; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0021988 (gene) of Chayote v1 genome

Gene IDSed0021988
OrganismSechium edule (Chayote v1)
DescriptionC2H2-type domain-containing protein
Genome locationLG04:34512454..34513278
RNA-Seq ExpressionSed0021988
SyntenySed0021988
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050710.1 hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa]3.6e-4961Show/hide
Query:  MAAFCRSTGQATAADLHHLRPLPISGGSGPLVACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSR
        MA F R     T ADLHHLRPLPI G   PLVACRICDAVFSSSQALINHIGAHV++EG    A + R Q+QQ+    RFP GP F    R+ A+F+P+R
Subjt:  MAAFCRSTGQATAADLHHLRPLPISGGSGPLVACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSR

Query:  FPAPNSLGFEPAESIWPNH-LPPFARSLF---VPPP-----PAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKV--GDEENDRRHLYFSKLDLTLKL
        F +PNS+GFE AES+W NH + PF RS+F   VPPP       GQYF N     E    GDCTKPYINQLEKCLPKV  G EE+D R LY SK+DLTLKL
Subjt:  FPAPNSLGFEPAESIWPNH-LPPFARSLF---VPPP-----PAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKV--GDEENDRRHLYFSKLDLTLKL

KAB8495643.1 hypothetical protein FH972_025385 [Carpinus fangiana]2.6e-0735.87Show/hide
Query:  VACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFP---------DGPHFPATPRSAAMFV-----PS-RFP---APNSLGFEPAE
        +ACR+CD VF S+QALINHI +H+AEE   AA+    R  Q R    R P           P+F   P +    V     PS R P      S    P  
Subjt:  VACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFP---------DGPHFPATPRSAAMFV-----PS-RFP---APNSLGFEPAE

Query:  SIWPNHLPPFARSLFVP----PPPAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKV--GDEENDRRHLYF--SKLDLTLKL
        ++ P   P    S   P      P GQ        A E   GDCTKPY++QLE  +  V    + ND     F  +KLDL LKL
Subjt:  SIWPNHLPPFARSLFVP----PPPAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKV--GDEENDRRHLYF--SKLDLTLKL

KAE8651808.1 hypothetical protein Csa_006798 [Cucumis sativus]1.4e-5061.19Show/hide
Query:  MAAFCRSTGQATAADLHHLRPLPISGGSGPLVACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRR--QNQQRNHMHRFPDGPHFPATPRSAAMFVP
        MA F R     T ADLHHLRPLPI G   PLVACRICDAVFSSSQALINHIGAHV++EG     A SRR  Q+QQR    RFP GP F   PR+ A+F+P
Subjt:  MAAFCRSTGQATAADLHHLRPLPISGGSGPLVACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRR--QNQQRNHMHRFPDGPHFPATPRSAAMFVP

Query:  SRFPAPNSLGFEPAESIWPNHLPPFARSLF--------VPPPPAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKVGD--EENDRRHLYFSKLDLTLK
        +R+ +PN +GFE AES+W N + PF RS+F         PP   GQYF N   A EE   GDCTKPYINQLEKCLPKVG+  EE+D R LY SK+DLTLK
Subjt:  SRFPAPNSLGFEPAESIWPNHLPPFARSLF--------VPPPPAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKVGD--EENDRRHLYFSKLDLTLK

Query:  L
        L
Subjt:  L

KAG6574909.1 hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sororia]3.4e-6070Show/hide
Query:  GQATAADLHHLRPLPISGGSGPLVACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSRFPA-PNSL
        G+ATAADLHHLRPLPI G   PLVACRICDAVFSSSQALINHIGAHV++E GA++AAASRRQ+QQR+  HR P GP     PR+ AMF+PSR+   PNSL
Subjt:  GQATAADLHHLRPLPISGGSGPLVACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSRFPA-PNSL

Query:  GFEPAESIWPNHLPPFARSLFVP-----PPPAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKV---GDEENDRRHLYFSKLDLTLKL
        GF+ AES+WPN L PFARSLF       PPP GQY  NW+AA  E A GDCTKPYINQLEKCLPKV   G EE+D R LYFSKLDL+L+L
Subjt:  GFEPAESIWPNHLPPFARSLFVP-----PPPAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKV---GDEENDRRHLYFSKLDLTLKL

ONI26710.1 hypothetical protein PRUPE_1G040800 [Prunus persica]2.6e-0731.5Show/hide
Query:  DLHHLRPLPISGGSGPL-VACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSRFPAPNSLGFEPAE
        ++H     P S  SG   +ACRICD VF S+QALINHI +H+ ++G    A+  R+  QQ N        P FP          P      N +GF P  
Subjt:  DLHHLRPLPISGGSGPL-VACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSRFPAPNSLGFEPAE

