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Sed0022102 (gene) of Chayote v1 genome

Gene IDSed0022102
OrganismSechium edule (Chayote v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationLG08:715790..716962
RNA-Seq ExpressionSed0022102
SyntenySed0022102
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.0e-1432.47Show/hide
Query:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP
        ++SS  SPW ++ +C   F      ++ DG  ISF  D W  ++PL+ + PR F  S NK GSV +FW+P+++ W       L D E      +   L  
Subjt:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP

Query:  SLTRKG--VKIWSLENSGIFSVKSLVKAIDQSDAIPS----NLFKSLWKSKYLK
         L  +G    +W+L ++ IF   S+ +AI ++   P+    NL+K+LWK ++ K
Subjt:  SLTRKG--VKIWSLENSGIFSVKSLVKAIDQSDAIPS----NLFKSLWKSKYLK

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.1e-1433.77Show/hide
Query:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP
        +YSS  SPW ++  C   F      ++ DG  ISF  D W  +SPL+   PR F  S NK GSV D W+P+   W+      L D E      +   L  
Subjt:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP

Query:  SLTRKGVK--IWSLENSGIFSVKSLVKAIDQSDAIPSN----LFKSLWKSKYLK
         L  +G    +W L ++ IF   S+ K + ++ A P+N    L+K+LWK  + K
Subjt:  SLTRKGVK--IWSLENSGIFSVKSLVKAIDQSDAIPSN----LFKSLWKSKYLK

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.3e-1433.77Show/hide
Query:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP
        +YSS  SPW ++  C   F      ++ DG  ISF  D W  +SPL+ + PR F  S NK GSV D W+P+   W+      L D E      +   L  
Subjt:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP

Query:  SLTRKGVK--IWSLENSGIFSVKSLVKAIDQSDAIPSN----LFKSLWKSKYLK
         L  +G    +W L ++ IF   S+ K + ++ A P+N    L+K+LWK  + K
Subjt:  SLTRKGVK--IWSLENSGIFSVKSLVKAIDQSDAIPSN----LFKSLWKSKYLK

TYK22579.1 hypothetical protein E5676_scaffold584G00340 [Cucumis melo var. makuwa]3.4e-1836.08Show/hide
Query:  WKVNLVQYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERL
        W       +SLRSPW SI + WKK +  +  +LG+G  ++F  D WA + PL     + F  +    GSV   WD  T+SW+  FR LL D+E  D + L
Subjt:  WKVNLVQYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERL

Query:  ILILSPSLTR-KGVKIWSLENSGIFSVKSLVKAIDQSDAIPSNLFKSLWKSKYLKFSN
        +L+ S  +   +  +IWSL+  G +SVKSL   +  S  +    +K+LWK+  L+  N
Subjt:  ILILSPSLTR-KGVKIWSLENSGIFSVKSLVKAIDQSDAIPSNLFKSLWKSKYLKFSN

XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]4.9e-1737.24Show/hide
Query:  SLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAI---DSERLILILSP
        SL+SPW SI K W K +  +  +LG+G+ I+F  D W   SP N  F   F  +   +GSV D WD   +SWS +FR  L D+E     D  R I+  SP
Subjt:  SLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAI---DSERLILILSP

Query:  SLTRKGVKIWSLENSGIFSVKSLVKAIDQSDAIPSNLFKSLWKSK
        SL+    ++WS+ N+  ++VKSL   +     +   +F ++WK+K
Subjt:  SLTRKGVKIWSLENSGIFSVKSLVKAIDQSDAIPSNLFKSLWKSK

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.4e-1432.47Show/hide
Query:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP
        ++SS  SPW ++ +C   F      ++ DG  ISF  D W  ++PL+ + PR F  S NK GSV +FW+P+++ W       L D E      +   L  
Subjt:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP

Query:  SLTRKG--VKIWSLENSGIFSVKSLVKAIDQSDAIPS----NLFKSLWKSKYLK
         L  +G    +W+L ++ IF   S+ +AI ++   P+    NL+K+LWK ++ K
Subjt:  SLTRKG--VKIWSLENSGIFSVKSLVKAIDQSDAIPS----NLFKSLWKSKYLK

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein2.5e-1433.77Show/hide
Query:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP
        +YSS  SPW ++  C   F      ++ DG  ISF  D W  +SPL+   PR F  S NK GSV D W+P+   W+      L D E      +   L  
Subjt:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP

Query:  SLTRKGVK--IWSLENSGIFSVKSLVKAIDQSDAIPSN----LFKSLWKSKYLK
         L  +G    +W L ++ IF   S+ K + ++ A P+N    L+K+LWK  + K
Subjt:  SLTRKGVK--IWSLENSGIFSVKSLVKAIDQSDAIPSN----LFKSLWKSKYLK

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.1e-1433.77Show/hide
Query:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP
        +YSS  SPW ++  C   F      ++ DG  ISF  D W  +SPL+ + PR F  S NK GSV D W+P+   W+      L D E      +   L  
Subjt:  QYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILILSP

Query:  SLTRKGVK--IWSLENSGIFSVKSLVKAIDQSDAIPSN----LFKSLWKSKYLK
         L  +G    +W L ++ IF   S+ K + ++ A P+N    L+K+LWK  + K
Subjt:  SLTRKGVK--IWSLENSGIFSVKSLVKAIDQSDAIPSN----LFKSLWKSKYLK

A0A5D3BQW7 Uncharacterized protein7.9e-1334.03Show/hide
Query:  LRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILI----LSP
        LRSPW S+ + W K D  +   LG+   ++F  D W S+ P N + PR F  +   +G V D+WD   +SW   F  LL   + I +  + +      SP
Subjt:  LRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERLILI----LSP

Query:  SLTRKGVKIWSLENSGIFSVKSLVKAIDQSDAIPSNLFKSLWKS
        S ++   ++ SL  SG F+VKS+   +  S  +   LFK++WKS
Subjt:  SLTRKGVKIWSLENSGIFSVKSLVKAIDQSDAIPSNLFKSLWKS

A0A5D3DH32 Uncharacterized protein1.6e-1836.08Show/hide
Query:  WKVNLVQYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERL
        W       +SLRSPW SI + WKK +  +  +LG+G  ++F  D WA + PL     + F  +    GSV   WD  T+SW+  FR LL D+E  D + L
Subjt:  WKVNLVQYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPTTSSWSFSFRWLLFDDEAIDSERL

Query:  ILILSPSLTR-KGVKIWSLENSGIFSVKSLVKAIDQSDAIPSNLFKSLWKSKYLKFSN
        +L+ S  +   +  +IWSL+  G +SVKSL   +  S  +    +K+LWK+  L+  N
Subjt:  ILILSPSLTR-KGVKIWSLENSGIFSVKSLVKAIDQSDAIPSNLFKSLWKSKYLKFSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAGAGCGACCGGTAAAAAGGGTTGTAGTCCCATTCTTGTTCCTTCTTTCTGGCTGGTATCTTGGGGAAGATCTTTGCCTACTTTTAAGCCTTGGAAGGTTAA
CCTTGTGCAATATTCTAGCCTGAGAAGTCCTTGGCATAGTATCTTCAAGTGCTGGAAGAAATTTGATCACTTCTCCGTCCTCGAGTTAGGTGATGGGAATTGTATCTCCT
TTCGGTTTGATAAATGGGCATCGGATTCTCCTTTAAACGAGTCATTTCCTCGGCGTTTTTTGGCATCGAATAACAAAGATGGTTCAGTGGTTGATTTTTGGGATCCCACC
ACTTCTTCCTGGAGCTTCTCCTTTAGATGGCTGCTATTTGATGATGAGGCAATTGATTCTGAGAGATTAATTCTTATCTTGTCTCCTTCTTTGACAAGGAAAGGTGTCAA
GATTTGGTCCCTTGAAAATAGTGGTATCTTCTCTGTGAAGTCCCTTGTTAAAGCTATTGATCAATCTGATGCTATCCCCTCTAATCTTTTCAAAAGCTTATGGAAATCAA
AATATCTGAAGTTCTCCAACGAAAGCTGTCCAAGACCATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGAGAGCGACCGGTAAAAAGGGTTGTAGTCCCATTCTTGTTCCTTCTTTCTGGCTGGTATCTTGGGGAAGATCTTTGCCTACTTTTAAGCCTTGGAAGGTTAA
CCTTGTGCAATATTCTAGCCTGAGAAGTCCTTGGCATAGTATCTTCAAGTGCTGGAAGAAATTTGATCACTTCTCCGTCCTCGAGTTAGGTGATGGGAATTGTATCTCCT
TTCGGTTTGATAAATGGGCATCGGATTCTCCTTTAAACGAGTCATTTCCTCGGCGTTTTTTGGCATCGAATAACAAAGATGGTTCAGTGGTTGATTTTTGGGATCCCACC
ACTTCTTCCTGGAGCTTCTCCTTTAGATGGCTGCTATTTGATGATGAGGCAATTGATTCTGAGAGATTAATTCTTATCTTGTCTCCTTCTTTGACAAGGAAAGGTGTCAA
GATTTGGTCCCTTGAAAATAGTGGTATCTTCTCTGTGAAGTCCCTTGTTAAAGCTATTGATCAATCTGATGCTATCCCCTCTAATCTTTTCAAAAGCTTATGGAAATCAA
AATATCTGAAGTTCTCCAACGAAAGCTGTCCAAGACCATTTTAA
Protein sequenceShow/hide protein sequence
MEKRATGKKGCSPILVPSFWLVSWGRSLPTFKPWKVNLVQYSSLRSPWHSIFKCWKKFDHFSVLELGDGNCISFRFDKWASDSPLNESFPRRFLASNNKDGSVVDFWDPT
TSSWSFSFRWLLFDDEAIDSERLILILSPSLTRKGVKIWSLENSGIFSVKSLVKAIDQSDAIPSNLFKSLWKSKYLKFSNESCPRPF