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Sed0021888 (gene) of Chayote v1 genome

Gene IDSed0021888
OrganismSechium edule (Chayote v1)
Descriptionzf-CCHC_4 domain-containing protein
Genome locationLG11:25269231..25270458
RNA-Seq ExpressionSed0021888
SyntenySed0021888
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040131.1 hypothetical protein E6C27_scaffold366G001060 [Cucumis melo var. makuwa]3.8e-0429.37Show/hide
Query:  WRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFA-------------ETAKILGQRIGDIEEFDWD--
        W++L L + E    + ++    +S++N  L    KVL  R  N+EAFR++MKSVW VH +T+I  A             E  +I     G ++  ++D  
Subjt:  WRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFA-------------ETAKILGQRIGDIEEFDWD--

Query:  -GTVDWMGPVLRVRLEAPSGTNGTLM
         G V  +  V+ +  +  SG  G  M
Subjt:  -GTVDWMGPVLRVRLEAPSGTNGTLM

TXG49363.1 hypothetical protein EZV62_025238 [Acer yangbiense]5.8e-0533.64Show/hide
Query:  EEISEKWRKLKLIDKEETKVDL-DEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGP
        EEI++    L L  KEE    + D +K +  K+   L +  KVLSN+ +N EAFR +M  +W    ++ ++  E  + +GQRIGD+++ D   T +  G 
Subjt:  EEISEKWRKLKLIDKEETKVDL-DEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGP

Query:  VLRVRLE
         +R+++E
Subjt:  VLRVRLE

TXG73186.1 hypothetical protein EZV62_001765 [Acer yangbiense]2.2e-0442.86Show/hide
Query:  LSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRL
        LS+  KVL+NR +N EAF+ V++ +W+V     IE     + LG  IGD+EE D   + D  G  LRVR+
Subjt:  LSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRL

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]2.2e-0439.44Show/hide
Query:  MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIE
        M+EI++ W   K  + E   V +D  K  ++ +N +L V AK+ +++ ++ EA R+VMKSVWRVH+ T+ E
Subjt:  MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIE

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]5.8e-0523.7Show/hide
Query:  MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFA---------------------------
        M++I++ W    LI +EE  + +D  K  ++ +N +L    K+  ++ + VEAF +VMK VW++H+ T+IE A                           
Subjt:  MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFA---------------------------

Query:  ---------------------------------------ETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRLE
                                               + AK LG R+G++EE D   + DW+ P L VR++
Subjt:  ---------------------------------------ETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRLE

TrEMBL top hitse value%identityAlignment
A0A5A7TEP2 Uncharacterized protein1.8e-0429.37Show/hide
Query:  WRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFA-------------ETAKILGQRIGDIEEFDWD--
        W++L L + E    + ++    +S++N  L    KVL  R  N+EAFR++MKSVW VH +T+I  A             E  +I     G ++  ++D  
Subjt:  WRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFA-------------ETAKILGQRIGDIEEFDWD--

Query:  -GTVDWMGPVLRVRLEAPSGTNGTLM
         G V  +  V+ +  +  SG  G  M
Subjt:  -GTVDWMGPVLRVRLEAPSGTNGTLM

A0A5C7GX84 zf-CCHC_4 domain-containing protein2.8e-0533.64Show/hide
Query:  EEISEKWRKLKLIDKEETKVDL-DEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGP
        EEI++    L L  KEE    + D +K +  K+   L +  KVLSN+ +N EAFR +M  +W    ++ ++  E  + +GQRIGD+++ D   T +  G 
Subjt:  EEISEKWRKLKLIDKEETKVDL-DEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGP

Query:  VLRVRLE
         +R+++E
Subjt:  VLRVRLE

A0A5C7IXL6 CCHC-type domain-containing protein1.1e-0442.86Show/hide
Query:  LSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRL
        LS+  KVL+NR +N EAF+ V++ +W+V     IE     + LG  IGD+EE D   + D  G  LRVR+
Subjt:  LSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRL

A0A6J1D765 uncharacterized protein LOC1110179021.1e-0439.44Show/hide
Query:  MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIE
        M+EI++ W   K  + E   V +D  K  ++ +N +L V AK+ +++ ++ EA R+VMKSVWRVH+ T+ E
Subjt:  MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIE

A0A6J1DVS4 uncharacterized protein LOC1110235552.8e-0523.7Show/hide
Query:  MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFA---------------------------
        M++I++ W    LI +EE  + +D  K  ++ +N +L    K+  ++ + VEAF +VMK VW++H+ T+IE A                           
Subjt:  MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFA---------------------------

