; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0021882 (gene) of Chayote v1 genome

Gene IDSed0021882
OrganismSechium edule (Chayote v1)
Descriptionbiogenesis of lysosome-related organelles complex 1 subunit 2
Genome locationLG06:10893594..10895856
RNA-Seq ExpressionSed0021882
SyntenySed0021882
Gene Ontology termsNA
InterPro domainsIPR019269 - Biogenesis of lysosome-related organelles complex-1, subunit 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607085.1 Biogenesis of lysosome-related organelles complex 1 subunit 2, partial [Cucurbita argyrosperma subsp. sororia]4.0e-4990.91Show/hide
Query:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI
        MAEK E+Q  N DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMN+RVAEEYKG GDVASGMRVFVEQLKAKSGGFDEY NQIEKIENQVTEFEAVI
Subjt:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI

Query:  SMLDKQVSMLESKVLSVCQNT
        SMLDK +SMLESKVLSVCQN+
Subjt:  SMLDKQVSMLESKVLSVCQNT

XP_004137147.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus]2.6e-4890.16Show/hide
Query:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI
        MA+K EE+  NRD+LAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKGFGDVASGMRVFVEQLK+KSGGFDEY NQIEKIE+QVTEFEAVI
Subjt:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI

Query:  SMLDKQVSMLESKVLSVCQNTP
        SMLDK VSMLESKVLSVCQNTP
Subjt:  SMLDKQVSMLESKVLSVCQNTP

XP_022949044.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschata]2.3e-4991.74Show/hide
Query:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI
        MAEK E+Q  N DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLKAKSGGFDEY NQIEKIENQVTEFEAVI
Subjt:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI

Query:  SMLDKQVSMLESKVLSVCQNT
        SMLDK +SMLESKVLSVCQN+
Subjt:  SMLDKQVSMLESKVLSVCQNT

XP_023525241.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita pepo subsp. pepo]8.8e-4990.91Show/hide
Query:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI
        MAEK E+Q  N DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKG G+VASGMRVFVEQLKAKSGGFDEY NQIEKIENQVTEFEAVI
Subjt:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI

Query:  SMLDKQVSMLESKVLSVCQNT
        SMLDK +SMLESKVLSVCQN+
Subjt:  SMLDKQVSMLESKVLSVCQNT

XP_038880795.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida]3.0e-4991.8Show/hide
Query:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI
        MA+K EEQ  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLE+MNLRVAEEYKGFGDVASGMRVFVEQLK+KSGGFDEY +QIEKIE+QVTEFEAVI
Subjt:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI

Query:  SMLDKQVSMLESKVLSVCQNTP
        SMLDK VSMLESKVLSVCQNTP
Subjt:  SMLDKQVSMLESKVLSVCQNTP

TrEMBL top hitse value%identityAlignment
A0A0A0KW18 Uncharacterized protein1.2e-4890.16Show/hide
Query:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI
        MA+K EE+  NRD+LAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKGFGDVASGMRVFVEQLK+KSGGFDEY NQIEKIE+QVTEFEAVI
Subjt:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI

Query:  SMLDKQVSMLESKVLSVCQNTP
        SMLDK VSMLESKVLSVCQNTP
Subjt:  SMLDKQVSMLESKVLSVCQNTP

A0A1S3C0T0 biogenesis of lysosome-related organelles complex 1 subunit 22.3e-4788.52Show/hide
Query:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI
        MA+K EE+  NRDELAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN RVAEEYKG+GDVASGMRVFVEQLK+KSGGFDEY +QIEKIE+QVTEFEAVI
Subjt:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI

Query:  SMLDKQVSMLESKVLSVCQNTP
        SMLDK VSMLESKVLSVCQNTP
Subjt:  SMLDKQVSMLESKVLSVCQNTP

A0A438IMQ6 Biogenesis of lysosome-related organelles complex 1 subunit 21.9e-3673.73Show/hide
Query:  GEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLD
        G+E++  RD LAESLN+ FTSVS M+K  L G++N L LLEKMNLRVAEEYKGFGDVASG+RVFVEQLKAKSG FDEY  QI+ IE QVTEFEAVISMLD
Subjt:  GEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLD

Query:  KQVSMLESKVLSVCQNTP
        K VS+LESK+ SV Q  P
Subjt:  KQVSMLESKVLSVCQNTP

A0A6J1GBP4 biogenesis of lysosome-related organelles complex 1 subunit 21.1e-4991.74Show/hide
Query:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI
        MAEK E+Q  N DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLKAKSGGFDEY NQIEKIENQVTEFEAVI
Subjt:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI

Query:  SMLDKQVSMLESKVLSVCQNT
        SMLDK +SMLESKVLSVCQN+
Subjt:  SMLDKQVSMLESKVLSVCQNT

A0A6J1KEZ0 biogenesis of lysosome-related organelles complex 1 subunit 21.1e-4991.74Show/hide
Query:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI
        MAEK E+Q  N DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKG GDVASGMRVFVEQLKAKSGGFDEY NQIEKIENQVTEFEAVI
Subjt:  MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVI

Query:  SMLDKQVSMLESKVLSVCQNT
        SMLDK +SMLESKVLSVCQN+
Subjt:  SMLDKQVSMLESKVLSVCQNT

SwissProt top hitse value%identityAlignment
F4K657 Biogenesis of lysosome-related organelles complex 1 subunit 21.9e-3065.38Show/hide
Query:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSML
        +RD+LAESL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+K+KSGG DE+  Q++ IE QV+EFEAVIS+LD+ VS+L
Subjt:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSML

Query:  ESKV
        ESK+
Subjt:  ESKV

Q54Y67 Biogenesis of lysosome-related organelles complex 1 subunit 25.4e-0933.33Show/hide
Query:  DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLES
        ++L  S  E FT VS  IKS+L  + +   LL +MN   + +Y+   +V  G+ VF+  LK K   F  Y ++I +++  VT+ E  + +LD+    LE 
Subjt:  DELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSMLES

Query:  KVLSV
        KV ++
Subjt:  KVLSV

Arabidopsis top hitse value%identityAlignment
AT5G49550.1 Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1.1.4e-3165.38Show/hide
Query:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSML
        +RD+LAESL   FTSVS M+KS+L G++N L LLEKMNLRVA EY   GDVA+G+RVF EQ+K+KSGG DE+  Q++ IE QV+EFEAVIS+LD+ VS+L
Subjt:  NRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSML

Query:  ESKV
        ESK+
Subjt:  ESKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGAAAGGGGAAGAACAATCGCTTAACAGGGACGAGCTCGCCGAATCGCTCAACGAATTCTTCACCAGCGTATCTGAAATGATCAAATCGGATCTTCTTGGATC
AAGCAATCAGCTGGCACTTTTAGAGAAAATGAATCTCAGGGTGGCAGAAGAGTACAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGG
CCAAGAGTGGTGGCTTTGATGAGTACAATAACCAGATTGAGAAAATTGAAAATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCAGGTTTCCATGCTG
GAGTCTAAAGTTTTATCAGTTTGTCAAAACACGCCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATAAAAACTAAATCCAAACGAGCTATTATTTTCAACCCCTCTATAAAATTCATATCCAATCGAACTATTATTTGCAACCCCTCCACAAATAACCACATCCAAATGAGCTA
TTACTAAATTTCTAATCACTTCCAGATAACCTCTCAATTTTAATCGCTCTACGTTACCGCTCTACAAAATAACATCCAAACAGCCCCTAACGGTGTTAGATTTTTCGTTC
GCTGTTTCCCCACCCGTCGTTCGAGATCCAGTTGCGGTTCCCTGTCCCGACGAGGCGACGGCGACGGCGAGTGATTACAATTCCTGGAAGGTTTTATGGCGGAGAAAGGG
GAAGAACAATCGCTTAACAGGGACGAGCTCGCCGAATCGCTCAACGAATTCTTCACCAGCGTATCTGAAATGATCAAATCGGATCTTCTTGGATCAAGCAATCAGCTGGC
ACTTTTAGAGAAAATGAATCTCAGGGTGGCAGAAGAGTACAAAGGTTTTGGCGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAATTGAAGGCCAAGAGTGGTGGCT
TTGATGAGTACAATAACCAGATTGAGAAAATTGAAAATCAGGTGACTGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCAGGTTTCCATGCTGGAGTCTAAAGTTTTA
TCAGTTTGTCAAAACACGCCTTCATGAATAAATCTCTATTTTAAGTTCAAATTTAAGAACGGTTCCTTTCAGAATGTTCCTGCTTCTACATTGCTTAGATTGTCAAATCT
TTTATGATATCTCATTCACTGGCAGTTGATGATGCTGAAGAGTTGACATCTTTGCTTTCTGTTCCTGCTGAATCTGTAGTGATTTTT
Protein sequenceShow/hide protein sequence
MAEKGEEQSLNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGFGDVASGMRVFVEQLKAKSGGFDEYNNQIEKIENQVTEFEAVISMLDKQVSML
ESKVLSVCQNTPS