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Sed0021944 (gene) of Chayote v1 genome

Gene IDSed0021944
OrganismSechium edule (Chayote v1)
DescriptionVQ domain-containing protein
Genome locationLG08:30978729..30979043
RNA-Seq ExpressionSed0021944
SyntenySed0021944
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063579.1 VQ motif-containing protein [Cucumis melo var. makuwa]8.9e-1857.66Show/hide
Query:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD-DANFDQSPHEFSPA-------------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGE
        + KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD DANFDQS  +F+ A             SFD +D  G  S  V    R+  G    Y  +GE
Subjt:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD-DANFDQSPHEFSPA-------------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGE

Query:  MEGTFLGFHPS
        MEG+F GF  S
Subjt:  MEGTFLGFHPS

KAE8651551.1 hypothetical protein Csa_019210 [Cucumis sativus]1.1e-1254.63Show/hide
Query:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP--DDANFDQSPHEFSP--------ASFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEME-G
        + KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP  DD +     H F P         SFD KD  G  +S      R+  G    Y  +GEME G
Subjt:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP--DDANFDQSPHEFSP--------ASFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEME-G

Query:  TFLGFHPS
        +F GF  S
Subjt:  TFLGFHPS

KAG6586326.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.6e-1956.25Show/hide
Query:  MEKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDANFDQSPHEFSPA---------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEMEGT
        M  KPIKVKYISSPMMVKA+NE EFRAIVQKLTGQHS DDA FD+SP EF+ A         SFD+KD   L SS   DP+RV           GEM+ +
Subjt:  MEKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDANFDQSPHEFSPA---------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEMEGT

Query:  FLGFHPSYTHAW
          GF  SY   W
Subjt:  FLGFHPSYTHAW

XP_022938305.1 sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]6.1e-1956.25Show/hide
Query:  MEKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDANFDQSPHEFSPA---------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEMEGT
        M  KPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS DDA FD+SP EF+ A         SFD+KD   L SS   DP+ V           GEM+ +
Subjt:  MEKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDANFDQSPHEFSPA---------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEMEGT

Query:  FLGFHPSYTHAW
          GF  SY   W
Subjt:  FLGFHPSYTHAW

XP_038877668.1 sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]1.3e-1655.56Show/hide
Query:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDANFDQSPHEFSPA-----------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEMEG
        + KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP DA FDQS  +F+             SFD KD     S  V            ++D QGEMEG
Subjt:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDANFDQSPHEFSPA-----------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEMEG

Query:  TFLGFHPS
        +F GF  S
Subjt:  TFLGFHPS

TrEMBL top hitse value%identityAlignment
A0A0A0LFF9 VQ domain-containing protein5.4e-1354.63Show/hide
Query:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP--DDANFDQSPHEFSP--------ASFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEME-G
        + KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP  DD +     H F P         SFD KD  G  +S      R+  G    Y  +GEME G
Subjt:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP--DDANFDQSPHEFSP--------ASFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEME-G

Query:  TFLGFHPS
        +F GF  S
Subjt:  TFLGFHPS

A0A5A7VDH6 VQ motif-containing protein4.3e-1857.66Show/hide
Query:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD-DANFDQSPHEFSPA-------------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGE
        + KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD DANFDQS  +F+ A             SFD +D  G  S  V    R+  G    Y  +GE
Subjt:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD-DANFDQSPHEFSPA-------------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGE

Query:  MEGTFLGFHPS
        MEG+F GF  S
Subjt:  MEGTFLGFHPS

A0A6J1CME4 sigma factor binding protein 1, chloroplastic-like1.5e-1046.49Show/hide
Query:  KKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDA-------NFDQSPHEFSP------ASFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEME
        +KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPDDA         ++  H F P       S D K   GL S  V +       +GE    Q EM+
Subjt:  KKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDA-------NFDQSPHEFSP------ASFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEME

Query:  GTFLGFHPSYTHAW
        G F GF  S  + +
Subjt:  GTFLGFHPSYTHAW

A0A6J1FJE0 sigma factor binding protein 1, chloroplastic-like3.0e-1956.25Show/hide
Query:  MEKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDANFDQSPHEFSPA---------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEMEGT
        M  KPIKVKYISSPMMVKANNE EFRAIVQKLTGQHS DDA FD+SP EF+ A         SFD+KD   L SS   DP+ V           GEM+ +
Subjt:  MEKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDANFDQSPHEFSPA---------SFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEMEGT

Query:  FLGFHPSYTHAW
          GF  SY   W
Subjt:  FLGFHPSYTHAW

W9RT96 VQ domain-containing protein9.9e-0766Show/hide
Query:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP-----DDANFDQS
        +KKPIK+KYISSPMMV+ANN SEFRAIVQ+LTG++S      DD + D+S
Subjt:  EKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSP-----DDANFDQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAAGCCCATCAAAGTCAAGTACATTTCCAGCCCCATGATGGTCAAGGCCAACAACGAGTCCGAATTTCGAGCCATTGTTCAGAAGCTCACTGGCCAGCACTC
GCCCGACGATGCTAATTTTGATCAATCACCTCATGAATTTAGCCCGGCTTCTTTCGACGCCAAGGATCGGTGTGGTTTGTTCTCTAGTAGTGTTTGCGATCCGGTCAGGG
TCGGGGTTGGGGTTGGGGAAGTTTACGATTCGCAAGGTGAAATGGAAGGTACTTTTTTGGGGTTTCATCCTTCTTATACTCATGCATGGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAAGCCCATCAAAGTCAAGTACATTTCCAGCCCCATGATGGTCAAGGCCAACAACGAGTCCGAATTTCGAGCCATTGTTCAGAAGCTCACTGGCCAGCACTC
GCCCGACGATGCTAATTTTGATCAATCACCTCATGAATTTAGCCCGGCTTCTTTCGACGCCAAGGATCGGTGTGGTTTGTTCTCTAGTAGTGTTTGCGATCCGGTCAGGG
TCGGGGTTGGGGTTGGGGAAGTTTACGATTCGCAAGGTGAAATGGAAGGTACTTTTTTGGGGTTTCATCCTTCTTATACTCATGCATGGCCATGA
Protein sequenceShow/hide protein sequence
MEKKPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDDANFDQSPHEFSPASFDAKDRCGLFSSSVCDPVRVGVGVGEVYDSQGEMEGTFLGFHPSYTHAWP