; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0021692 (gene) of Chayote v1 genome

Gene IDSed0021692
OrganismSechium edule (Chayote v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationLG13:25863785..25864795
RNA-Seq ExpressionSed0021692
SyntenySed0021692
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024539.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-3271.72Show/hide
Query:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN
        ++ ++ K  DV+ M+AW SAKRAF FS DL+TYEALIHGSV+SKCFDFAVRCF+EMMLSGIVPN IIL++MLEG CK K LDE+K+ L VV DKGWEIN
Subjt:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN

XP_008466249.1 PREDICTED: pentatricopeptide repeat-containing protein At3g09060-like [Cucumis melo]1.3e-3479.57Show/hide
Query:  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN
        KLRDV+ MQAW SAK+AF FSPDL+TYEALIHGSV+SKCFDFAV+CFEEMMLS IVPN IILE+MLEG+CK K  DEVK+ LNVV D GWEIN
Subjt:  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN

XP_022148798.1 pentatricopeptide repeat-containing protein At3g48810-like [Momordica charantia]2.3e-3472.73Show/hide
Query:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN
        ++ ++ +L DVD MQAW SAKRAFGFSPDLQTYE+LI+GSV SKCFDFAVRCFEEMM+SGIVPN IILE+M+EG+CK K  +EVK+ LN+VFD GWEI+
Subjt:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN

XP_022975914.1 pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita maxima]7.3e-3371.43Show/hide
Query:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEI--
        ++ ++ KLRDV+ M+AW SAKRAF FS DL+TYEALIHGSV SKCFDFAVRCF+EMMLSGIVPN IIL++MLEG CK K LDE+K+ L VV DKGWEI  
Subjt:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEI--

Query:  NLSEK
        N+ EK
Subjt:  NLSEK

XP_038897030.1 pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Benincasa hispida]2.2e-3778.79Show/hide
Query:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN
        +++ + KL DV+ MQAW SAK+AFGFSPDL+TYEALIHGSV+SKCFDFAV+CFEEMMLSGIVPNTIILE+MLEG+CK K LDEVK+ LNVV DKGWEIN
Subjt:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN

TrEMBL top hitse value%identityAlignment
A0A0A0LJI4 Uncharacterized protein1.3e-3269.52Show/hide
Query:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEI--
        ++ ++ KL DV+ MQAW SAK+AF FSPDL+TYEALIHGSV+S CFDF V+CFEEM+LS IVPNTIILE+MLEG+CK K  DEVK+ LNVV D GWEI  
Subjt:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEI--

Query:  NLSEK
        N+ EK
Subjt:  NLSEK

A0A1S3CS56 pentatricopeptide repeat-containing protein At3g09060-like6.4e-3579.57Show/hide
Query:  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN
        KLRDV+ MQAW SAK+AF FSPDL+TYEALIHGSV+SKCFDFAV+CFEEMMLS IVPN IILE+MLEG+CK K  DEVK+ LNVV D GWEIN
Subjt:  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN

A0A5D3E5Z9 Pentatricopeptide repeat-containing protein6.4e-3579.57Show/hide
Query:  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN
        KLRDV+ MQAW SAK+AF FSPDL+TYEALIHGSV+SKCFDFAV+CFEEMMLS IVPN IILE+MLEG+CK K  DEVK+ LNVV D GWEIN
Subjt:  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN

A0A6J1D545 pentatricopeptide repeat-containing protein At3g48810-like1.1e-3472.73Show/hide
Query:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN
        ++ ++ +L DVD MQAW SAKRAFGFSPDLQTYE+LI+GSV SKCFDFAVRCFEEMM+SGIVPN IILE+M+EG+CK K  +EVK+ LN+VFD GWEI+
Subjt:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN

A0A6J1II25 pentatricopeptide repeat-containing protein At2g37230-like isoform X13.5e-3371.43Show/hide
Query:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEI--
        ++ ++ KLRDV+ M+AW SAKRAF FS DL+TYEALIHGSV SKCFDFAVRCF+EMMLSGIVPN IIL++MLEG CK K LDE+K+ L VV DKGWEI  
Subjt:  WLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEI--

Query:  NLSEK
        N+ EK
Subjt:  NLSEK

SwissProt top hitse value%identityAlignment
Q6NQ83 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial2.1e-0635.21Show/hide
Query:  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG
        G  PD+ TY  LI+   ++K  D  +R F E+   G++PNTI    ++ G C+  KL+  KEL   +  +G
Subjt:  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG

Q8VZE4 Pentatricopeptide repeat-containing protein At4g015706.5e-0834.04Show/hide
Query:  DFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG-----WEINL
        D +  WD  K   G  PD  TY  LI G  +S   D A+R + EM  +G VP+TI+   +L+G  K +K+ E  +L   +  +G     W  N+
Subjt:  DFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG-----WEINL

Q940A6 Pentatricopeptide repeat-containing protein At4g19440, chloroplastic7.1e-0731.71Show/hide
Query:  MQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG
        +Q WD  KR  G  PD+ TY  +I G  +++  +     F+EMM   + PNT++  H++   C+  +L    EL   +  KG
Subjt:  MQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG

Q9MAG8 Putative pentatricopeptide repeat-containing protein At1g533302.7e-0634.48Show/hide
Query:  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFD
        K  +++ M+   S+   FG  PD  TY  LIHG  +S CFD A++ F+EM+   + P  +    ++ G+CK  +   VKE L +  D
Subjt:  KLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFD

Q9ZVX5 Pentatricopeptide repeat-containing protein At2g168805.5e-0738.67Show/hide
Query:  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN
        GFSPD+ TY  LI   ++      A+    EM   GI  NTI L  +L+ +CK +KLDE   LLN    +G+ ++
Subjt:  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN

Arabidopsis top hitse value%identityAlignment
AT2G16880.1 Pentatricopeptide repeat (PPR) superfamily protein3.9e-0838.67Show/hide
Query:  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN
        GFSPD+ TY  LI   ++      A+    EM   GI  NTI L  +L+ +CK +KLDE   LLN    +G+ ++
Subjt:  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEIN

AT3G22470.1 Pentatricopeptide repeat (PPR) superfamily protein1.5e-0735.21Show/hide
Query:  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG
        G  PD+ TY  LI+   ++K  D  +R F E+   G++PNTI    ++ G C+  KL+  KEL   +  +G
Subjt:  GFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG

AT4G01570.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.6e-0934.04Show/hide
Query:  DFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG-----WEINL
        D +  WD  K   G  PD  TY  LI G  +S   D A+R + EM  +G VP+TI+   +L+G  K +K+ E  +L   +  +G     W  N+
Subjt:  DFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG-----WEINL

AT4G19440.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.1e-0831.71Show/hide
Query:  MQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG
        +Q WD  KR  G  PD+ TY  +I G  +++  +     F+EMM   + PNT++  H++   C+  +L    EL   +  KG
Subjt:  MQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG

AT4G19440.2 Tetratricopeptide repeat (TPR)-like superfamily protein5.1e-0831.71Show/hide
Query:  MQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG
        +Q WD  KR  G  PD+ TY  +I G  +++  +     F+EMM   + PNT++  H++   C+  +L    EL   +  KG
Subjt:  MQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEEMMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTCTCTGTAGCTTCCAACTTTCCTGGAAATCCCTTGTTAGGCCTCTCACTCCTCTTAATAATAGACCACCATATTAGAGAGCAGGTTGAAGATCTTATTATAAG
ATATTTGGCTTTTATTTTTAAATATTTGAGTGTTCAGGTACGTTTACGCCCACCATGGCTATACTCATGGTACAAATTGCGCGATGTTGATTTCATGCAAGCATGGGATT
CAGCGAAAAGAGCTTTTGGATTCTCTCCGGACCTTCAAACTTATGAAGCTCTTATACATGGCAGTGTGGAATCAAAATGTTTTGATTTTGCTGTTAGATGTTTTGAGGAA
ATGATGCTGTCTGGCATTGTGCCTAACACAATCATATTGGAGCATATGCTTGAAGGAGTCTGCAAGGGGAAAAAATTGGATGAAGTAAAAGAGTTATTGAATGTTGTGTT
TGACAAAGGATGGGAGATCAATTTATCTGAGAAGGTGGAAGCAAAGAGTCAACCGAAAAATTGGAGTTTCGCTGCACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGATTTTCTCTGTAGCTTCCAACTTTCCTGGAAATCCCTTGTTAGGCCTCTCACTCCTCTTAATAATAGACCACCATATTAGAGAGCAGGTTGAAGATCTTATTATAAG
ATATTTGGCTTTTATTTTTAAATATTTGAGTGTTCAGGTACGTTTACGCCCACCATGGCTATACTCATGGTACAAATTGCGCGATGTTGATTTCATGCAAGCATGGGATT
CAGCGAAAAGAGCTTTTGGATTCTCTCCGGACCTTCAAACTTATGAAGCTCTTATACATGGCAGTGTGGAATCAAAATGTTTTGATTTTGCTGTTAGATGTTTTGAGGAA
ATGATGCTGTCTGGCATTGTGCCTAACACAATCATATTGGAGCATATGCTTGAAGGAGTCTGCAAGGGGAAAAAATTGGATGAAGTAAAAGAGTTATTGAATGTTGTGTT
TGACAAAGGATGGGAGATCAATTTATCTGAGAAGGTGGAAGCAAAGAGTCAACCGAAAAATTGGAGTTTCGCTGCACCATAG
Protein sequenceShow/hide protein sequence
MIFSVASNFPGNPLLGLSLLLIIDHHIREQVEDLIIRYLAFIFKYLSVQVRLRPPWLYSWYKLRDVDFMQAWDSAKRAFGFSPDLQTYEALIHGSVESKCFDFAVRCFEE
MMLSGIVPNTIILEHMLEGVCKGKKLDEVKELLNVVFDKGWEINLSEKVEAKSQPKNWSFAAP