CuGenDBv2

Gene ID	Sed0021805
Organism	Sechium edule (Chayote v1)
Description	protein AATF-like
Genome location	LG02:52575322..52576742
RNA-Seq Expression	Sed0021805
Synteny	Sed0021805
Gene Ontology terms	NA
InterPro domains	IPR039223 - Protein AATF/Bfr2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6597039.1 Protein AATF, partial [Cucurbita argyrosperma subsp. sororia]

2.9e-16

56.36

Show/hide

Query:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET
        R KSIDKWH KTQVTTGAAAIK  LQA NQ                                VL E E+K QEAQA+GGDPE LEDSEFYQQLL +FFET
Subjt:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET

Query:  IDPNSSSRDF
        IDPNSS   F
Subjt:  IDPNSSSRDF

KAG7028514.1 Protein AATF [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-16

56.36

Show/hide

Query:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET
        R KSIDKWH KTQVTTGAAAIK  LQA NQ                                VL E E+K QEAQA+GGDPE LEDSEFYQQLL +FFET
Subjt:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET

Query:  IDPNSSSRDF
        IDPNSS   F
Subjt:  IDPNSSSRDF

XP_022974841.1 putative uncharacterized protein DDB_G0270496 isoform X4 [Cucurbita maxima]

3.8e-16

56.36

Show/hide

Query:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET
        R KSIDKWH KTQVTTGAAAIK  LQA NQ                                VL E ESK QEAQ +GGDPE LEDSEFYQQLL +FFET
Subjt:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET

Query:  IDPNSSSRDF
        IDPNSS   F
Subjt:  IDPNSSSRDF

XP_022975306.1 protein AATF-like [Cucurbita maxima]

3.8e-16

56.36

Show/hide

Query:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET
        R KSIDKWH KTQVTTGAAAIK  LQA NQ                                VL E ESK QEAQ +GGDPE LEDSEFYQQLL +FFET
Subjt:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET

Query:  IDPNSSSRDF
        IDPNSS   F
Subjt:  IDPNSSSRDF

XP_023540881.1 putative uncharacterized protein DDB_G0270496 [Cucurbita pepo subsp. pepo]

1.3e-16

57.27

Show/hide

Query:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET
        R KSIDKWH KTQVTTGAAAIK  LQA NQ                                VL E ESK QEAQA+GGDPE LEDSEFYQQLL +FFET
Subjt:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET

Query:  IDPNSSSRDF
        IDPNSS   F
Subjt:  IDPNSSSRDF

TrEMBL top hits

e value

%identity

Alignment

A0A6J1ICJ2 Uncharacterized protein

1.8e-16

56.36

Show/hide

Query:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET
        R KSIDKWH KTQVTTGAAAIK  LQA NQ                                VL E ESK QEAQ +GGDPE LEDSEFYQQLL +FFET
Subjt:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET

Query:  IDPNSSSRDF
        IDPNSS   F
Subjt:  IDPNSSSRDF

A0A6J1IDT1 protein AATF-like

1.8e-16

56.36

Show/hide

Query:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET
        R KSIDKWH KTQVTTGAAAIK  LQA NQ                                VL E ESK QEAQ +GGDPE LEDSEFYQQLL +FFET
Subjt:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET

Query:  IDPNSSSRDF
        IDPNSS   F
Subjt:  IDPNSSSRDF

A0A6J1IF02 Uncharacterized protein

1.8e-16

56.36

Show/hide

Query:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET
        R KSIDKWH KTQVTTGAAAIK  LQA NQ                                VL E ESK QEAQ +GGDPE LEDSEFYQQLL +FFET
Subjt:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET

Query:  IDPNSSSRDF
        IDPNSS   F
Subjt:  IDPNSSSRDF

A0A6J1IHH7 Uncharacterized protein

1.8e-16

56.36

Show/hide

Query:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET
        R KSIDKWH KTQVTTGAAAIK  LQA NQ                                VL E ESK QEAQ +GGDPE LEDSEFYQQLL +FFET
Subjt:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET

Query:  IDPNSSSRDF
        IDPNSS   F
Subjt:  IDPNSSSRDF

A0A6J1IIQ5 Uncharacterized protein

1.8e-16

56.36

Show/hide

Query:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET
        R KSIDKWH KTQVTTGAAAIK  LQA NQ                                VL E ESK QEAQ +GGDPE LEDSEFYQQLL +FFET
Subjt:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET

Query:  IDPNSSSRDF
        IDPNSS   F
Subjt:  IDPNSSSRDF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G61330.1 rRNA processing protein-related

1.5e-10

38.71

Show/hide

Query:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET
        R K++DKW  KTQVTTGAAAIK  L A NQ                                V  E      E + + GDPE +ED+EFY+QLL +F ET
Subjt:  RLKSIDKWHGKTQVTTGAAAIKDSLQASNQ--------------------------------VLDEVESKGQEAQAKGGDPEHLEDSEFYQQLL-DFFET

Query:  IDPNSSSRDFLIFFNELNFQNQNR
        IDP SS      F+    FQ + R
Subjt:  IDPNSSSRDFLIFFNELNFQNQNR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTAACCGATTGTCTTCAATTCTCTCCATGACTATGTTAAATGAATATTTAGGAGGGAGGGTGTATGGAAAGGTATGCAATATAGCTGGATCGTATGAGATTTATCT
AGCTTCTAGGGAATGGATATTGAGGAAAAAGGAGGTGTTGGGGGTAATGTTGCAGGATAGGTGCTTCCAGAGACTTAAGTCAATTGACAAATGGCATGGTAAAACACAAG
TTACAACAGGTGCTGCAGCTATTAAAGACAGCTTGCAGGCCTCCAATCAGGTTCTCGATGAAGTTGAGAGCAAGGGGCAGGAAGCACAAGCTAAAGGAGGCGATCCTGAA
CATCTGGAGGACTCTGAATTCTATCAGCAATTATTGGACTTCTTTGAGACGATTGATCCAAATTCATCTAGTAGAGATTTTCTAATATTCTTTAATGAGCTTAATTTTCA
AAACCAAAATAGAATTAATATGAAAAAAAAACTACCAAGAGATTTCGGCATTTTGATTGTGATGGCTGATTGGATTGGACTTGGTTACGAGTTCATGAAAAGATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MFNRLSSILSMTMLNEYLGGRVYGKVCNIAGSYEIYLASREWILRKKEVLGVMLQDRCFQRLKSIDKWHGKTQVTTGAAAIKDSLQASNQVLDEVESKGQEAQAKGGDPE
HLEDSEFYQQLLDFFETIDPNSSSRDFLIFFNELNFQNQNRINMKKKLPRDFGILIVMADWIGLGYEFMKR

Sed0021805 (gene) of Chayote v1 genome