Query:  ---------------------------------------ETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRLE
                                               + AK LG R+G++EE D   + DW+ P L VR++
Subjt:  ---------------------------------------ETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGATATCTGAAAAATGGAGGAAGTTAAAATTGATAGATAAAGAAGAAACAAAGGTTGATCTTGATGAAATTAAATGTACTGTTTCTAAGGAGAATTTTAGATT
AAGTGTAGCTGCTAAGGTTCTCTCTAATCGCCCAGTCAATGTTGAAGCATTCCGAAATGTTATGAAGTCAGTTTGGAGGGTGCATCATGAAACCAAGATTGAATTTGCAG
AAACAGCAAAAATTTTAGGACAAAGAATTGGAGATATAGAAGAATTTGATTGGGATGGTACAGTTGATTGGATGGGTCCAGTGCTTAGAGTGCGGTTGGAGGCACCGTCT
GGGACGAATGGGACTCTGATGCAAAGGGGGGGCGTGGATGACCAAAGGATAGATTTGGAAATGATGAAAGGGGTAGTTCAGGTGGACGTAAGGGAAGAAGTGTCATTTCT
AAATTGGCGCTCTTTGGAAGTTCGTGGTAATTTTGAGAATTTTTCAAATTCAGAACTGAATGAAATTGGCTCTGATAGTCAAATTATTGTGCAACACGTTAAGGTTTTAG
ACACTGAGAAAGATATGGAAAGTAATGAAAAATCTATGGCTAGAAGAATCAATATGACAACCCCTTCTGAAGTTAAGAAAAGTCAAAATGAATCCATATCAGAGAAGAAT
TATGGCAAACAACTGTTGATATCAAACTCTTCTGAGTATTTTAAAGGAAAAGGTAAATTAGATGAAGATCTCAATGCCAATATTAAATCTTTCTCTTCTAGACATGAATC
CCATGAAGATATGGAAGAAGATAGACGAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAGATATCTGAAAAATGGAGGAAGTTAAAATTGATAGATAAAGAAGAAACAAAGGTTGATCTTGATGAAATTAAATGTACTGTTTCTAAGGAGAATTTTAGATT
AAGTGTAGCTGCTAAGGTTCTCTCTAATCGCCCAGTCAATGTTGAAGCATTCCGAAATGTTATGAAGTCAGTTTGGAGGGTGCATCATGAAACCAAGATTGAATTTGCAG
AAACAGCAAAAATTTTAGGACAAAGAATTGGAGATATAGAAGAATTTGATTGGGATGGTACAGTTGATTGGATGGGTCCAGTGCTTAGAGTGCGGTTGGAGGCACCGTCT
GGGACGAATGGGACTCTGATGCAAAGGGGGGGCGTGGATGACCAAAGGATAGATTTGGAAATGATGAAAGGGGTAGTTCAGGTGGACGTAAGGGAAGAAGTGTCATTTCT
AAATTGGCGCTCTTTGGAAGTTCGTGGTAATTTTGAGAATTTTTCAAATTCAGAACTGAATGAAATTGGCTCTGATAGTCAAATTATTGTGCAACACGTTAAGGTTTTAG
ACACTGAGAAAGATATGGAAAGTAATGAAAAATCTATGGCTAGAAGAATCAATATGACAACCCCTTCTGAAGTTAAGAAAAGTCAAAATGAATCCATATCAGAGAAGAAT
TATGGCAAACAACTGTTGATATCAAACTCTTCTGAGTATTTTAAAGGAAAAGGTAAATTAGATGAAGATCTCAATGCCAATATTAAATCTTTCTCTTCTAGACATGAATC
CCATGAAGATATGGAAGAAGATAGACGAATTTAG
Protein sequenceShow/hide protein sequence
MEEISEKWRKLKLIDKEETKVDLDEIKCTVSKENFRLSVAAKVLSNRPVNVEAFRNVMKSVWRVHHETKIEFAETAKILGQRIGDIEEFDWDGTVDWMGPVLRVRLEAPS
GTNGTLMQRGGVDDQRIDLEMMKGVVQVDVREEVSFLNWRSLEVRGNFENFSNSELNEIGSDSQIIVQHVKVLDTEKDMESNEKSMARRINMTTPSEVKKSQNESISEKN
YGKQLLISNSSEYFKGKGKLDEDLNANIKSFSSRHESHEDMEEDRRI