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Sed0021705 (gene) of Chayote v1 genome

Gene IDSed0021705
OrganismSechium edule (Chayote v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
Genome locationLG05:35656643..35658443
RNA-Seq ExpressionSed0021705
SyntenySed0021705
Gene Ontology termsNA
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022286.1 hypothetical protein SDJN02_16017, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-2782.22Show/hide
Query:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGF
        MASVCRS+LTA GSR +AGRTRTL  KTLNPMP    SSSS+ L+ V RIVSSLATVESL+PLHSAVASARLKSKIAVDSHCWSWLSEGF
Subjt:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGF

XP_022136047.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia]1.1e-3085.11Show/hide
Query:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL
        MA+VCRSLLTAAGSRS+AGRTRTL  KTLNPMP+  SSSSSR +  V RIVSSLATVESL+PLHSAVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL

XP_022933658.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucurbita moschata]1.0e-2881.91Show/hide
Query:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL
        MASVCRS+LTA G+R V GRTRTL  KTLNPMP    SSSSR L+ V RIVSSLATVESL+PLHSAVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL

XP_023531748.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]2.0e-2982.98Show/hide
Query:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL
        MASVCRS+LTA GSRS+AGRTRTL  KTLNPMP    SSSS+ L+ V RIVSSLATVESL+PLHSAVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL

XP_038887804.1 protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [Benincasa hispida]1.5e-2780.85Show/hide
Query:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL
        MASVCRSLLTAA SRS+AGRTRTL  KTLNP+ +   SSSSR  S V RIVSSLATVESL+PLHSAVASARLKSKIAVDSHCW WLSEGF T L
Subjt:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL

TrEMBL top hitse value%identityAlignment
A0A0A0K7P3 Uncharacterized protein3.9e-2676.6Show/hide
Query:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL
        MASV RSLLTAA SRS+ GRT++L  KTLNP+P+  SSSSSR      RIVSSLA VESL+PLH+AVASARLKSKIAVDSHCWSWLSEGFAT+L
Subjt:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL

A0A6J1C4G8 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial5.2e-3185.11Show/hide
Query:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL
        MA+VCRSLLTAAGSRS+AGRTRTL  KTLNPMP+  SSSSSR +  V RIVSSLATVESL+PLHSAVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL

A0A6J1F5F6 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like4.9e-2981.91Show/hide
Query:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL
        MASVCRS+LTA G+R V GRTRTL  KTLNPMP    SSSSR L+ V RIVSSLATVESL+PLHSAVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL

A0A6J1GKU0 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like7.3e-2574.23Show/hide
Query:  MASVCRSLLTAA---GSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL
        MAS+CRSLL AA   GSRS+AGRTRTL   TL P+P+   SSSSR    V RI SSLA+V+SL+PLHSAVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASVCRSLLTAA---GSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL

A0A6J1I675 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial1.6e-2475Show/hide
Query:  MASVCRSLLTAA--GSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL
        MASVCRSLL AA  GSRS+AGRTRTL   TL P+P+   SSSSR    V RI  SLA+V+SL+PLHSAVASARLKSKIAVDSHCWSWLSEGFAT L
Subjt:  MASVCRSLLTAA--GSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein5.7e-0638.46Show/hide
Query:  NPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL
        +P+  SS SS++  ++  FR+   L+   S++PLHSA+ASARL S ++V+S  W  + +G +  L
Subjt:  NPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL

AT1G55205.2 unknown protein1.7e-0540Show/hide
Query:  NPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEG
        +P+  SS SS++  ++  FR+   L+   S++PLHSA+ASARL S ++V+S  W  + +G
Subjt:  NPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEG

AT2G20585.3 nuclear fusion defective 62.2e-0538.64Show/hide
Query:  SVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPL-SSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEG
        S  RS+L AA SRS A  T     +  +  PL  +++  S  LS +   V     VESL+P HSA ASA + SK+++    + WLS+G
Subjt:  SVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPL-SSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEG

AT4G39300.1 unknown protein3.8e-1854.64Show/hide
Query:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSS---SSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL
        MAS CRS L  AGSR++  R+RT+  K+LN  P ++SS   S S+++    R++S+L +VE++IPLHSAVASARL+S IA DS CWS LS+G AT L
Subjt:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSS---SSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL

AT4G39300.2 unknown protein4.7e-1653.85Show/hide
Query:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSS---SSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSE
        MAS CRS L  AGSR++  R+RT+  K+LN  P ++SS   S S+++    R++S+L +VE++IPLHSAVASARL+S IA DS CWS LS+
Subjt:  MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSS---SSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTTTGCCGATCGCTTCTTACGGCGGCGGGATCGAGGTCCGTGGCCGGCCGGACCAGAACTCTCCCTCTCAAAACCCTAAATCCAATGCCTCTTTCTTCTTC
TTCTTCTTCTTCAAGAAATCTCTCTTACGTTTTCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCGCTGATTCCACTCCACAGCGCCGTCGCCTCTGCTCGGTTGAAGT
CCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGATTTGCGACGACTTTGTGA
mRNA sequenceShow/hide mRNA sequence
AAAAGGCAATAAGAAAAGTTGACATTAGAAAGCAATTCCTCAAGGCAGTAGGTTGAGGGTTCCGCCTCCGCCGAACACCAGAAATGGCTTCCGTTTGCCGATCGCTTCTT
ACGGCGGCGGGATCGAGGTCCGTGGCCGGCCGGACCAGAACTCTCCCTCTCAAAACCCTAAATCCAATGCCTCTTTCTTCTTCTTCTTCTTCTTCAAGAAATCTCTCTTA
CGTTTTCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCGCTGATTCCACTCCACAGCGCCGTCGCCTCTGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCT
GGAGCTGGCTTTCTGAAGGATTTGCGACGACTTTGTGACATAAACACTCGTAAAGGAAGACGAATTTGAATCGACTATACAGCTCAATGACTGGTAGCTGAGAGGACACT
TTGTAAGACTTGTGAGGTTTTTCTTCTTTCCCTACTAATCTTTGTTAGATACCTTTAGCACAAGGAAGAATCATTTAGACGACTGTTTTTTAGTTTTGATCATTGTAAAA
TGCAATGCAGCCACCATTTCTGGATATCTGAGAGTTGTTGTTTGATCCTCTGACCACAGACCTTGAAAGATTGAATTGTTATTTGGCATTTCTCTGTTGCTATTAACTTT
GTTCAATAACATGCATGAGC
Protein sequenceShow/hide protein sequence
MASVCRSLLTAAGSRSVAGRTRTLPLKTLNPMPLSSSSSSSRNLSYVFRIVSSLATVESLIPLHSAVASARLKSKIAVDSHCWSWLSEGFATTL