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Sed0022272 (gene) of Chayote v1 genome

Gene IDSed0022272
OrganismSechium edule (Chayote v1)
DescriptionUvrABC system protein C
Genome locationLG04:2710421..2710951
RNA-Seq ExpressionSed0022272
SyntenySed0022272
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY11806.1 UvrABC system protein C [Theobroma cacao]3.1e-0748.72Show/hide
Query:  YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA-----RRRRFLRLHHHH
        Y +H+Y M++EKRQLFLRSYQF +K S+ ++IK+SL++++RV+W RL++      S L R      RRRRF+RL ++H
Subjt:  YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA-----RRRRFLRLHHHH

KAG6590523.1 hypothetical protein SDJN03_15946, partial [Cucurbita argyrosperma subsp. sororia]5.6e-1762.63Show/hide
Query:  NSIDSDNVYGHND----RTESLR-YYSDHDY-SMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLL--SASASGLRRARRRRFLRLHH
        N +DSDN+Y H+     R+ESLR YYSD  Y S ++EKRQLFLRSYQF  K SVPQKI  SLLK++RVIWVRLKNLL  S       R+RRRR +RLHH
Subjt:  NSIDSDNVYGHND----RTESLR-YYSDHDY-SMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLL--SASASGLRRARRRRFLRLHH

XP_012088797.1 uncharacterized protein LOC105647357 [Jatropha curcas]1.1e-0749.4Show/hide
Query:  RTESLRYYSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKN-------LLSASASGLRRARRRRFLRL
        R++SL  Y++H+ S+++EKRQLFLRSYQFS+K S+ +K+KKSL ++++VIW+RL++       + S     L   RRRRFLRL
Subjt:  RTESLRYYSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKN-------LLSASASGLRRARRRRFLRL

XP_017976896.1 PREDICTED: uncharacterized protein LOC18600659 [Theobroma cacao]9.6e-0950Show/hide
Query:  RTESLRY-YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA-----RRRRFLRLHHHH
        RTES+ Y Y +H+Y M++EKRQLFLRSYQF +K S+ ++IK+SL++++RV+W RL++      S L R      RRRRF+RL ++H
Subjt:  RTESLRY-YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA-----RRRRFLRLHHHH

XP_021282816.1 uncharacterized protein LOC110415473 [Herrania umbratica]1.8e-0744.44Show/hide
Query:  NSIDSDNVYGHNDRTESLRY-YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA-----RRRRFLRLHHHH
        +S+D+ N      RTE + Y Y +H+Y +++EKRQLFLRSYQF +K S+ ++IK+SL++++RV+W RL++      S L R      RRRRF+RL ++H
Subjt:  NSIDSDNVYGHNDRTESLRY-YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA-----RRRRFLRLHHHH

TrEMBL top hitse value%identityAlignment
A0A061F445 UvrABC system protein C1.5e-0748.72Show/hide
Query:  YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA-----RRRRFLRLHHHH
        Y +H+Y M++EKRQLFLRSYQF +K S+ ++IK+SL++++RV+W RL++      S L R      RRRRF+RL ++H
Subjt:  YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA-----RRRRFLRLHHHH

A0A067EMF8 Uncharacterized protein1.6e-0641.76Show/hide
Query:  VYGHNDRTESLRYYSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNL-----LSASASGLRRARRRRFLRLHHHH
        +Y H     ++ Y + + Y   +EKRQLFLRSYQF +K S+ ++++ SL +++RVIW+RLKN      L  S       RRRRF+RL + H
Subjt:  VYGHNDRTESLRYYSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNL-----LSASASGLRRARRRRFLRLHHHH

A0A1R3IUK6 Uncharacterized protein4.3e-0750Show/hide
Query:  RTESLRY---YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKN---LLSASASGLRRA--RRRRFLRLHHHH
        R+ES  Y   Y +H+Y +M+EKRQLFL+SYQF +K ++ +KIK+SL +++RVIW RL++   L     S LR A  RRRRF+RL ++H
Subjt:  RTESLRY---YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKN---LLSASASGLRRA--RRRRFLRLHHHH

A0A6A5NAT9 Uncharacterized protein7.4e-0748.1Show/hide
Query:  RTESLRYYSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA---RRRRFLRL
        RTE   YY +H+Y+ MLEKRQLFLRSYQFS+K S+ ++IK S+ ++ +V+W+RL+++     S  + A   RR RF +L
Subjt:  RTESLRYYSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA---RRRRFLRL

A0A6J1A7U6 uncharacterized protein LOC1104154738.7e-0844.44Show/hide
Query:  NSIDSDNVYGHNDRTESLRY-YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA-----RRRRFLRLHHHH
        +S+D+ N      RTE + Y Y +H+Y +++EKRQLFLRSYQF +K S+ ++IK+SL++++RV+W RL++      S L R      RRRRF+RL ++H
Subjt:  NSIDSDNVYGHNDRTESLRY-YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRA-----RRRRFLRLHHHH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G26731.1 unknown protein1.9e-0746.84Show/hide
Query:  YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKN---LLSASASGLRRA---RRRRFLRLHHHH
        Y    Y   +EKRQLFLRSYQFS+K S  +K+ +S+ +++RV+  RL++   L     S LR A   RRRRF RL H H
Subjt:  YSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKN---LLSASASGLRRA---RRRRFLRLHHHH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTCCACGACAACTCGATCGACTCCGACAACGTTTACGGTCACAACGATCGAACTGAATCGCTGCGATATTATTCGGATCATGACTACTCGATGATGTTGGAAAA
GAGGCAGTTGTTTTTGAGGAGTTATCAGTTCTCCAAGAAACTAAGTGTGCCTCAAAAGATAAAGAAATCTCTTCTCAAAATGAGGAGAGTTATATGGGTGAGGCTCAAGA
ATTTGTTGTCAGCTTCCGCGTCCGGGCTACGACGAGCGCGTAGAAGACGATTTCTTCGCCTCCATCATCACCATATTTGTTTATGA
mRNA sequenceShow/hide mRNA sequence
GATTTGCAAACATGGGCTTCCACGACAACTCGATCGACTCCGACAACGTTTACGGTCACAACGATCGAACTGAATCGCTGCGATATTATTCGGATCATGACTACTCGATG
ATGTTGGAAAAGAGGCAGTTGTTTTTGAGGAGTTATCAGTTCTCCAAGAAACTAAGTGTGCCTCAAAAGATAAAGAAATCTCTTCTCAAAATGAGGAGAGTTATATGGGT
GAGGCTCAAGAATTTGTTGTCAGCTTCCGCGTCCGGGCTACGACGAGCGCGTAGAAGACGATTTCTTCGCCTCCATCATCACCATATTTGTTTATGATCATGGTTGCATC
TATGGGGATCTTTATTACTTGTTATATATTGTTTACTTAATTTCAATAGTAATTTCGGATTATATTTTTAAAATTTCTTTGTTGGGTATTTGACAAATTATATGGAGTTT
TTTTTCGAAACTAATTGATGTCGCCTAAAATCGAATGGGTCAAGTGGTATTTTATTGTTTAGTTGTAAACCAGTTCAACACCAGCGTCGCA
Protein sequenceShow/hide protein sequence
MGFHDNSIDSDNVYGHNDRTESLRYYSDHDYSMMLEKRQLFLRSYQFSKKLSVPQKIKKSLLKMRRVIWVRLKNLLSASASGLRRARRRRFLRLHHHHICL