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Sed0021823 (gene) of Chayote v1 genome

Gene IDSed0021823
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG02:9104769..9105125
RNA-Seq ExpressionSed0021823
SyntenySed0021823
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]5.7e-3772.03Show/hide
Query:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT
        MAE ERK+  +MK+++ERD EI  LK QMQ RET ESSQ+P  KV+DKGKN + E QPQ  STSVA LSVQQL D+ITN+IRAQ GGP Q+SF+YSKPYT
Subjt:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]2.2e-3671.19Show/hide
Query:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT
        MAE ERK+  +MK+++ERD EI  LK QMQ RET ESSQ+P  KV+DKGKN + E QPQ  STSVA LSVQQL D+IT++IRAQ GGP Q+SF+YSKPYT
Subjt:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.2e-3671.19Show/hide
Query:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT
        MAE ERK+  +MK+++ERD EI  LK QMQ RET ESSQ+P  KV+DKGKN + E QPQ  STSVA LSVQQL D+IT++IRAQ GGP Q+SF+YSKPYT
Subjt:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.2e-3671.19Show/hide
Query:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT
        MAE ERK+  +MK+++ERD EI  LK QMQ RET ESSQ+P  KV+DKGKN + E QPQ  STSVA LSVQQL D+IT++IRAQ GGP Q+SF+YSKPYT
Subjt:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]5.7e-3772.03Show/hide
Query:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT
        MAE ERK+  +MK+++ERD EI  LK QMQ RET ESSQ+P  KV+DKGKN + E QPQ  STSVA LSVQQL D+ITN+IRAQ GGP Q+SF+YSKPYT
Subjt:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

TrEMBL top hitse value%identityAlignment
A0A5A7U2G2 Ty3-gypsy retrotransposon protein3.7e-3467.8Show/hide
Query:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT
        MAE ERK+  +MK++EERD  I  L+ QM+ RET +SSQ+P  K  DKGKN + E QPQ  S SVA LSVQQL D+ITN+IRAQ GGP Q+SF+YSKPYT
Subjt:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

A0A5A7VCU1 Ty3-gypsy retrotransposon protein3.1e-3367.8Show/hide
Query:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT
        MAE ERK+  +MK++EERD EI  L+ QMQ RETVESSQ+   K  DKGKN + E QPQ  S SVA LSVQQL ++ITN+ RAQ GGP Q+SF+YSK YT
Subjt:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.4e-3366.95Show/hide
Query:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT
        MAE ERK+  +MK +EERD EI+ L+ QM+ RET ESSQ+P  K  DKGKN + E QPQ  S SVA LSVQQL D+I N+IRAQ GGP Q++F+YSK YT
Subjt:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

A0A5D3BZH8 Ty3-gypsy retrotransposon protein1.4e-3367.8Show/hide
Query:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT
        MAE ERK+  +MK++EERD EI  LK+QM+  ET ESSQ+P  K  DKGKN + E QPQ  S SVA LSVQQL D+I N+IRAQ GGP Q++F+YSKPYT
Subjt:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

A0A5D3DXI6 Ty3-gypsy retrotransposon protein3.7e-3467.8Show/hide
Query:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT
        MAE ERK+  +MK++EERD  I  L+ QM+ RET +SSQ+P  K  DKGKN + E QPQ  S SVA LSVQQL D+ITN+IRAQ GGP Q+SF+YSKPYT
Subjt:  MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAATAATTGAGGAAAGAGACTTAGAGATCGTTTACCTCAAAAATCAAATGCAGAACCGAGAGACGGTTGAATC
AAGCCAGAGTCCACATGAGAAAGTTAATGATAAAGGAAAGAACCCTCTCTTTGAAGCACAACCACAACTACACTCAACCTCAGTCGCTTTCTTGTCTGTCCAACAACTAC
ACGACCTAATCACGAACACTATTAGAGCTCAAGGTGGTGGGCCAGTTCAAAGTTCTTTTTTGTATTCCAAGCCATACACAAAGAGAATAGACAACTTAAGAATGCCTGCA
GGATACCAACCGCCTAAGTTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAGTTTGAAAGAAAGCTCGAGCAGATGATGAAAATAATTGAGGAAAGAGACTTAGAGATCGTTTACCTCAAAAATCAAATGCAGAACCGAGAGACGGTTGAATC
AAGCCAGAGTCCACATGAGAAAGTTAATGATAAAGGAAAGAACCCTCTCTTTGAAGCACAACCACAACTACACTCAACCTCAGTCGCTTTCTTGTCTGTCCAACAACTAC
ACGACCTAATCACGAACACTATTAGAGCTCAAGGTGGTGGGCCAGTTCAAAGTTCTTTTTTGTATTCCAAGCCATACACAAAGAGAATAGACAACTTAAGAATGCCTGCA
GGATACCAACCGCCTAAGTTCCAGTAG
Protein sequenceShow/hide protein sequence
MAEFERKLEQMMKIIEERDLEIVYLKNQMQNRETVESSQSPHEKVNDKGKNPLFEAQPQLHSTSVAFLSVQQLHDLITNTIRAQGGGPVQSSFLYSKPYTKRIDNLRMPA
GYQPPKFQ