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Sed0022101 (gene) of Chayote v1 genome

Gene IDSed0022101
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S20
Genome locationLG13:1361384..1363498
RNA-Seq ExpressionSed0022101
SyntenySed0022101
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001848 - Ribosomal protein S10
IPR005729 - Ribosomal protein S10, eukaryotic/archaeal
IPR018268 - Ribosomal protein S10, conserved site
IPR027486 - Ribosomal protein S10 domain
IPR036838 - Ribosomal protein S10 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576788.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. sororia]7.9e-5897.54Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY AMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

KAG6600158.1 Glutathione S-transferase U17, partial [Cucurbita argyrosperma subsp. sororia]9.3e-5998.36Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

XP_008439109.1 PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo]9.3e-5998.36Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

XP_022922646.1 40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata]7.9e-5897.54Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY AMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

XP_022985516.1 40S ribosomal protein S20-2-like [Cucurbita maxima]7.9e-5897.54Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY AMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

TrEMBL top hitse value%identityAlignment
A0A1S3AXJ9 40S ribosomal protein S20-2-like4.5e-5998.36Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

A0A5A7VKH9 40S ribosomal protein S20-2-like4.5e-5998.36Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

A0A6J1FSX5 40S ribosomal protein S20-2-like4.5e-5998.36Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

A0A6J1IAH1 40S ribosomal protein S20-2-like4.5e-5998.36Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

A0A6J1J8F7 40S ribosomal protein S20-2-like3.8e-5897.54Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY AMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNT+DRFELRVHKRVIDLFSSADV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIADQ
        VKQITSITIEPGVEVEVTIADQ
Subjt:  VKQITSITIEPGVEVEVTIADQ

SwissProt top hitse value%identityAlignment
P23403 40S ribosomal protein S201.2e-4073.83Show/hide
Query:  DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
        D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ T+DRF++R+HKR+IDL S +++VKQITSI+IEPGVE
Subjt:  DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE

Query:  VEVTIAD
        VEVTIAD
Subjt:  VEVTIAD

P35686 40S ribosomal protein S206.9e-4984.62Show/hide
Query:  MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQIT
        MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLHITTRKSPCGEGTNT+DRFE+RVHKRVIDL SSADVVKQIT
Subjt:  MKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQIT

Query:  SITIEPGVEVEVTIADQ
        SITIEPGVEVEVTI+DQ
Subjt:  SITIEPGVEVEVTIADQ

P49200 40S ribosomal protein S20-11.2e-5390Show/hide
Query:  AYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVV
        AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVV
Subjt:  AYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

Q3ZBH8 40S ribosomal protein S202.0e-4069.23Show/hide
Query:  AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQI
        A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ T+DRF++R+HKR+IDL S +++VKQI
Subjt:  AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQI

Query:  TSITIEPGVEVEVTIAD
        TSI+IEPGVEVEVTIAD
Subjt:  TSITIEPGVEVEVTIAD

Q9STY6 40S ribosomal protein S20-21.4e-5490.91Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

Arabidopsis top hitse value%identityAlignment
AT3G45030.1 Ribosomal protein S10p/S20e family protein8.7e-5590Show/hide
Query:  AYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVV
        AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVV
Subjt:  AYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD

AT3G47370.1 Ribosomal protein S10p/S20e family protein1.0e-5590.91Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.2 Ribosomal protein S10p/S20e family protein1.0e-5590.91Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT3G47370.3 Ribosomal protein S10p/S20e family protein1.0e-5590.91Show/hide
Query:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV
        MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DV
Subjt:  MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADV

Query:  VKQITSITIEPGVEVEVTIAD
        VKQITSITIEPGVEVEVTIAD
Subjt:  VKQITSITIEPGVEVEVTIAD

AT5G62300.1 Ribosomal protein S10p/S20e family protein8.7e-5590Show/hide
Query:  AYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVV
        AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNT+DRFELRVHKRVIDLFSS DVV
Subjt:  AYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVV

Query:  KQITSITIEPGVEVEVTIAD
        KQITSITIEPGVEVEVTIAD
Subjt:  KQITSITIEPGVEVEVTIAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTATACAGCAATGAAACCCACAAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCGAAAAACGTCAAGAACCTTGAGAA
AGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATTACAACCAGAAAATCCCCATGTG
GGGAAGGTACAAACACATTCGACAGATTTGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGTTCTGCAGATGTAGTGAAGCAGATTACCTCCATCACCATTGAA
CCTGGTGTTGAGGTTGAGGTCACCATTGCCGATCAATGA
mRNA sequenceShow/hide mRNA sequence
CTTTTTCTCTTTCTTCGACGGCAGACATCTTCTTCTCACCCAATCTCAGATTTGTTTTGGAGATTTAGGATAACCAGAAATTATGGCGTATACAGCAATGAAACCCACAA
AGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCGAAAAACGTCAAGAACCTTGAGAAAGTTTGTGCCGACTTGGTTCGTGGTGCC
AAGGACAAGAGGTTGAGGGTCAAGGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATTACAACCAGAAAATCCCCATGTGGGGAAGGTACAAACACATTCGACAGATT
TGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGTTCTGCAGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACCATTG
CCGATCAATGAGTTTTCTCATTTCATGTATTTTTCGTCCTATTTTTAGTCTCATTAGACAGATGTTACTTTTTGGGTTAATGCAATAGTTTTTTACCGTTACATGGTTGA
AATTAACGACATTGAGAGAATTTTGTAAACCTGGTAATTTTCTTGCATTATCTTATGCGTTTTAATTATCTTCTCTATTAGGGTTTCAATATGCAGAGCTTTCAAATGTC
TAATTTTTACCATTACATGGTTGATTATTTACAATCCAATCAAGTTGTC
Protein sequenceShow/hide protein sequence
MAYTAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTFDRFELRVHKRVIDLFSSADVVKQITSITIE
PGVEVEVTIADQ