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Sed0022007 (gene) of Chayote v1 genome

Gene IDSed0022007
OrganismSechium edule (Chayote v1)
DescriptionUbiquitin family protein
Genome locationLG07:33743633..33743881
RNA-Seq ExpressionSed0022007
SyntenySed0022007
Gene Ontology termsGO:0005622 - intracellular (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR019956 - Ubiquitin domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBF0171280.1 ubiquitin family protein [Nitrospinae bacterium]5.0e-1658.97Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I LDV ASD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

XP_001012381.1 polyubiquitin [Tetrahymena thermophila SB210]6.6e-1658.97Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I LDV ASD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

XP_001322736.1 polyubiquitin [Trichomonas vaginalis G3]6.6e-1656.41Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I L+V ++D++ +VKAK+Q+K GI  D+ RL+F GK+L  DG+TLQDY +  D  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

XP_012653171.1 polyubiquitin [Tetrahymena thermophila SB210]6.6e-1658.97Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I LDV ASD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

XP_033323053.1 polyubiquitin-C [Megalopta genalis]1.7e-1659.74Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGG
        MQIFVKTL G+ I L+V ASD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DYK+  +C LHLV R+ GG
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGG

TrEMBL top hitse value%identityAlignment
A0A1J4KLU0 Polyubiquitin5.4e-1656.41Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I L+V  +D++ +VKAK+Q+K GI  D+ RL+F GK+L  DG+TLQDY +  D  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

A2E9V1 Polyubiquitin, putative3.2e-1656.41Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I L+V ++D++ +VKAK+Q+K GI  D+ RL+F GK+L  DG+TLQDY +  D  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

P90616 Polyubiquitin3.2e-1658.97Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I LDV ASD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

Q235G7 Polyubiquitin3.2e-1658.97Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I LDV ASD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

W7XCK1 Polyubiquitin3.2e-1658.97Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I LDV ASD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

SwissProt top hitse value%identityAlignment
P0CG68 Polyubiquitin-C9.5e-1856.41Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I L+V  SD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

P0CG82 Polyubiquitin4.3e-1858.44Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGG
        MQIFVKTL G+ I LDV ASD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GG
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGG

P0DJ25 Ubiquitin-60S ribosomal protein L404.3e-1858.44Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGG
        MQIFVKTL G+ I LDV ASD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GG
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGG

P33190 Ubiquitin-60S ribosomal protein L404.3e-1858.44Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGG
        MQIFVKTL G+ I LDV ASD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GG
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGG

P59669 Polyubiquitin2.5e-1857.69Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I L+V ASD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

Arabidopsis top hitse value%identityAlignment
AT4G02890.1 Ubiquitin family protein6.7e-1956.41Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I L+V +SD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

AT4G05050.1 ubiquitin 116.7e-1956.41Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I L+V +SD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

AT4G05320.2 polyubiquitin 106.7e-1956.41Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I L+V +SD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

AT4G05320.3 polyubiquitin 106.7e-1956.41Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I L+V +SD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF

AT4G05320.4 polyubiquitin 106.7e-1956.41Show/hide
Query:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF
        MQIFVKTL G+ I L+V +SD + NVKAK+Q+K GI  D+ RL+F GK+L  DG TL DY +  +  LHLV R+ GGF
Subjt:  MQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACTGCAGATGCAGATCTTCGTGAAAACACTGAATGGAAGGAGAATTGGTTTAGATGTTTCAGCTTCTGATAAAGTTATGAATGTAAAGGCTAAACTTCAAGAGAA
GATAGGCATTGGTTCGGACAGAATGAGGCTAGTTTTTGGAGGGAAAGAACTTGCCAATGATGGTTCCACTCTCCAAGACTATAAAGTTAACAATGATTGTGCTTTGCATT
TGGTTTTTCGTATCCCTGGTGGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTACTGCAGATGCAGATCTTCGTGAAAACACTGAATGGAAGGAGAATTGGTTTAGATGTTTCAGCTTCTGATAAAGTTATGAATGTAAAGGCTAAACTTCAAGAGAA
GATAGGCATTGGTTCGGACAGAATGAGGCTAGTTTTTGGAGGGAAAGAACTTGCCAATGATGGTTCCACTCTCCAAGACTATAAAGTTAACAATGATTGTGCTTTGCATT
TGGTTTTTCGTATCCCTGGTGGCTTTTAA
Protein sequenceShow/hide protein sequence
MLLQMQIFVKTLNGRRIGLDVSASDKVMNVKAKLQEKIGIGSDRMRLVFGGKELANDGSTLQDYKVNNDCALHLVFRIPGGF