CuGenDBv2

Gene ID	Sed0021847
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerases
Genome location	LG13:20971484..20974467
RNA-Seq Expression	Sed0021847
Synteny	Sed0021847
Gene Ontology terms	GO:0006352 - DNA-templated transcription, initiation (biological process) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR045113 - RNA polymerase Rpb7-like

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022940043.1 uncharacterized protein LOC111445794 isoform X1 [Cucurbita moschata]

1.0e-41

54.55

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Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV
        L+ ++H  +SKKVSQAV+RELGAMLLKFDE+F+GVLLAYEA  IDKS+K+ SGVHPYFGVTIKAKL LFSPK +ML        R      IVLGFASAV
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL-------DRITSLHDNVATDV
        ITDEDIR+EF HR              HHVIK+GT+VRF                          LEK SVEGSVT          DR + L D+VATDV
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL-------DRITSLHDNVATDV

Query:  NTILLNNNH
        N +LLNN+H
Subjt:  NTILLNNNH

XP_022940045.1 uncharacterized protein LOC111445794 isoform X2 [Cucurbita moschata]

1.0e-41

54.81

Show/hide

Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV
        L+ ++H  +SKKVSQAV+RELGAMLLKFDE+F+GVLLAYEA  IDKS+K+ SGVHPYFGVTIKAKL LFSPK +ML        R      IVLGFASAV
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL------DRITSLHDNVATDVN
        ITDEDIR+EF HR              HHVIK+GT+VRF                          LEK SVEGSVT         DR + L D+VATDVN
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL------DRITSLHDNVATDVN

Query:  TILLNNNH
         +LLNN+H
Subjt:  TILLNNNH

XP_022982461.1 uncharacterized protein LOC111481277 isoform X1 [Cucurbita maxima]

1.8e-41

54.07

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Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV
        L+ ++H  +SKKVSQAV+R+LGAMLLKFDE+F+GVLLAYEA  IDKS+K+ SGVHPYFGVTIKAKL LFSPK +ML        R      IVLGFASAV
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL-------DRITSLHDNVATDV
        ITDEDIR+EF HR              HHVIK+GT+VRF                          LEK SVEGSVT+         DR + L D+VATDV
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL-------DRITSLHDNVATDV

Query:  NTILLNNNH
        N +LLNN+H
Subjt:  NTILLNNNH

XP_022982463.1 uncharacterized protein LOC111481277 isoform X2 [Cucurbita maxima]

2.3e-41

54.33

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Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV
        L+ ++H  +SKKVSQAV+R+LGAMLLKFDE+F+GVLLAYEA  IDKS+K+ SGVHPYFGVTIKAKL LFSPK +ML        R      IVLGFASAV
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL------DRITSLHDNVATDVN
        ITDEDIR+EF HR              HHVIK+GT+VRF                          LEK SVEGSVT         DR + L D+VATDVN
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL------DRITSLHDNVATDVN

Query:  TILLNNNH
         +LLNN+H
Subjt:  TILLNNNH

XP_023523351.1 uncharacterized protein LOC111787571 [Cucurbita pepo subsp. pepo]

1.6e-42

55.02

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Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV
        L+ ++H  +SKKVSQAV+RELGAMLLKFDE+F+GVLLAYEA  IDKS+K+ SGVHPYFGVTIKAKL LFSPK +ML        R      IVLGFASAV
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTD-------ILDRITSLHDNVATDV
        ITDEDIRDEF HR              HHVIK+GT+VRF                          LEK SVEGSVT+         DR + L D+VATDV
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTD-------ILDRITSLHDNVATDV

Query:  NTILLNNNH
        N +LLNN+H
Subjt:  NTILLNNNH

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D5Y9 uncharacterized protein LOC111016757

3.3e-41

52.15

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Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV
        L+ ++H  +SKKVSQAV+RELGAMLLKFDE+F+GVLLAY+AK  DKS+K+ SGVHPYFGVT+KAKL LFSPK +ML        R      IVLGFASA 
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDILDRITS-------LHDNVATDV
        ITDEDIRDEF HR              HHVIK+GT++RF                          LEK S+EGSVTD   + T        L D+VATDV
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDILDRITS-------LHDNVATDV

Query:  NTILLNNNH
        N ++LNN+H
Subjt:  NTILLNNNH

A0A6J1FN75 uncharacterized protein LOC111445794 isoform X1

5.0e-42

54.55

Show/hide

Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV
        L+ ++H  +SKKVSQAV+RELGAMLLKFDE+F+GVLLAYEA  IDKS+K+ SGVHPYFGVTIKAKL LFSPK +ML        R      IVLGFASAV
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL-------DRITSLHDNVATDV
        ITDEDIR+EF HR              HHVIK+GT+VRF                          LEK SVEGSVT          DR + L D+VATDV
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL-------DRITSLHDNVATDV

