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Sed0021774 (gene) of Chayote v1 genome

Gene IDSed0021774
OrganismSechium edule (Chayote v1)
DescriptionDuplicated homeodomain-like superfamily protein
Genome locationContig00335_ERROPOS5334465:40154..41951
RNA-Seq ExpressionSed0021774
SyntenySed0021774
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044592.1 myb-like protein J [Cucumis melo var. makuwa]4.2e-1647.33Show/hide
Query:  TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK
        TGLLSDIV         + T SS    LSS       +     + +++ ++ WS  EH+L L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H 
Subjt:  TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK

Query:  GK----KSKRASIHDTDNVDRRLLSQVRARL
         K    K KR+SIHD   V+   L++V A L
Subjt:  GK----KSKRASIHDTDNVDRRLLSQVRARL

TYK16992.1 myb-like protein J [Cucumis melo var. makuwa]1.0e-1454.55Show/hide
Query:  VNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKGK----KSKRASIHDTDNVDRRLLSQVRARL
        + ++  ++ WS  EH+L L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H  K    K KR+SIHD   V+   L++V A L
Subjt:  VNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKGK----KSKRASIHDTDNVDRRLLSQVRARL

XP_008454484.1 PREDICTED: myb-like protein J [Cucumis melo]4.2e-1647.33Show/hide
Query:  TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK
        TGLLSDIV         + T SS    LSS       +     + +++ ++ WS  EH+L L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H 
Subjt:  TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK

Query:  GK----KSKRASIHDTDNVDRRLLSQVRARL
         K    K KR+SIHD   V+   L++V A L
Subjt:  GK----KSKRASIHDTDNVDRRLLSQVRARL

XP_011654326.2 myb-like protein J [Cucumis sativus]5.1e-1443.31Show/hide
Query:  TGLLSDIVNFCSNNEIHLSTASSPKILLSSN--GAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF-DHK
        TGLLSDI        +   + S+  +L SS+       +Q  +   +  + WS  EHKL L GMQ+ G+G WKKIAN VVITKT+ QVASHAQKYF    
Subjt:  TGLLSDIVNFCSNNEIHLSTASSPKILLSSN--GAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF-DHK

Query:  GKKSKRASIHDTDNVDRRLLSQVRARL
          K KR SIHD    +    +   AR+
Subjt:  GKKSKRASIHDTDNVDRRLLSQVRARL

XP_023522314.1 transcription factor SRM1-like [Cucurbita pepo subsp. pepo]1.3e-2048.48Show/hide
Query:  TAINRTGLLSDIVNFCSNNEIHLSTASSPKILLSSNGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFD
        T +  TG LSD++NFCSNN  H        ++ ++NG V+       SS  +  W+  EHKL LVGM I+G G WK IAN VV+TKT+ QVASHAQK+  
Subjt:  TAINRTGLLSDIVNFCSNNEIHLSTASSPKILLSSNGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFD

Query:  HK---GKKSKRASIHDTDNVDRRLLSQVRARL
         +    ++ KR SIHD D VD  LLS+V ARL
Subjt:  HK---GKKSKRASIHDTDNVDRRLLSQVRARL

TrEMBL top hitse value%identityAlignment
A0A0A0KTY5 HTH myb-type domain-containing protein4.2e-1441.73Show/hide
Query:  TGLLSDIVNFCSNNEIHLSTASSPKILLSSN--GAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF-DHK
        TGLLSDI        +   + S+  +L SS+       +Q  +   +  + WS  EHKL L GMQ+ G+G WKKIAN VV+TKT+ QVASHAQKYF    
Subjt:  TGLLSDIVNFCSNNEIHLSTASSPKILLSSN--GAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF-DHK

Query:  GKKSKRASIHDTDNVDRRLLSQVRARL
         +K KR SIHD    +    +   +R+
Subjt:  GKKSKRASIHDTDNVDRRLLSQVRARL

A0A0A0KYZ4 HTH myb-type domain-containing protein2.5e-1443.31Show/hide
Query:  TGLLSDIVNFCSNNEIHLSTASSPKILLSSN--GAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF-DHK
        TGLLSDI        +   + S+  +L SS+       +Q  +   +  + WS  EHKL L GMQ+ G+G WKKIAN VVITKT+ QVASHAQKYF    
Subjt:  TGLLSDIVNFCSNNEIHLSTASSPKILLSSN--GAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF-DHK

Query:  GKKSKRASIHDTDNVDRRLLSQVRARL
          K KR SIHD    +    +   AR+
Subjt:  GKKSKRASIHDTDNVDRRLLSQVRARL

A0A1S3BZH7 myb-like protein J2.0e-1647.33Show/hide
Query:  TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK
        TGLLSDIV         + T SS    LSS       +     + +++ ++ WS  EH+L L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H 
Subjt:  TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK

Query:  GK----KSKRASIHDTDNVDRRLLSQVRARL
         K    K KR+SIHD   V+   L++V A L
Subjt:  GK----KSKRASIHDTDNVDRRLLSQVRARL

A0A5A7TMR3 Myb-like protein J2.0e-1647.33Show/hide
Query:  TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK
        TGLLSDIV         + T SS    LSS       +     + +++ ++ WS  EH+L L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H 
Subjt:  TGLLSDIVNFCSNNEIHLSTASSPKILLSS---NGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK

Query:  GK----KSKRASIHDTDNVDRRLLSQVRARL
         K    K KR+SIHD   V+   L++V A L
Subjt:  GK----KSKRASIHDTDNVDRRLLSQVRARL

A0A5D3CZL0 Myb-like protein J5.0e-1554.55Show/hide
Query:  VNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKGK----KSKRASIHDTDNVDRRLLSQVRARL
        + ++  ++ WS  EH+L L GMQ+ GK EWKKIA++VVITKT+KQVASHAQKYF H  K    K KR+SIHD   V+   L++V A L
Subjt:  VNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKGK----KSKRASIHDTDNVDRRLLSQVRARL

SwissProt top hitse value%identityAlignment
B8A9B2 Transcription factor MYBS12.1e-1046.97Show/hide
Query:  WSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASIHDTDNV
        W+  EH+L L+G+  +GKG+W+ I+ N VI++T  QVASHAQKYF   +   +  +R+SIHD  +V
Subjt:  WSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASIHDTDNV

Q8LH59 Transcription factor MYBS12.1e-1046.97Show/hide
Query:  WSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASIHDTDNV
        W+  EH+L L+G+  +GKG+W+ I+ N VI++T  QVASHAQKYF   +   +  +R+SIHD  +V
Subjt:  WSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASIHDTDNV

Q8S9H7 Transcription factor DIVARICATA1.6e-1347.13Show/hide
Query:  GAVAATQGGVNSSDRKS--TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK---GKKSKRASIHDTDNVD
        G   ++ G  +  +RK    W+  EHKL L+G++ YGKG+W+ I+ N VIT+T  QVASHAQKYF  +   GK  +RASIHD   V+
Subjt:  GAVAATQGGVNSSDRKS--TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK---GKKSKRASIHDTDNVD

Q9FNN6 Transcription factor SRM13.8e-1244.05Show/hide
Query:  ATQGGVNSSDRKS----TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASIHDTDNV
        + Q G + SD++      W+  EH+L L+G+  YGKG+W+ I+ N V+T+T  QVASHAQKYF   +   K  +R+SIHD  +V
Subjt:  ATQGGVNSSDRKS----TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASIHDTDNV

Q9LVS0 Transcription factor KUA11.8e-0942.67Show/hide
Query:  GGVNSSDRK--STWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASIHD
        G  +S +RK  + W+  EH++ L+G+Q  GKG+W+ I+ N V T+T  QVASHAQKYF    +  ++ +R+S+ D
Subjt:  GGVNSSDRK--STWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASIHD

Arabidopsis top hitse value%identityAlignment
AT1G49010.1 Duplicated homeodomain-like superfamily protein3.0e-1235.09Show/hide
Query:  SNNEIHLSTASSPKILLSSNGAVAATQGGVNSSDRKS-------TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKS
        +N + H S +S  K    ++G ++++ GG +   R          W+  EH+L L+G+  +GKG+W+ I+ N VI++T  QVASHAQKYF   +   +  
Subjt:  SNNEIHLSTASSPKILLSSNGAVAATQGGVNSSDRKS-------TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKS

Query:  KRASIHDTDNVDRR
        +R+SIHD   V+ +
Subjt:  KRASIHDTDNVDRR

AT2G38090.1 Duplicated homeodomain-like superfamily protein1.3e-1243.16Show/hide
Query:  NGAVAATQGGVNSS-------DRKS--TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK---GKKSKRASIHDTDNVD
        NG   +  GG   S       +RK    W+  EH+  L+G++ YGKG+W+ IA N V T+T  QVASHAQKYF  +   GK  +R+SIHD   V+
Subjt:  NGAVAATQGGVNSS-------DRKS--TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK---GKKSKRASIHDTDNVD

AT5G04760.1 Duplicated homeodomain-like superfamily protein7.6e-1650Show/hide
Query:  GVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKG---KKSKRASIHDTDNVDRRL
        G +   R + W+ +EHKL L+G++ YGKG+W+ I+ NVV+T+T  QVASHAQKYF  +    K+ KR+SIHD   VD  L
Subjt:  GVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHKG---KKSKRASIHDTDNVDRRL

