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Sed0021893 (gene) of Chayote v1 genome

Gene IDSed0021893
OrganismSechium edule (Chayote v1)
DescriptionProtein indeterminate-domain 16
Genome locationLG08:120461..121335
RNA-Seq ExpressionSed0021893
SyntenySed0021893
Gene Ontology termsGO:0009630 - gravitropism (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR039288 - Zinc finger protein SHOOT GRAVITROPISM 5-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057771.1 protein indeterminate-domain 16 [Cucumis melo var. makuwa]1.6e-4971.35Show/hide
Query:  MEDEGQKELQLLPTPHSIG------SSRASESSFRLRSGALEPGT-GSVDLQLSISVRPIRGV--GG----------------CVEAVKWEAAEQIRVAA
        MEDE QKELQLLPTPHSI       SSR S+SS R RS   E G+ GSVDLQLSIS+RPIR V  GG                CVEA+KW+AAEQIR+AA
Subjt:  MEDEGQKELQLLPTPHSIG------SSRASESSFRLRSGALEPGT-GSVDLQLSISVRPIRGV--GG----------------CVEAVKWEAAEQIRVAA

Query:  IEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS
        IEKAYAE+VRE+TKREIELAQTEFARARQMWERAR+E+E+AERMK+ ATR MDSTCMEITCQSCRQRFRPS
Subjt:  IEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS

KAG6589384.1 Zinc finger protein SHOOT GRAVITROPISM 5, partial [Cucurbita argyrosperma subsp. sororia]2.1e-4971.6Show/hide
Query:  MEDEGQKELQLLPTPHSI-GSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIR---------------GVGGCVEAVKWEAAEQIRVAAIEKAYAEKV
        MEDE QKELQLLPTPH+I  SSR S SS R RS   E G GS+DLQLSISVRPIR                   CVEA+KW+AAEQIR+AA+EKAYAE+V
Subjt:  MEDEGQKELQLLPTPHSI-GSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIR---------------GVGGCVEAVKWEAAEQIRVAAIEKAYAEKV

Query:  REVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS
        RE+TKREIELAQTEF RARQMWERAR+E+E+AERMK+ ATR MDSTCMEITCQSCRQRFRPS
Subjt:  REVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS

XP_022930039.1 protein indeterminate-domain 14-like [Cucurbita moschata]1.5e-5070.91Show/hide
Query:  MEDEGQKELQLLPTPHSI---GSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIR-----------------GVGGCVEAVKWEAAEQIRVAAIEKAY
        MEDE QKELQLLPTPHSI    SSR S+SS R RS  LEPG GSVDLQLSIS+RPIR                   G CVEA+KW+A EQIR+AA+EKAY
Subjt:  MEDEGQKELQLLPTPHSI---GSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIR-----------------GVGGCVEAVKWEAAEQIRVAAIEKAY

Query:  AEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRP
        AE+VRE+TKREIELAQTEFARARQMWERAR+E+E+AERM++ ATR +DSTCMEITCQSCRQRFRP
Subjt:  AEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRP

XP_023006854.1 protein indeterminate-domain 14-like [Cucurbita maxima]2.8e-4969.88Show/hide
Query:  MEDEGQKELQLLPTPHSI---GSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIRGVGG-----------------CVEAVKWEAAEQIRVAAIEKAY
        MEDE QKELQLLPTPHSI    SSR S+SS R RS  LEP  GSVDLQLSIS+RPIR   G                 CVEA+KW+A EQIR+AA+EKAY
Subjt:  MEDEGQKELQLLPTPHSI---GSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIRGVGG-----------------CVEAVKWEAAEQIRVAAIEKAY

Query:  AEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS
        AE+VRE+TKREIELAQTEFARARQMWERAR+E+E+AER ++ ATR +DSTCMEITCQSCRQRFRPS
Subjt:  AEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS

XP_038878928.1 protein indeterminate-domain 16 [Benincasa hispida]2.8e-4970.83Show/hide
Query:  MEDEGQKELQLLPTPHSIG------SSRASESSFRLRSGALE-PGTGSVDLQLSISVRPIR---------------GVGGCVEAVKWEAAEQIRVAAIEK
        MEDE QKELQLLPTPHSI       SSR S+SS R RS A E  G GSVDLQLSIS+RPIR                   CVEA+KW+AAEQIR+AA+EK
Subjt:  MEDEGQKELQLLPTPHSIG------SSRASESSFRLRSGALE-PGTGSVDLQLSISVRPIR---------------GVGGCVEAVKWEAAEQIRVAAIEK

