PP  S  P+    IV++      
Subjt:  MAESSDQIPPSKRRFNFLFTCFGSS-----RKVPATVPPDR---PVRYRFKKSSATVPVDAAV------SVSPEFKNPPIASIPPVFRTEIVET------

Query:  -------RDPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLP------------------AVETPAPPRKLEAAIVIVAVAVVVLWGR
                +  + + T E+ PPAK+T+ SLHS          +K LK+++  LP                     T +P  K +   VIVAVA+VVLWGR
Subjt:  -------RDPIRLDSTAERFPPAKRTAASLHSVDSPSRRPNRQKDLKETVDPLP------------------AVETPAPPRKLEAAIVIVAVAVVVLWGR

Query:  IGAILCITALLCLCRRL
        + AILC  AL  L R L
Subjt:  IGAILCITALLCLCRRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAATCTTCTGACCAAATCCCTCCGTCCAAACGCCGATTCAATTTTCTCTTCACTTGCTTCGGATCTTCCCGCAAAGTTCCGGCGACCGTCCCACCGGACCGTCC
GGTTCGGTACCGGTTCAAGAAATCTTCTGCAACTGTACCGGTCGACGCCGCCGTCTCGGTTTCGCCGGAGTTCAAGAATCCGCCGATTGCGTCCATCCCTCCGGTATTCA
GAACAGAGATCGTCGAGACGAGAGACCCAATTCGATTAGATTCCACGGCGGAGAGATTTCCTCCGGCGAAAAGAACCGCAGCGTCGTTGCACTCCGTCGATTCTCCCTCC
CGGCGACCTAACCGCCAAAAAGATTTGAAAGAAACGGTCGATCCTCTCCCCGCCGTAGAAACCCCTGCGCCCCCGAGGAAGCTAGAGGCGGCGATTGTGATTGTTGCGGT
GGCGGTTGTGGTGCTGTGGGGGCGAATCGGCGCGATACTCTGCATCACGGCGCTGCTCTGTTTGTGCCGCCGATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAATCTTCTGACCAAATCCCTCCGTCCAAACGCCGATTCAATTTTCTCTTCACTTGCTTCGGATCTTCCCGCAAAGTTCCGGCGACCGTCCCACCGGACCGTCC
GGTTCGGTACCGGTTCAAGAAATCTTCTGCAACTGTACCGGTCGACGCCGCCGTCTCGGTTTCGCCGGAGTTCAAGAATCCGCCGATTGCGTCCATCCCTCCGGTATTCA
GAACAGAGATCGTCGAGACGAGAGACCCAATTCGATTAGATTCCACGGCGGAGAGATTTCCTCCGGCGAAAAGAACCGCAGCGTCGTTGCACTCCGTCGATTCTCCCTCC
CGGCGACCTAACCGCCAAAAAGATTTGAAAGAAACGGTCGATCCTCTCCCCGCCGTAGAAACCCCTGCGCCCCCGAGGAAGCTAGAGGCGGCGATTGTGATTGTTGCGGT
GGCGGTTGTGGTGCTGTGGGGGCGAATCGGCGCGATACTCTGCATCACGGCGCTGCTCTGTTTGTGCCGCCGATTGTGA
Protein sequenceShow/hide protein sequence
MAESSDQIPPSKRRFNFLFTCFGSSRKVPATVPPDRPVRYRFKKSSATVPVDAAVSVSPEFKNPPIASIPPVFRTEIVETRDPIRLDSTAERFPPAKRTAASLHSVDSPS
RRPNRQKDLKETVDPLPAVETPAPPRKLEAAIVIVAVAVVVLWGRIGAILCITALLCLCRRL