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Sed0021963 (gene) of Chayote v1 genome

Gene IDSed0021963
OrganismSechium edule (Chayote v1)
Descriptiontetratricopeptide repeat protein 5-like
Genome locationLG07:36925704..36930781
RNA-Seq ExpressionSed0021963
SyntenySed0021963
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601256.1 Tetratricopeptide repeat protein 5, partial [Cucurbita argyrosperma subsp. sororia]1.8e-5348.89Show/hide
Query:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSI-----------------------------------------------
        M  E K +TFDKA+AA EELYHIRDT+FP+NPD+K SKLRELSDLA+ ILDSI                                               
Subjt:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSI-----------------------------------------------

Query:  ----------------------------------------------PTGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT
                                                        GTENEA LVEESIQHAKEAVTLDVKDGNSWY                     
Subjt:  ----------------------------------------------PTGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT

Query:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE
             NLGNACLTSFFVTG+WDHNKLLQSLKAYQNAEKDE MMSNPDLYFNCATVNKY ENYERALSGFE
Subjt:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE

XP_008446682.1 PREDICTED: tetratricopeptide repeat protein 5-like isoform X1 [Cucumis melo]8.8e-5348.89Show/hide
Query:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------
        M  EAK DTFDKA+AA EELY IRDT+FP+NPD+K SKLRELSDLAL ILDSIP                                              
Subjt:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------

Query:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT
                                                        GTENEA LVEESIQHAKEAVTLDVKDGNSWY                     
Subjt:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT

Query:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE
             NLGNACLTSFFVTG+WDH+KLLQSLKAYQNAEKDE M+SNPDLYFNCATVNKY ENY RALSGFE
Subjt:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE

XP_022980032.1 tetratricopeptide repeat protein 5-like [Cucurbita maxima]1.8e-5348.89Show/hide
Query:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSI-----------------------------------------------
        M  E K +TFDKA+AA EELYHIRDT+FP+NPD+K SKLRELSDLA+ ILDSI                                               
Subjt:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSI-----------------------------------------------

Query:  ----------------------------------------------PTGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT
                                                        GTENEA LVEESIQHAKEAVTLDVKDGNSWY                     
Subjt:  ----------------------------------------------PTGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT

Query:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE
             NLGNACLTSFFVTG+WDHNKLLQSLKAYQNAEKDE MMSNPDLYFNCATVNKY ENYERALSGFE
Subjt:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE

XP_023514705.1 tetratricopeptide repeat protein 5-like [Cucurbita pepo subsp. pepo]1.8e-5348.89Show/hide
Query:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSI-----------------------------------------------
        M  E K +TFDKA+AA EELYHIRDT+FP+NPD+K SKLRELSDLA+ ILDSI                                               
Subjt:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSI-----------------------------------------------

Query:  ----------------------------------------------PTGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT
                                                        GTENEA LVEESIQHAKEAVTLDVKDGNSWY                     
Subjt:  ----------------------------------------------PTGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT

Query:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE
             NLGNACLTSFFVTG+WDHNKLLQSLKAYQNAEKDE MMSNPDLYFNCATVNKY ENYERALSGFE
Subjt:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE

XP_038891369.1 tetratricopeptide repeat protein 5-like [Benincasa hispida]4.7e-5448.89Show/hide
Query:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------
        M  EAK DTFDKA+AA EELYHIRDT+FP+NPD+K SK RELSDLAL ILDSIP                                              
Subjt:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------

Query:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT
                                                        GTENEA LVEESIQHAKEAVTLDVKDGNSWY                     
Subjt:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT

Query:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE
             NLGNACLTSFFVTG+WDH+KLLQSLKAYQNAEKDE M+SNPDLYFNCATVNKY ENY+RALSGFE
Subjt:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE

TrEMBL top hitse value%identityAlignment
A0A1S3BF62 tetratricopeptide repeat protein 5-like isoform X24.3e-5348.89Show/hide
Query:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------
        M  EAK DTFDKA+AA EELY IRDT+FP+NPD+K SKLRELSDLAL ILDSIP                                              
Subjt:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------