Query:  NTILLNNNH
        N +LLNN+H
Subjt:  NTILLNNNH

A0A6J1FPG3 uncharacterized protein LOC111445794 isoform X2

5.0e-42

54.81

Show/hide

Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV
        L+ ++H  +SKKVSQAV+RELGAMLLKFDE+F+GVLLAYEA  IDKS+K+ SGVHPYFGVTIKAKL LFSPK +ML        R      IVLGFASAV
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL------DRITSLHDNVATDVN
        ITDEDIR+EF HR              HHVIK+GT+VRF                          LEK SVEGSVT         DR + L D+VATDVN
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL------DRITSLHDNVATDVN

Query:  TILLNNNH
         +LLNN+H
Subjt:  TILLNNNH

A0A6J1IWP0 uncharacterized protein LOC111481277 isoform X1

8.6e-42

54.07

Show/hide

Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV
        L+ ++H  +SKKVSQAV+R+LGAMLLKFDE+F+GVLLAYEA  IDKS+K+ SGVHPYFGVTIKAKL LFSPK +ML        R      IVLGFASAV
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL-------DRITSLHDNVATDV
        ITDEDIR+EF HR              HHVIK+GT+VRF                          LEK SVEGSVT+         DR + L D+VATDV
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL-------DRITSLHDNVATDV

Query:  NTILLNNNH
        N +LLNN+H
Subjt:  NTILLNNNH

A0A6J1J4W1 uncharacterized protein LOC111481277 isoform X2

1.1e-41

54.33

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Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV
        L+ ++H  +SKKVSQAV+R+LGAMLLKFDE+F+GVLLAYEA  IDKS+K+ SGVHPYFGVTIKAKL LFSPK +ML        R      IVLGFASAV
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADML-------FRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL------DRITSLHDNVATDVN
        ITDEDIR+EF HR              HHVIK+GT+VRF                          LEK SVEGSVT         DR + L D+VATDVN
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVRF--------------------------LEKTSVEGSVTDIL------DRITSLHDNVATDVN

Query:  TILLNNNH
         +LLNN+H
Subjt:  TILLNNNH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G75670.1 DNA-directed RNA polymerases

4.8e-21

40.58

Show/hide

Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKAD-------MLFRLNQYMFIVLGFASAV
        L+ FIH  +S+ V Q + REL ++L +++E F GVLLAY+A    K +K+ +G+HPYFGV +  +L LF PK         +         IVLGF++AV
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKAD-------MLFRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVR
        ITD DIR+EF +R               H +KLGT++R
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVR

AT1G75670.2 DNA-directed RNA polymerases

4.8e-21

40.58

Show/hide

Query:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKAD-------MLFRLNQYMFIVLGFASAV
        L+ FIH  +S+ V Q + REL ++L +++E F GVLLAY+A    K +K+ +G+HPYFGV +  +L LF PK         +         IVLGF++AV
Subjt:  LLTFIH--RSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKAD-------MLFRLNQYMFIVLGFASAV

Query:  ITDEDIRDEFAHRA-------------HHVIKLGTVVR
        ITD DIR+EF +R               H +KLGT++R
Subjt:  ITDEDIRDEFAHRA-------------HHVIKLGTVVR

Sequences

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CDS sequence

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ATGCCAATATGGTTATTAACGTTCATCCATCGAAGTAAGAAAGTTTCGCAGGCGGTGATTCGAGAGCTCGGCGCTATGCTTCTGAAATTTGATGAAAAATTTCAAGGTGT
GCTTCTGGCTTATGAGGCAAAAAGTATTGATAAGAGTTCAAAGTTAACATCCGGAGTGCATCCCTATTTTGGCGTGACAATAAAGGCAAAGCTATTTCTTTTTTCTCCAA
AAGCAGACATGCTTTTTAGGTTGAATCAATACATGTTTATTGTCTTAGGTTTTGCTTCTGCTGTAATAACCGATGAAGACATTCGCGATGAATTCGCGCATAGAGCGCAC
CATGTGATAAAACTTGGGACAGTTGTACGATTTTTGGAAAAGACTTCAGTTGAAGGTTCAGTGACAGATATTTTGGATCGTATCACATCGTTGCACGATAACGTTGCCAC
TGATGTAAATACTATTCTCTTGAACAATAACCACCATCAGTGA

mRNA sequence

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Protein sequence

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MPIWLLTFIHRSKKVSQAVIRELGAMLLKFDEKFQGVLLAYEAKSIDKSSKLTSGVHPYFGVTIKAKLFLFSPKADMLFRLNQYMFIVLGFASAVITDEDIRDEFAHRAH
HVIKLGTVVRFLEKTSVEGSVTDILDRITSLHDNVATDVNTILLNNNHHQ

Sed0021847 (gene) of Chayote v1 genome