Query:  SIWPNHLPPFARSLFVP------------PPPAGQYFPNWSAAAEEAA---------AGDCTKPYINQLEKCLPKVGDEENDRRHL---YFSKLDLTLKL
           P+H  P+ +    P                G ++    +A + AA         + DCT P ++QLE+ LP V  E + R ++       LDLTLKL
Subjt:  SIWPNHLPPFARSLFVP------------PPPAGQYFPNWSAAAEEAA---------AGDCTKPYINQLEKCLPKVGDEENDRRHL---YFSKLDLTLKL

TrEMBL top hitse value%identityAlignment
A0A0A0LNN3 C2H2-type domain-containing protein2.4e-4360.67Show/hide
Query:  MAAFCRSTGQATAADLHHLRPLPISGGSGPLVACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRR--QNQQRNHMHRFPDGPHFPATPRSAAMFVP
        MA F R     T ADLHHLRPLPI G   PLVACRICDAVFSSSQALINHIGAHV++EG     A SRR  Q+QQR    RFP GP F   PR+ A+F+P
Subjt:  MAAFCRSTGQATAADLHHLRPLPISGGSGPLVACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRR--QNQQRNHMHRFPDGPHFPATPRSAAMFVP

Query:  SRFPAPNSLGFEPAESIWPNHLPPFARSLF--------VPPPPAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKV
        +R+ +PN +GFE AES+W N + PF RS+F         PP   GQYF N   A EE   GDCTKPYINQLEKCLPKV
Subjt:  SRFPAPNSLGFEPAESIWPNHLPPFARSLF--------VPPPPAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKV

A0A2N9E7H8 C2H2-type domain-containing protein5.1e-0932.78Show/hide
Query:  VACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQ----QRNHMHRFPDGPHF--PATPRSAAMFVPSRFPAPNSLGFEPAESIW---------
        +ACR+CD VF S+QALINHI +H+ EE   A +    R N+     +  +   P  P+F  P  PR       +R P    L        +         
Subjt:  VACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQ----QRNHMHRFPDGPHF--PATPRSAAMFVPSRFPAPNSLGFEPAESIW---------

Query:  ---PNHLPPFARSLFVPPPPAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPK---VGDEENDRRHLY-FSKLDLTLKL
           P  + P AR+ F  PP              E  +GDCTKPY+NQL+  + K   V D  +D   +   +KLDL LKL
Subjt:  ---PNHLPPFARSLFVPPPPAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPK---VGDEENDRRHLY-FSKLDLTLKL

A0A314ZFQ4 C2H2-type domain-containing protein1.6e-0733.15Show/hide
Query:  VACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSRFPAPNSLGFEPAESIWPNH---------LPP
        +ACR+CD VF S+QALINHI +H+ ++G    A+  R+  QQ N        P FP          P      N +GF P     P+H         L P
Subjt:  VACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSRFPAPNSLGFEPAESIWPNH---------LPP

Query:  FA--RSLFVPPPPAGQYFPNWSAAAEEAA---------AGDCTKPYINQLEKCLPKVGDEENDRRHL---YFSKLDLTLKL
        +A  R++ V     G ++    +A + AA         + DCT P ++QLE+ LP V  E + R ++       LDLTLKL
Subjt:  FA--RSLFVPPPPAGQYFPNWSAAAEEAA---------AGDCTKPYINQLEKCLPKVGDEENDRRHL---YFSKLDLTLKL

A0A5A7U6B7 C2H2-type domain-containing protein1.7e-4961Show/hide
Query:  MAAFCRSTGQATAADLHHLRPLPISGGSGPLVACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSR
        MA F R     T ADLHHLRPLPI G   PLVACRICDAVFSSSQALINHIGAHV++EG    A + R Q+QQ+    RFP GP F    R+ A+F+P+R
Subjt:  MAAFCRSTGQATAADLHHLRPLPISGGSGPLVACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSR

Query:  FPAPNSLGFEPAESIWPNH-LPPFARSLF---VPPP-----PAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKV--GDEENDRRHLYFSKLDLTLKL
        F +PNS+GFE AES+W NH + PF RS+F   VPPP       GQYF N     E    GDCTKPYINQLEKCLPKV  G EE+D R LY SK+DLTLKL
Subjt:  FPAPNSLGFEPAESIWPNH-LPPFARSLF---VPPP-----PAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKV--GDEENDRRHLYFSKLDLTLKL

