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Sed0021777 (gene) of Chayote v1 genome

Gene IDSed0021777
OrganismSechium edule (Chayote v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationLG12:30963916..30964556
RNA-Seq ExpressionSed0021777
SyntenySed0021777
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045262.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.6e-1743.88Show/hide
Query:  TFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF
        TF  IG  CGGL++V + T     LIEA LK+  NY GF+P N+ I D +G +F++Q V+   G+W++ +N K+HGT    AA  FD  +P SE + F
Subjt:  TFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF

KAA0056838.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.5e-1745Show/hide
Query:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF
        Y TF HIG+ CGG L+V K T Q  +LI+A +KV  NY GF+P +I I D+ G  F++ TV P   RW+V +N ++HG+    AA  FD H+  +E Y +
Subjt:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.3e-1745Show/hide
Query:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF
        Y TF HIG+ CGG L+V K T Q  +LI+A +KV  NY GF+P +I I D+ G  F++ TV P   RW+V +N ++HG+    AA  FD H+  +E Y +
Subjt:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF

TYK03139.1 hypothetical protein E5676_scaffold11G00140 [Cucumis melo var. makuwa]1.1e-1740.98Show/hide
Query:  TFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNFK-
        TF  IG  CGGL++V + T     LIEA +KV  NY GF+P N+ I D++G +F +Q V+   G+W++ +N ++HGT    AA  FD  +PNSE + FK 
Subjt:  TFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNFK-

Query:  VHIVYP--RSCDSAGKGQPTTD
        +  + P   S  S G+   T D
Subjt:  VHIVYP--RSCDSAGKGQPTTD

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.3e-1745Show/hide
Query:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF
        Y TF HIG+ CGG L+V K T Q  +LI+A +KV  NY GF+P +I I D+ G  F++ TV P   RW+V +N ++HG+    AA  FD H+  +E Y +
Subjt:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF

TrEMBL top hitse value%identityAlignment
A0A5A7US62 LINE-1 retrotransposable element ORF2 protein2.1e-1745Show/hide
Query:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF
        Y TF HIG+ CGG L+V K T Q  +LI+A +KV  NY GF+P +I I D+ G  F++ TV P   RW+V +N ++HG+    AA  FD H+  +E Y +
Subjt:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF

A0A5D3BKT8 LINE-1 retrotransposable element ORF2 protein1.2e-1745Show/hide
Query:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF
        Y TF HIG+ CGG L+V K T Q  +LI+A +KV  NY GF+P +I I D+ G  F++ TV P   RW+V +N ++HG+    AA  FD H+  +E Y +
Subjt:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF

A0A5D3BYI6 Uncharacterized protein5.5e-1840.98Show/hide
Query:  TFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNFK-
        TF  IG  CGGL++V + T     LIEA +KV  NY GF+P N+ I D++G +F +Q V+   G+W++ +N ++HGT    AA  FD  +PNSE + FK 
Subjt:  TFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNFK-

Query:  VHIVYP--RSCDSAGKGQPTTD
        +  + P   S  S G+   T D
Subjt:  VHIVYP--RSCDSAGKGQPTTD

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein2.1e-1745Show/hide
Query:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF
        Y TF HIG+ CGG L+V K T Q  +LI+A +KV  NY GF+P +I I D+ G  F++ TV P   RW+V +N ++HG+    AA  FD H+  +E Y +
Subjt:  YATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein4.7e-1743.88Show/hide
Query:  TFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF
        TF  IG  CGGL++V + T     LIEA LK+  NY GF+P N+ I D +G +F++Q V+   G+W++ +N K+HGT    AA  FD  +P SE + F
Subjt:  TFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGACTGGCCAAAAATCAGAGAAGTTCTACGCCACCTTCAACCACATCGGTAACATTTGTGGTGGGCTCCTTGAGGTGGGAAAATCCACAGCACAAGGGATCGAACT
TATTGAAGCTCATCTAAAGGTCACCAGAAATTATAGGGGCTTCATTCCTATCAATATTGGAATCGAAGATTCAGATGGAGTTCAATTTGTGATTCAAACTGTGTCGCCAG
TTGTCGGCCGATGGATCGTTGGCCAAAACCCTAAAATCCATGGTACTGTTTCCCACGACGCTGCAGTACGTTTCGATATTCACGACCCAAACTCTGAACACTACAACTTC
AAGGTTCATATCGTATACCCTCGGTCCTGTGATTCTGCTGGCAAAGGACAACCTACAACCGACTCTACATAG
mRNA sequenceShow/hide mRNA sequence
ATGACGACTGGCCAAAAATCAGAGAAGTTCTACGCCACCTTCAACCACATCGGTAACATTTGTGGTGGGCTCCTTGAGGTGGGAAAATCCACAGCACAAGGGATCGAACT
TATTGAAGCTCATCTAAAGGTCACCAGAAATTATAGGGGCTTCATTCCTATCAATATTGGAATCGAAGATTCAGATGGAGTTCAATTTGTGATTCAAACTGTGTCGCCAG
TTGTCGGCCGATGGATCGTTGGCCAAAACCCTAAAATCCATGGTACTGTTTCCCACGACGCTGCAGTACGTTTCGATATTCACGACCCAAACTCTGAACACTACAACTTC
AAGGTTCATATCGTATACCCTCGGTCCTGTGATTCTGCTGGCAAAGGACAACCTACAACCGACTCTACATAG
Protein sequenceShow/hide protein sequence
MTTGQKSEKFYATFNHIGNICGGLLEVGKSTAQGIELIEAHLKVTRNYRGFIPINIGIEDSDGVQFVIQTVSPVVGRWIVGQNPKIHGTVSHDAAVRFDIHDPNSEHYNF
KVHIVYPRSCDSAGKGQPTTDST