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Sed0022043 (gene) of Chayote v1 genome

Gene IDSed0022043
OrganismSechium edule (Chayote v1)
DescriptionRING-H2 finger protein ATL46-like
Genome locationLG05:4771702..4772332
RNA-Seq ExpressionSed0022043
SyntenySed0022043
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR011016 - Zinc finger, RING-CH-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022159502.1 RING-H2 finger protein ATL2-like [Momordica charantia]5.3e-1561.19Show/hide
Query:  RFAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSA
        +F    +E+  +     C ICL +ME+SEKMREL NC HVFH ECLDTWIDEFQITCP+CRS L  A
Subjt:  RFAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSA

XP_022996076.1 RING-H2 finger protein ATL46-like [Cucurbita maxima]1.5e-1744.78Show/hide
Query:  LTKPPPIKASGRPFPPPQAAAVAGAPNQPRHPHRIPLP-----------LARHRSGHRFAGQGQEQPS---DRGVRGCAICLCEMERSEKMRELCNCRHV
        L KP P   +  PF  P +  +     + R+P  + +P           L     G     QG+  P    D   R C ICLCEMERSE MRELCNC HV
Subjt:  LTKPPPIKASGRPFPPPQAAAVAGAPNQPRHPHRIPLP-----------LARHRSGHRFAGQGQEQPS---DRGVRGCAICLCEMERSEKMRELCNCRHV

Query:  FHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFP
        FH +CLDTWIDEF+ITCP+CRS LF A     FP
Subjt:  FHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFP

XP_023520502.1 RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]3.3e-1748Show/hide
Query:  LTKPPPIKASGRPFPPPQA------------AAVAGAPNQPRHPHRIPLPL---ARHRSGHRFAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRH
        L KP P   +  PF PP +              V  A  Q R  + +P+        + G  F G   E+ +    R C ICL EMERSE MRELCNCRH
Subjt:  LTKPPPIKASGRPFPPPQA------------AAVAGAPNQPRHPHRIPLPL---ARHRSGHRFAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRH

Query:  VFHLECLDTWIDEFQITCPLCRSFL
        VFH ECLDTWIDEFQITCP+CRSFL
Subjt:  VFHLECLDTWIDEFQITCPLCRSFL

XP_023533023.1 RING-H2 finger protein ATL2-like [Cucurbita pepo subsp. pepo]3.4e-1445.08Show/hide
Query:  LTKPPPIKASGRPFPPPQAAAVAGAPNQPRHPHRIPLPL----ARHRS-------GHRFAGQGQEQPS---DRGVRGCAICLCEMERSEKMRELCNCRHV
        L KP P   +  PF  P +  +     + R+P  + +P     AR ++       G     QG+  P    D   R C ICLCEMERSE MREL NC HV
Subjt:  LTKPPPIKASGRPFPPPQAAAVAGAPNQPRHPHRIPLPL----ARHRS-------GHRFAGQGQEQPS---DRGVRGCAICLCEMERSEKMRELCNCRHV

Query:  FHLECLDTWIDEFQITCPLCRS
        FH +CLDTWIDEF+ITCP+CRS
Subjt:  FHLECLDTWIDEFQITCPLCRS

XP_038907243.1 RING-H2 finger protein ATL2-like [Benincasa hispida]3.1e-1568.33Show/hide
Query:  EQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSA
        E   D   R C +CLCEMERSE MREL NC HVFH EC D WIDEFQITCP+CRS L  A
Subjt:  EQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSA

TrEMBL top hitse value%identityAlignment
A0A1R3K6P6 Zinc finger, RING-type8.2e-1470Show/hide
Query:  RGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLF
        R C +CL  ME ++KMRELCNC HVFH ECLDTW+DE Q+TCPLCRS L+
Subjt:  RGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLF

A0A4D9AFF2 RING-type domain-containing protein7.0e-1366.67Show/hide
Query:  GVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFL
        G +GC+ICL  +E  +++RELCNCRH+FH +CLDTWIDE Q+TCPLCRS L
Subjt:  GVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFL

A0A540LHF1 RING-type domain-containing protein4.1e-1337.69Show/hide
Query:  PIKASGRPFPPPQAAAVAGAPNQPRHPHRIPLP--------------LARHRSGHRFAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLEC
        P++    P PPPQAA  +  P+    P  +PLP              L    +  +   Q + +  D  V  C +C+  ME  + +RE CNC H FH EC
Subjt:  PIKASGRPFPPPQAAAVAGAPNQPRHPHRIPLP--------------LARHRSGHRFAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLEC

Query:  LDTWIDEFQITCPLCRSFLFSAPRDCSFPP
        LD WID+ Q+TCPLCRS L   P+ CS  P
Subjt:  LDTWIDEFQITCPLCRSFLFSAPRDCSFPP

A0A6J1E009 RING-H2 finger protein ATL2-like2.6e-1561.19Show/hide
Query:  RFAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSA
        +F    +E+  +     C ICL +ME+SEKMREL NC HVFH ECLDTWIDEFQITCP+CRS L  A
Subjt:  RFAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSA

A0A6J1K3P6 RING-H2 finger protein ATL46-like7.2e-1844.78Show/hide
Query:  LTKPPPIKASGRPFPPPQAAAVAGAPNQPRHPHRIPLP-----------LARHRSGHRFAGQGQEQPS---DRGVRGCAICLCEMERSEKMRELCNCRHV
        L KP P   +  PF  P +  +     + R+P  + +P           L     G     QG+  P    D   R C ICLCEMERSE MRELCNC HV
Subjt:  LTKPPPIKASGRPFPPPQAAAVAGAPNQPRHPHRIPLP-----------LARHRSGHRFAGQGQEQPS---DRGVRGCAICLCEMERSEKMRELCNCRHV

Query:  FHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFP
        FH +CLDTWIDEF+ITCP+CRS LF A     FP
Subjt:  FHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFP

SwissProt top hitse value%identityAlignment
Q8GW38 RING-H2 finger protein ATL472.2e-1143.42Show/hide
Query:  QGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFPPPVFYF
        +G ++P D     CA+CLCE    +K+R L NC H FH++C+DTW+     TCPLCR  LFS      +P   F F
Subjt:  QGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFPPPVFYF

Q940Q4 RING-H2 finger protein ATL134.1e-1055.1Show/hide
Query:  CAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFS
        CA+CLCE E  +K+R L  C H FH++C+DTW+     TCPLCRS L S
Subjt:  CAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFS

Q9FL07 RING-H2 finger protein ATL461.2e-0940Show/hide
Query:  LPLARHRSGHRFAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFPPPVFYF
        LP+  ++     AG G    + +    CA+CLCE    +K+R L  C H FHL C+DTW+ +   TCPLCR  LFS     S   P+F F
Subjt:  LPLARHRSGHRFAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFPPPVFYF

Q9LSW9 RING-H2 finger protein ATL166.3e-1140.54Show/hide
Query:  FAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFPP
        F G+G+E+   R  + C++CL E +  EK+R + NC H+FH++C+D W+      CPLCR+       D SFPP
Subjt:  FAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFPP

Q9ZV53 Putative RING-H2 finger protein ATL491.2e-0955.1Show/hide
Query:  CAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFS
        C +CLCE E  +K+R L  C H FH+EC+DTW+     TCPLCRS L S
Subjt:  CAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFS

Arabidopsis top hitse value%identityAlignment
AT1G23980.1 RING/U-box superfamily protein1.5e-1243.42Show/hide
Query:  QGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFPPPVFYF
        +G ++P D     CA+CLCE    +K+R L NC H FH++C+DTW+     TCPLCR  LFS      +P   F F
Subjt:  QGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFPPPVFYF

AT1G24580.1 RING/U-box superfamily protein3.8e-1144.83Show/hide
Query:  QEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFL
        +E+  ++GV  C +CLC  +  E++ EL +C+H FH  CLD W      TCPLCRS L
Subjt:  QEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFL

AT2G18650.1 RING/U-box superfamily protein8.4e-1155.1Show/hide
Query:  CAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFS
        C +CLCE E  +K+R L  C H FH+EC+DTW+     TCPLCRS L S
Subjt:  CAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFS

AT4G30400.1 RING/U-box superfamily protein2.9e-1155.1Show/hide
Query:  CAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFS
        CA+CLCE E  +K+R L  C H FH++C+DTW+     TCPLCRS L S
Subjt:  CAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFS

AT5G43420.1 RING/U-box superfamily protein4.5e-1240.54Show/hide
Query:  FAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFPP
        F G+G+E+   R  + C++CL E +  EK+R + NC H+FH++C+D W+      CPLCR+       D SFPP
Subjt:  FAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSFLFSAPRDCSFPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCACAAAGCCTCCTCCGATTAAAGCTTCTGGCCGTCCATTTCCGCCTCCTCAAGCCGCCGCCGTCGCCGGAGCACCCAACCAGCCACGTCATCCTCACCGCATCCC
CCTTCCCCTCGCTCGTCACCGTTCCGGCCACCGATTTGCAGGCCAGGGTCAAGAGCAGCCTTCCGATCGTGGAGTTCGGGGATGTGCGATCTGTTTGTGCGAGATGGAGC
GATCGGAGAAGATGAGGGAGCTCTGTAACTGCCGCCATGTCTTCCATTTGGAGTGTTTGGATACGTGGATTGACGAGTTTCAGATTACTTGCCCTCTTTGTAGATCCTTC
CTTTTTTCCGCTCCCCGTGACTGTTCCTTCCCTCCGCCTGTATTCTATTTCTGTCCTGATTTATTTTATTATTTTATTGGCAGTACAGTATTTTTATTTTATTTTATTTT
GTTTTTTTACTGGGCACCATGTCAAAAGAAATATTACTTTATGTATCAAACTAAAACATTTGACCCTTATCTTTCTTACACTTAA
mRNA sequenceShow/hide mRNA sequence
GTTTCCCGTTTAAAGCCCACATTTGGCGACTCAAAGGGAAGGAAGAGCAGAGGGGGCATTTTGGGAATTATGGGGTTTCTCTATTTCGCCATTAACGCCCAAAGATGCTC
ACAAAGCCTCCTCCGATTAAAGCTTCTGGCCGTCCATTTCCGCCTCCTCAAGCCGCCGCCGTCGCCGGAGCACCCAACCAGCCACGTCATCCTCACCGCATCCCCCTTCC
CCTCGCTCGTCACCGTTCCGGCCACCGATTTGCAGGCCAGGGTCAAGAGCAGCCTTCCGATCGTGGAGTTCGGGGATGTGCGATCTGTTTGTGCGAGATGGAGCGATCGG
AGAAGATGAGGGAGCTCTGTAACTGCCGCCATGTCTTCCATTTGGAGTGTTTGGATACGTGGATTGACGAGTTTCAGATTACTTGCCCTCTTTGTAGATCCTTCCTTTTT
TCCGCTCCCCGTGACTGTTCCTTCCCTCCGCCTGTATTCTATTTCTGTCCTGATTTATTTTATTATTTTATTGGCAGTACAGTATTTTTATTTTATTTTATTTTGTTTTT
TTACTGGGCACCATGTCAAAAGAAATATTACTTTATGTATCAAACTAAAACATTTGACCCTTATCTTTCTTACACTTAATC
Protein sequenceShow/hide protein sequence
MLTKPPPIKASGRPFPPPQAAAVAGAPNQPRHPHRIPLPLARHRSGHRFAGQGQEQPSDRGVRGCAICLCEMERSEKMRELCNCRHVFHLECLDTWIDEFQITCPLCRSF
LFSAPRDCSFPPPVFYFCPDLFYYFIGSTVFLFYFILFFYWAPCQKKYYFMYQTKTFDPYLSYT