M5XVD2 C2H2-type domain-containing protein1.2e-0731.5Show/hide
Query:  DLHHLRPLPISGGSGPL-VACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSRFPAPNSLGFEPAE
        ++H     P S  SG   +ACRICD VF S+QALINHI +H+ ++G    A+  R+  QQ N        P FP          P      N +GF P  
Subjt:  DLHHLRPLPISGGSGPL-VACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSRFPAPNSLGFEPAE

Query:  SIWPNHLPPFARSLFVP------------PPPAGQYFPNWSAAAEEAA---------AGDCTKPYINQLEKCLPKVGDEENDRRHL---YFSKLDLTLKL
           P+H  P+ +    P                G ++    +A + AA         + DCT P ++QLE+ LP V  E + R ++       LDLTLKL
Subjt:  SIWPNHLPPFARSLFVP------------PPPAGQYFPNWSAAAEEAA---------AGDCTKPYINQLEKCLPKVGDEENDRRHL---YFSKLDLTLKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCATTTTGCCGCAGCACCGGCCAAGCAACCGCCGCCGATCTCCACCACCTACGCCCGCTTCCGATTTCCGGTGGAAGCGGCCCGCTCGTCGCCTGCCGAATCTG
CGACGCCGTGTTCTCCAGTAGCCAAGCCCTAATCAACCACATCGGAGCTCACGTCGCCGAAGAAGGCGGCGCAGCCGCCGCCGCAGCTTCCAGAAGACAGAATCAACAAC
GAAACCATATGCATCGGTTTCCGGATGGTCCGCATTTCCCGGCGACGCCGAGATCGGCGGCGATGTTTGTGCCGAGCAGATTTCCGGCGCCTAATTCGCTAGGGTTTGAG
CCGGCGGAATCGATCTGGCCAAATCATCTCCCTCCATTCGCTAGAAGTTTGTTCGTGCCGCCGCCGCCCGCCGGGCAGTACTTTCCGAATTGGAGCGCGGCGGCGGAGGA
GGCGGCGGCCGGCGACTGTACGAAGCCTTATATTAATCAATTGGAGAAATGTTTACCGAAAGTGGGCGATGAAGAAAACGACCGTCGGCATCTCTATTTTTCCAAACTGG
ATTTGACTCTGAAGCTGTGA
mRNA sequenceShow/hide mRNA sequence
CCCTCTTTCATTCAACCCTTTAAACCCAAAAAAGGTAACAGGCTTTTCTTCGCCTATAAATACTCTCAATTTCTCAAAAGCCTTCAATGCAAAGTTACACATCTCTGTTT
CTTCAGGTCCACAATCTCCGCCCATTTTTCCGGCCAAACCTCTCTCTCCGCCACCGTCATGGCCGCATTTTGCCGCAGCACCGGCCAAGCAACCGCCGCCGATCTCCACC
ACCTACGCCCGCTTCCGATTTCCGGTGGAAGCGGCCCGCTCGTCGCCTGCCGAATCTGCGACGCCGTGTTCTCCAGTAGCCAAGCCCTAATCAACCACATCGGAGCTCAC
GTCGCCGAAGAAGGCGGCGCAGCCGCCGCCGCAGCTTCCAGAAGACAGAATCAACAACGAAACCATATGCATCGGTTTCCGGATGGTCCGCATTTCCCGGCGACGCCGAG
ATCGGCGGCGATGTTTGTGCCGAGCAGATTTCCGGCGCCTAATTCGCTAGGGTTTGAGCCGGCGGAATCGATCTGGCCAAATCATCTCCCTCCATTCGCTAGAAGTTTGT
TCGTGCCGCCGCCGCCCGCCGGGCAGTACTTTCCGAATTGGAGCGCGGCGGCGGAGGAGGCGGCGGCCGGCGACTGTACGAAGCCTTATATTAATCAATTGGAGAAATGT
TTACCGAAAGTGGGCGATGAAGAAAACGACCGTCGGCATCTCTATTTTTCCAAACTGGATTTGACTCTGAAGCTGTGAAATCAGAAATGGAATCAACAAATGTAGGCAGA
AAAAAGACTAATTGCTTTTTTCTTTTGAATTTTATCATCGAATATATTATTTTAA
Protein sequenceShow/hide protein sequence
MAAFCRSTGQATAADLHHLRPLPISGGSGPLVACRICDAVFSSSQALINHIGAHVAEEGGAAAAAASRRQNQQRNHMHRFPDGPHFPATPRSAAMFVPSRFPAPNSLGFE
PAESIWPNHLPPFARSLFVPPPPAGQYFPNWSAAAEEAAAGDCTKPYINQLEKCLPKVGDEENDRRHLYFSKLDLTLKL