CuGenDBv2

Gene ID	Sed0021665
Organism	Sechium edule (Chayote v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	LG09:26573214..26587677
RNA-Seq Expression	Sed0021665
Synteny	Sed0021665
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0051585.1 uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa]

1.8e-26

64.76

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Query:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL
        +KKGE+PF E  + LKVG+IEVL+ESFTTPLTK+ K   Q  + D    +LP++RTKDGFDP AY+L+AKAGYDFTTHTEFK L I+ +Q KLSSTQKKL
Subjt:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL

Query:  LKKGY
        L++G+
Subjt:  LKKGY

KAA0054591.1 gypsy-like retrotransposase [Cucumis melo var. makuwa]

4.2e-28

66.67

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Query:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL
        +KKGE+PF E S+ LKVGDIEVLRESFTTPLTK+ K   Q ++ D+   +LP++RTKDGFDP AY+L+AKAGYDFTTH EFK L I  +Q KLSSTQKKL
Subjt:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL

Query:  LKKGY
        L++G+
Subjt:  LKKGY

KAA0062018.1 uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa]

6.7e-26

64.76

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Query:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL
        +KKGE+PF E S+ LKVGDIEVL+ESFTTPLTK+ K   Q  + D    +LP++RTKD FDP AY+L+AKAGYDFTTHTEFK L I  +Q K+SSTQKKL
Subjt:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL

Query:  LKKGY
        L++G+
Subjt:  LKKGY

KAA0065805.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.7e-26

64.76

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Query:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL
        +KKGE+PF E  + LKVGDIEVL+ESF TPLTK+ K   Q  + D    +LP++RTKDGFDP AY+L+AKAGYDFTTHTEFK L I  +Q KLSSTQKKL
Subjt:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL

Query:  LKKGY
        L++G+
Subjt:  LKKGY

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]

8.7e-26

58.1

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Query:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL
        +KKGE+PFTECSK L V + E+L+E+FT PLTK++K  +++ E+ +    LPE+RT +GFDP AY+L+AKAGYDFTT TE K + IFD++ +LS TQKKL
Subjt:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL

Query:  LKKGY
         K+GY
Subjt:  LKKGY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UD46 Uncharacterized protein

8.5e-27

64.76

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Query:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL
        +KKGE+PF E  + LKVG+IEVL+ESFTTPLTK+ K   Q  + D    +LP++RTKDGFDP AY+L+AKAGYDFTTHTEFK L I+ +Q KLSSTQKKL
Subjt:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL

Query:  LKKGY
        L++G+
Subjt:  LKKGY

A0A5A7UM27 Gypsy-like retrotransposase

2.0e-28

66.67

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Query:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL
        +KKGE+PF E S+ LKVGDIEVLRESFTTPLTK+ K   Q ++ D+   +LP++RTKDGFDP AY+L+AKAGYDFTTH EFK L I  +Q KLSSTQKKL
Subjt:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL

Query:  LKKGY
        L++G+
Subjt:  LKKGY

A0A5A7V356 Uncharacterized protein

3.2e-26

64.76

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Query:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL
        +KKGE+PF E S+ LKVGDIEVL+ESFTTPLTK+ K   Q  + D    +LP++RTKD FDP AY+L+AKAGYDFTTHTEFK L I  +Q K+SSTQKKL
Subjt:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL

Query:  LKKGY
        L++G+
Subjt:  LKKGY

A0A5D3BC47 Ty3-gypsy retrotransposon protein

3.2e-26

64.76

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Query:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL
        +KKGE+PF E  + LKVGDIEVL+ESF TPLTK+ K   Q  + D    +LP++RTKDGFDP AY+L+AKAGYDFTTHTEFK L I  +Q KLSSTQKKL
Subjt:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL

Query:  LKKGY
        L++G+
Subjt:  LKKGY

A0A5D3D7W3 Uncharacterized protein

4.2e-26

63.81

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Query:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL
        +KKGE+PF E  + LKVGDI+VL+ESFTTPLTK+ K   Q  + D    +LP++RTKDGFDP AY+L+AKAGY+FTTHTEFK L I  +Q KLSSTQKKL
Subjt:  KKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKL

Query:  LKKGY
        L++G+
Subjt:  LKKGY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCCCTATATCCCACTAAAAAAAAGGGTGAAGCGCCTTTCACCGAATGTTCTAAAAAATTGAAAGTAGGTGATATTGAAGTATTGAGGGAAAGTTTCACCACTCCTTT
GACAAAGATGAAAAAGCAATGGAGTCAGAGGAGCGAAGAAGATGAGAAGAATGTTGCTTTGCCTGAGAAGCGGACAAAGGATGGATTTGACCCCAATGCGTACAGACTGC
TAGCTAAAGCAGGGTATGATTTCACGACACATACCGAGTTCAAACGCTTAAGTATATTTGATGACCAAGCCAAGCTTTCTTCGACGCAAAAGAAGCTGTTGAAGAAAGGT
TACTTTTACCAAGACTGGGTTAAGAAAGTAGAAAGCGACACAAATCCGTTCTTGGAGGCCGAGTCTCATTTCGCGGATGCAAAATTCTATGCAAAAACGAGGGTGTGGAG
AAAGCAAGTGCCACATGAGGTCCCTACGATAAAAGAGAGTGAAAAAGCTAAGCTAAAAACAGAGGCCGACATAAAAAGAAATAGGTAG

mRNA sequence

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Protein sequence

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MSLYPTKKKGEAPFTECSKKLKVGDIEVLRESFTTPLTKMKKQWSQRSEEDEKNVALPEKRTKDGFDPNAYRLLAKAGYDFTTHTEFKRLSIFDDQAKLSSTQKKLLKKG
YFYQDWVKKVESDTNPFLEAESHFADAKFYAKTRVWRKQVPHEVPTIKESEKAKLKTEADIKRNR

Sed0021665 (gene) of Chayote v1 genome