Query:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT
                                                        GTENEA LVEESIQHAKEAVTLDVKDGNSWY                     
Subjt:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT

Query:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE
             NLGNACLTSFFVTG+WDH+KLLQSLKAYQNAEKDE M+SNPDLYFNCATVNKY ENY RALSGFE
Subjt:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE

A0A1S3BFP3 tetratricopeptide repeat protein 5-like isoform X34.3e-5348.89Show/hide
Query:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------
        M  EAK DTFDKA+AA EELY IRDT+FP+NPD+K SKLRELSDLAL ILDSIP                                              
Subjt:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------

Query:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT
                                                        GTENEA LVEESIQHAKEAVTLDVKDGNSWY                     
Subjt:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT

Query:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE
             NLGNACLTSFFVTG+WDH+KLLQSLKAYQNAEKDE M+SNPDLYFNCATVNKY ENY RALSGFE
Subjt:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE

A0A1S3BGG9 tetratricopeptide repeat protein 5-like isoform X14.3e-5348.89Show/hide
Query:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------
        M  EAK DTFDKA+AA EELY IRDT+FP+NPD+K SKLRELSDLAL ILDSIP                                              
Subjt:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------

Query:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT
                                                        GTENEA LVEESIQHAKEAVTLDVKDGNSWY                     
Subjt:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT

Query:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE
             NLGNACLTSFFVTG+WDH+KLLQSLKAYQNAEKDE M+SNPDLYFNCATVNKY ENY RALSGFE
Subjt:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE

A0A5D3CAY6 Tetratricopeptide repeat protein 5-like isoform X34.3e-5348.89Show/hide
Query:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------
        M  EAK DTFDKA+AA EELY IRDT+FP+NPD+K SKLRELSDLAL ILDSIP                                              
Subjt:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIP----------------------------------------------

Query:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT
                                                        GTENEA LVEESIQHAKEAVTLDVKDGNSWY                     
Subjt:  -----------------------------------------------TGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT

Query:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE
             NLGNACLTSFFVTG+WDH+KLLQSLKAYQNAEKDE M+SNPDLYFNCATVNKY ENY RALSGFE
Subjt:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE

A0A6J1IQB7 tetratricopeptide repeat protein 5-like8.6e-5448.89Show/hide
Query:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSI-----------------------------------------------
        M  E K +TFDKA+AA EELYHIRDT+FP+NPD+K SKLRELSDLA+ ILDSI                                               
Subjt:  MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSI-----------------------------------------------

Query:  ----------------------------------------------PTGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT
                                                        GTENEA LVEESIQHAKEAVTLDVKDGNSWY                     
Subjt:  ----------------------------------------------PTGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHT

Query:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE
             NLGNACLTSFFVTG+WDHNKLLQSLKAYQNAEKDE MMSNPDLYFNCATVNKY ENYERALSGFE
Subjt:  NRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFE

SwissProt top hitse value%identityAlignment
Q0P5H9 Tetratricopeptide repeat protein 51.3e-1140.35Show/hide
Query:  VEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHTNRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEK-DETMMSNPDLYFNCATV
        V +S++ AK AV +D+ DG SWY                           LGNA L+ +F TG  +     Q+L AY  AEK D T  SNPDL+ N AT+
Subjt:  VEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHTNRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEK-DETMMSNPDLYFNCATV

Query:  NKYPENYERALSGF
        +KY ENY  AL GF
Subjt:  NKYPENYERALSGF

Q5BK48 Tetratricopeptide repeat protein 51.9e-1036.92Show/hide
Query:  ILDSIPTGTENE-ANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHTNRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEK-D
        +L  + T + +E +  V +S++ AK AV +DV DG SWY                           LGNA L+ +F TG  +     Q+L AY  AEK D
Subjt:  ILDSIPTGTENE-ANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHTNRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEK-D