AT5G08520.1 Duplicated homeodomain-like superfamily protein2.7e-1344.05Show/hide
Query:  ATQGGVNSSDRKS----TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASIHDTDNV
        + Q G + SD++      W+  EH+L L+G+  YGKG+W+ I+ N V+T+T  QVASHAQKYF   +   K  +R+SIHD  +V
Subjt:  ATQGGVNSSDRKS----TWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYF---DHKGKKSKRASIHDTDNV

AT5G58900.1 Homeodomain-like transcriptional regulator2.5e-1455.22Show/hide
Query:  WSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK---GKKSKRASIHDTDNVD
        W+  EHKL L+G++ YGKG+W+ I+ N VIT+T  QVASHAQKYF  +   GK  +RASIHD   V+
Subjt:  WSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASHAQKYFDHK---GKKSKRASIHDTDNVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGAGAAACAACTTCCAATCTTCGTTTGATGCGTCGAGCATTCCACATCCCGATCCGAATCGTCCGACACCAACGGTTAACCCAAACGAGATGTCCCAATTCGA
TCAACTTGATCCAGTCCTTTTACGTTTCATTCAAAGGGACGACATGGAACTTCATGAGTTATTGAAGGCATTGTTATGGCCTCTAAAATCGAATGCTCATTTAAATTTTA
AGCTTACACCGTCCATTATTCCAAATCTTGATCCAAATCTATATCCAATGAGGCGTATCGAGATGCCCAGATTAGGTTCGACCGAAAATGCAGTGTTTGAGCAGCCATGC
ACGACAATGCCTCCACCCCCGTTACCGCCACAGAATCAACCGAACGATACTGCGATTAACCGCACTGGTCTTCTTTCCGACATCGTCAATTTTTGCTCCAATAATGAAAT
ACATCTTTCGACGGCGTCTTCGCCGAAAATTCTACTGTCGAGCAATGGAGCTGTAGCTGCGACTCAAGGCGGAGTGAACTCATCCGACAGAAAGAGTACATGGAGTCATC
ACGAGCACAAGCTACTTTTAGTAGGGATGCAGATATATGGGAAGGGTGAATGGAAGAAGATTGCAAATAATGTAGTGATTACAAAAACATATAAACAAGTGGCTAGCCAT
GCACAAAAATACTTTGATCACAAGGGAAAGAAGTCGAAGAGGGCGAGCATTCATGATACCGATAATGTCGATCGCAGGTTATTATCGCAGGTTCGTGCTCGGCTAGGACT
ATCCTATAGCCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGAGAAACAACTTCCAATCTTCGTTTGATGCGTCGAGCATTCCACATCCCGATCCGAATCGTCCGACACCAACGGTTAACCCAAACGAGATGTCCCAATTCGA
TCAACTTGATCCAGTCCTTTTACGTTTCATTCAAAGGGACGACATGGAACTTCATGAGTTATTGAAGGCATTGTTATGGCCTCTAAAATCGAATGCTCATTTAAATTTTA
AGCTTACACCGTCCATTATTCCAAATCTTGATCCAAATCTATATCCAATGAGGCGTATCGAGATGCCCAGATTAGGTTCGACCGAAAATGCAGTGTTTGAGCAGCCATGC
ACGACAATGCCTCCACCCCCGTTACCGCCACAGAATCAACCGAACGATACTGCGATTAACCGCACTGGTCTTCTTTCCGACATCGTCAATTTTTGCTCCAATAATGAAAT
ACATCTTTCGACGGCGTCTTCGCCGAAAATTCTACTGTCGAGCAATGGAGCTGTAGCTGCGACTCAAGGCGGAGTGAACTCATCCGACAGAAAGAGTACATGGAGTCATC
ACGAGCACAAGCTACTTTTAGTAGGGATGCAGATATATGGGAAGGGTGAATGGAAGAAGATTGCAAATAATGTAGTGATTACAAAAACATATAAACAAGTGGCTAGCCAT
GCACAAAAATACTTTGATCACAAGGGAAAGAAGTCGAAGAGGGCGAGCATTCATGATACCGATAATGTCGATCGCAGGTTATTATCGCAGGTTCGTGCTCGGCTAGGACT
ATCCTATAGCCAGTGA
Protein sequenceShow/hide protein sequence
MEMRNNFQSSFDASSIPHPDPNRPTPTVNPNEMSQFDQLDPVLLRFIQRDDMELHELLKALLWPLKSNAHLNFKLTPSIIPNLDPNLYPMRRIEMPRLGSTENAVFEQPC
TTMPPPPLPPQNQPNDTAINRTGLLSDIVNFCSNNEIHLSTASSPKILLSSNGAVAATQGGVNSSDRKSTWSHHEHKLLLVGMQIYGKGEWKKIANNVVITKTYKQVASH
AQKYFDHKGKKSKRASIHDTDNVDRRLLSQVRARLGLSYSQ