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Sed0021972 (gene) of Chayote v1 genome

Gene IDSed0021972
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG03:2857626..2857928
RNA-Seq ExpressionSed0021972
SyntenySed0021972
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054906.1 hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa]2.6e-0641.18Show/hide
Query:  ILVFAVLVTFI-SSASPSAAA-TTYSFPPPSNIHRRILFGHPPRSLPMS---NEYLRKPIRRLKDDREDKCPEASRQEDRKPHRREEPWPNCPVPASPPP
        + +F  +V+F  SS S SA A  ++  P P  + R +LF +   SLP S    EY  KP++R+  +R+DKC EA R  ++     ++PWP CPV  SPPP
Subjt:  ILVFAVLVTFI-SSASPSAAA-TTYSFPPPSNIHRRILFGHPPRSLPMS---NEYLRKPIRRLKDDREDKCPEASRQEDRKPHRREEPWPNCPVPASPPP

Query:  PF
        PF
Subjt:  PF
KAE8646677.1 hypothetical protein Csa_023590, partial [Cucumis sativus]1.5e-0643.16Show/hide
Query:  SSASPSA------AATTYSFPPPSNIHRRILFGHPPRSLPMS---NEYLRKPIRRLKDDREDKCPEASRQEDRKPHRREEPWPNCPVPASPPPPF
        +S SPS+      AA +Y  P P  + R +LF +   SLP S    EY  K  RR+  +R+DKC EA R  ++     ++PWP CPVP SPPPPF
Subjt:  SSASPSA------AATTYSFPPPSNIHRRILFGHPPRSLPMS---NEYLRKPIRRLKDDREDKCPEASRQEDRKPHRREEPWPNCPVPASPPPPF
TrEMBL top hitse value%identityAlignment
A0A0A0KEF9 Uncharacterized protein2.5e-0740.38Show/hide
Query:  VFAVLVTFISSASPSA------AATTYSFPPPSNIHRRILFGHPPRSLPMS---NEYLRKPIRRLKDDREDKCPEASRQEDRKPHRREEPWPNCPVPASP
        +F  ++  ++S SPS+      AA +Y  P P  + R +LF +   SLP S    EY  K  RR+  +R+DKC EA R  ++     ++PWP CPVP SP
Subjt:  VFAVLVTFISSASPSA------AATTYSFPPPSNIHRRILFGHPPRSLPMS---NEYLRKPIRRLKDDREDKCPEASRQEDRKPHRREEPWPNCPVPASP

Query:  PPPF
        PPPF
Subjt:  PPPF
A0A5D3DGG9 Uncharacterized protein1.2e-0641.18Show/hide
Query:  ILVFAVLVTFI-SSASPSAAA-TTYSFPPPSNIHRRILFGHPPRSLPMS---NEYLRKPIRRLKDDREDKCPEASRQEDRKPHRREEPWPNCPVPASPPP
        + +F  +V+F  SS S SA A  ++  P P  + R +LF +   SLP S    EY  KP++R+  +R+DKC EA R  ++     ++PWP CPV  SPPP
Subjt:  ILVFAVLVTFI-SSASPSAAA-TTYSFPPPSNIHRRILFGHPPRSLPMS---NEYLRKPIRRLKDDREDKCPEASRQEDRKPHRREEPWPNCPVPASPPP

Query:  PF
        PF
Subjt:  PF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGGATCCTAGTTTTTGCCGTTCTTGTAACATTCATCTCTTCAGCCTCGCCGTCAGCGGCTGCAACAACTTACTCTTTCCCACCACCAAGTAATATTCACCGTCG
AATCCTATTCGGCCACCCTCCACGATCGCTGCCAATGTCGAACGAGTATCTCCGAAAACCGATACGCCGTCTAAAAGATGACCGTGAAGACAAGTGCCCGGAAGCATCTC
GACAAGAAGATAGAAAACCGCATCGACGTGAGGAACCTTGGCCCAACTGCCCCGTCCCTGCATCGCCGCCTCCTCCCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGGGATCCTAGTTTTTGCCGTTCTTGTAACATTCATCTCTTCAGCCTCGCCGTCAGCGGCTGCAACAACTTACTCTTTCCCACCACCAAGTAATATTCACCGTCG
AATCCTATTCGGCCACCCTCCACGATCGCTGCCAATGTCGAACGAGTATCTCCGAAAACCGATACGCCGTCTAAAAGATGACCGTGAAGACAAGTGCCCGGAAGCATCTC
GACAAGAAGATAGAAAACCGCATCGACGTGAGGAACCTTGGCCCAACTGCCCCGTCCCTGCATCGCCGCCTCCTCCCTTTTAA
Protein sequenceShow/hide protein sequence
MAGILVFAVLVTFISSASPSAAATTYSFPPPSNIHRRILFGHPPRSLPMSNEYLRKPIRRLKDDREDKCPEASRQEDRKPHRREEPWPNCPVPASPPPPF