Query:  ETMMSNPDLYFNCATVNKYPENYERALSGF
            SNPDL+ N AT++KY E+Y  AL GF
Subjt:  ETMMSNPDLYFNCATVNKYPENYERALSGF

Q8N0Z6 Tetratricopeptide repeat protein 51.3e-1137.69Show/hide
Query:  ILDSIPTGTENE-ANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHTNRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEK-D
        +L  + T TE+E ++ V +S++ AK AV +DV DG SWY                           LGN+ L+ +F TG  +     Q+L AY  AEK D
Subjt:  ILDSIPTGTENE-ANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHTNRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEK-D

Query:  ETMMSNPDLYFNCATVNKYPENYERALSGF
            SNPDL+ N AT++KY E+Y  AL GF
Subjt:  ETMMSNPDLYFNCATVNKYPENYERALSGF

Q99LG4 Tetratricopeptide repeat protein 51.9e-1036.92Show/hide
Query:  ILDSIPTGTENE-ANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHTNRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEK-D
        +L  + T + +E +  V +S++ AK AV +DV DG SWY                           LGNA L+ +F TG  +     Q+L AY  AEK D
Subjt:  ILDSIPTGTENE-ANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHTNRLADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEK-D

Query:  ETMMSNPDLYFNCATVNKYPENYERALSGF
            SNPDL+ N AT++KY E+Y  AL GF
Subjt:  ETMMSNPDLYFNCATVNKYPENYERALSGF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGGCGAAGCCAAGTATGATACATTCGACAAAGCCTCAGCGGCGGCGGAAGAGCTTTATCACATCAGAGACACATATTTCCCTATAAATCCCGATGAAAAAGCTTC
TAAGTTACGAGAGCTATCGGATCTTGCTCTCAACATTCTCGATTCCATTCCTACAGGTACTGAGAATGAGGCAAACCTTGTAGAGGAAAGCATTCAACATGCAAAAGAAG
CAGTTACTTTGGATGTGAAGGATGGAAACTCTTGGTACGCTCGTACCAAATATATTCTTCCTTCCTATATTGCTCGCAACTTTCCGACACATAATCACACTAATCGTCTT
GCAGATAATCTAGGAAATGCATGTCTTACGAGTTTTTTTGTTACTGGATCGTGGGATCATAATAAGCTTCTGCAATCTCTGAAGGCATATCAAAACGCAGAAAAAGATGA
AACAATGATGTCTAATCCAGACTTGTATTTTAACTGCGCTACTGTTAATAAATATCCGGAGAACTATGAGAGGGCCCTAAGCGGGTTTGAGGGTCTTTGCTTTGAAGGAT
CCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGGCGAAGCCAAGTATGATACATTCGACAAAGCCTCAGCGGCGGCGGAAGAGCTTTATCACATCAGAGACACATATTTCCCTATAAATCCCGATGAAAAAGCTTC
TAAGTTACGAGAGCTATCGGATCTTGCTCTCAACATTCTCGATTCCATTCCTACAGGTACTGAGAATGAGGCAAACCTTGTAGAGGAAAGCATTCAACATGCAAAAGAAG
CAGTTACTTTGGATGTGAAGGATGGAAACTCTTGGTACGCTCGTACCAAATATATTCTTCCTTCCTATATTGCTCGCAACTTTCCGACACATAATCACACTAATCGTCTT
GCAGATAATCTAGGAAATGCATGTCTTACGAGTTTTTTTGTTACTGGATCGTGGGATCATAATAAGCTTCTGCAATCTCTGAAGGCATATCAAAACGCAGAAAAAGATGA
AACAATGATGTCTAATCCAGACTTGTATTTTAACTGCGCTACTGTTAATAAATATCCGGAGAACTATGAGAGGGCCCTAAGCGGGTTTGAGGGTCTTTGCTTTGAAGGAT
CCTAG
Protein sequenceShow/hide protein sequence
MSGEAKYDTFDKASAAAEELYHIRDTYFPINPDEKASKLRELSDLALNILDSIPTGTENEANLVEESIQHAKEAVTLDVKDGNSWYARTKYILPSYIARNFPTHNHTNRL
ADNLGNACLTSFFVTGSWDHNKLLQSLKAYQNAEKDETMMSNPDLYFNCATVNKYPENYERALSGFEGLCFEGS