Query:  AYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS
        AYAE+VRE+TKREIELAQTEFARARQMWERAR+E+E+AERMK+ ATR MDSTCMEITCQSCRQRFRPS
Subjt:  AYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS

TrEMBL top hitse value%identityAlignment
A0A1S3CN02 protein indeterminate-domain 161.7e-4970.76Show/hide
Query:  MEDEGQKELQLLPTPHSIG------SSRASESSFRLRSGALEPGT-GSVDLQLSISVRPIRGV--GG----------------CVEAVKWEAAEQIRVAA
        MEDE QKELQLLPTPHSI       SSR S+SS R RS   E G+ GSVDLQLSIS+RPIR V  GG                CVEA+KW+AAEQIR+AA
Subjt:  MEDEGQKELQLLPTPHSIG------SSRASESSFRLRSGALEPGT-GSVDLQLSISVRPIRGV--GG----------------CVEAVKWEAAEQIRVAA

Query:  IEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS
        +EKAYAE+VRE+TKREIELAQTEFARARQMWERAR+E+E+AERMK+ ATR MDSTCMEITCQSCRQRFRPS
Subjt:  IEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS

A0A5A7UWD1 Protein indeterminate-domain 167.8e-5071.35Show/hide
Query:  MEDEGQKELQLLPTPHSIG------SSRASESSFRLRSGALEPGT-GSVDLQLSISVRPIRGV--GG----------------CVEAVKWEAAEQIRVAA
        MEDE QKELQLLPTPHSI       SSR S+SS R RS   E G+ GSVDLQLSIS+RPIR V  GG                CVEA+KW+AAEQIR+AA
Subjt:  MEDEGQKELQLLPTPHSIG------SSRASESSFRLRSGALEPGT-GSVDLQLSISVRPIRGV--GG----------------CVEAVKWEAAEQIRVAA

Query:  IEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS
        IEKAYAE+VRE+TKREIELAQTEFARARQMWERAR+E+E+AERMK+ ATR MDSTCMEITCQSCRQRFRPS
Subjt:  IEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS

A0A5D3BFD1 Protein indeterminate-domain 161.7e-4970.76Show/hide
Query:  MEDEGQKELQLLPTPHSIG------SSRASESSFRLRSGALEPGT-GSVDLQLSISVRPIRGV--GG----------------CVEAVKWEAAEQIRVAA
        MEDE QKELQLLPTPHSI       SSR S+SS R RS   E G+ GSVDLQLSIS+RPIR V  GG                CVEA+KW+AAEQIR+AA
Subjt:  MEDEGQKELQLLPTPHSIG------SSRASESSFRLRSGALEPGT-GSVDLQLSISVRPIRGV--GG----------------CVEAVKWEAAEQIRVAA

Query:  IEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS
        +EKAYAE+VRE+TKREIELAQTEFARARQMWERAR+E+E+AERMK+ ATR MDSTCMEITCQSCRQRFRPS
Subjt:  IEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS

A0A6J1EQH1 protein indeterminate-domain 14-like7.1e-5170.91Show/hide
Query:  MEDEGQKELQLLPTPHSI---GSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIR-----------------GVGGCVEAVKWEAAEQIRVAAIEKAY
        MEDE QKELQLLPTPHSI    SSR S+SS R RS  LEPG GSVDLQLSIS+RPIR                   G CVEA+KW+A EQIR+AA+EKAY
Subjt:  MEDEGQKELQLLPTPHSI---GSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIR-----------------GVGGCVEAVKWEAAEQIRVAAIEKAY

Query:  AEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRP
        AE+VRE+TKREIELAQTEFARARQMWERAR+E+E+AERM++ ATR +DSTCMEITCQSCRQRFRP
Subjt:  AEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRP

A0A6J1L3B7 protein indeterminate-domain 14-like1.3e-4969.88Show/hide
Query:  MEDEGQKELQLLPTPHSI---GSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIRGVGG-----------------CVEAVKWEAAEQIRVAAIEKAY
        MEDE QKELQLLPTPHSI    SSR S+SS R RS  LEP  GSVDLQLSIS+RPIR   G                 CVEA+KW+A EQIR+AA+EKAY
Subjt:  MEDEGQKELQLLPTPHSI---GSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIRGVGG-----------------CVEAVKWEAAEQIRVAAIEKAY

Query:  AEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS
        AE+VRE+TKREIELAQTEFARARQMWERAR+E+E+AER ++ ATR +DSTCMEITCQSCRQRFRPS
Subjt:  AEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS

SwissProt top hitse value%identityAlignment
F4IPE3 Zinc finger protein SHOOT GRAVITROPISM 51.1e-0841.77Show/hide
Query:  AAEQI-RVAAIEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR
        A+EQI ++A  EKAYAE+ +   KR+ E+A+ EFA A+++ ++A+ E+ERA+ +K+ + + + ST M++TCQ+C+ +F+
Subjt:  AAEQI-RVAAIEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR

Q9C9X7 Protein indeterminate-domain 141.8e-0632.14Show/hide
Query:  GQKELQLLPTPHSIGSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIRGVGGCVEAVKWEAAEQIRVAAIEKAYAEKVREVTKREIELAQTEFARARQ
        G  ELQLLP+ +      A E+S  L  G ++  T S                  VE   +E  E     ++E+   E+ R  TKR+IE+A+ EFA A++
Subjt:  GQKELQLLPTPHSIGSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIRGVGGCVEAVKWEAAEQIRVAAIEKAYAEKVREVTKREIELAQTEFARARQ

Query:  MWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR
        + + AR E+ +A   ++ A+R + +T M+ITC +C+Q F+
Subjt:  MWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR

Q9FRH4 Protein indeterminate-domain 163.0e-0635.58Show/hide
Query:  SVDLQLSISVRPIRGVGGCVEAVKWEAAEQIRVAAIEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCR
        S++LQLSI +   R         K E +     A  E   AE+ R+  KR+IE+A+ +F +A+++ E A+ E+E+A  +++ A + +++T MEITC SC+
Subjt:  SVDLQLSISVRPIRGVGGCVEAVKWEAAEQIRVAAIEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCR

Query:  QRFR
        Q F+
Subjt:  QRFR

Arabidopsis top hitse value%identityAlignment
AT1G68130.1 indeterminate(ID)-domain 141.2e-0732.14Show/hide
Query:  GQKELQLLPTPHSIGSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIRGVGGCVEAVKWEAAEQIRVAAIEKAYAEKVREVTKREIELAQTEFARARQ
        G  ELQLLP+ +      A E+S  L  G ++  T S                  VE   +E  E     ++E+   E+ R  TKR+IE+A+ EFA A++
Subjt:  GQKELQLLPTPHSIGSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIRGVGGCVEAVKWEAAEQIRVAAIEKAYAEKVREVTKREIELAQTEFARARQ

Query:  MWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR
        + + AR E+ +A   ++ A+R + +T M+ITC +C+Q F+
Subjt:  MWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR

AT2G01940.1 C2H2-like zinc finger protein7.8e-1041.77Show/hide
Query:  AAEQI-RVAAIEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR
        A+EQI ++A  EKAYAE+ +   KR+ E+A+ EFA A+++ ++A+ E+ERA+ +K+ + + + ST M++TCQ+C+ +F+
Subjt:  AAEQI-RVAAIEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR

AT2G01940.2 C2H2-like zinc finger protein7.8e-1041.77Show/hide
Query:  AAEQI-RVAAIEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR
        A+EQI ++A  EKAYAE+ +   KR+ E+A+ EFA A+++ ++A+ E+ERA+ +K+ + + + ST M++TCQ+C+ +F+
Subjt:  AAEQI-RVAAIEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR

AT2G01940.3 C2H2-like zinc finger protein7.8e-1041.77Show/hide
Query:  AAEQI-RVAAIEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR
        A+EQI ++A  EKAYAE+ +   KR+ E+A+ EFA A+++ ++A+ E+ERA+ +K+ + + + ST M++TCQ+C+ +F+
Subjt:  AAEQI-RVAAIEKAYAEKVREVTKREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFR

AT3G48550.1 BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3)4.7e-3150.96Show/hide
Query:  EDEGQKELQLLPTPHSIGSS---------RASESSFRLRSGALEPGTGSVDLQLSISVRPIRGV----GGCVEAVKWEAAEQIRVAAIEKAYAEKVREVT
        + +  KELQLLP+P S  S               +   RS ++      +DL+LSIS+  I        G VEA+KW+AAEQIR+AAIEKAYAE+VRE+T
Subjt:  EDEGQKELQLLPTPHSIGSS---------RASESSFRLRSGALEPGTGSVDLQLSISVRPIRGV----GGCVEAVKWEAAEQIRVAAIEKAYAEKVREVT

Query:  KREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRP
        +RE+E+AQ+EFARAR MW++AR+E+ERAER+K+ +   +D+ C+EITC SCRQRFRP
Subjt:  KREIELAQTEFARARQMWERARQEMERAERMKQTATRHMDSTCMEITCQSCRQRFRP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATGAAGGTCAGAAGGAGTTGCAGCTGCTGCCGACGCCTCACTCGATAGGCTCGTCGCGTGCATCGGAGTCGTCGTTTCGATTGCGTTCGGGTGCGTTGGAACC
GGGGACGGGATCGGTGGACCTGCAGTTGTCGATAAGCGTGAGGCCAATCCGGGGGGTGGGCGGGTGCGTGGAGGCGGTGAAGTGGGAGGCGGCGGAGCAAATTCGGGTGG
CGGCGATCGAGAAGGCGTACGCGGAGAAAGTGAGAGAGGTTACGAAGAGGGAGATAGAATTGGCGCAAACGGAATTTGCTCGGGCGAGGCAGATGTGGGAAAGGGCCAGA
CAAGAAATGGAAAGGGCGGAACGAATGAAACAGACAGCCACTCGCCATATGGATTCTACGTGCATGGAGATCACTTGCCAATCTTGCAGGCAGAGGTTTCGCCCTTCTTA
A
mRNA sequenceShow/hide mRNA sequence
GTAAGATGGTAATTTCAAGCCCCAATTTGGGGTATATATAGGTGCAAGTTTGTTGCACTTTTTTTCAGAGAGTCTGTTTGAATTGTACTGAAAAGAAAGGAAAAAGGAAA
AACAATATCCCTTTTATCATTTGTGTGTTTCAGAAATGGAAGATGAAGGTCAGAAGGAGTTGCAGCTGCTGCCGACGCCTCACTCGATAGGCTCGTCGCGTGCATCGGAG
TCGTCGTTTCGATTGCGTTCGGGTGCGTTGGAACCGGGGACGGGATCGGTGGACCTGCAGTTGTCGATAAGCGTGAGGCCAATCCGGGGGGTGGGCGGGTGCGTGGAGGC
GGTGAAGTGGGAGGCGGCGGAGCAAATTCGGGTGGCGGCGATCGAGAAGGCGTACGCGGAGAAAGTGAGAGAGGTTACGAAGAGGGAGATAGAATTGGCGCAAACGGAAT
TTGCTCGGGCGAGGCAGATGTGGGAAAGGGCCAGACAAGAAATGGAAAGGGCGGAACGAATGAAACAGACAGCCACTCGCCATATGGATTCTACGTGCATGGAGATCACT
TGCCAATCTTGCAGGCAGAGGTTTCGCCCTTCTTAATTTTCAATTATACCCCCCTACCTACCTTTAATTACTTTCACTTTCACCCCCTTATTTTCTTCTATTTCTTCCCT
TACCCTACTCACACTTTCTTTTAACTCATCAACTCTGCCTGTGCGTGTTTCTTTTTTTTTTTAATTAATCTCTTCAATTAAGATAAATATATAGAGACACAAAATATGGG
TTATATTCTTATTAGTCTCATGATTTTTGTCCCTTGGGTTTTTTTTTAATAATAACCCCAATGATTTGTTTATGGCATTTTTTCGACCGGTAATAATGAAGATCG
Protein sequenceShow/hide protein sequence
MEDEGQKELQLLPTPHSIGSSRASESSFRLRSGALEPGTGSVDLQLSISVRPIRGVGGCVEAVKWEAAEQIRVAAIEKAYAEKVREVTKREIELAQTEFARARQMWERAR
QEMERAERMKQTATRHMDSTCMEITCQSCRQRFRPS