; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0022288 (gene) of Chayote v1 genome

Gene IDSed0022288
OrganismSechium edule (Chayote v1)
DescriptionRibosomal protein S12
Genome locationContig00107:83526..83897
RNA-Seq ExpressionSed0022288
SyntenySed0022288
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR005679 - Ribosomal protein S12, bacterial-type
IPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ANS54546.1 ribosomal protein S12 [Cynomorium coccineum]1.7e-6399.19Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLR+STRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

QEQ76367.1 ribosomal protein S12 [Solanum tuberosum]8.2e-6398.37Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLR+STRTPKKPNSALRKIAKVRLSNRHDIFA+IPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

YP_003587241.1 ribosomal protein S12 [Citrullus lanatus]1.7e-6399.19Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLR+STRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

YP_003587377.1 ribosomal protein S12 [Cucurbita pepo]7.4e-64100Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

YP_005090462.1 ribosomal protein S12 [Pongamia pinnata]8.2e-6398.37Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLR+STRTPKKPNSALRKIAKVRLSNRHDIFA+IPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

TrEMBL top hitse value%identityAlignment
A0A1B1LNC6 Ribosomal protein S128.0e-6499.19Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLR+STRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

A0A2H5MUV4 Ribosomal protein S124.0e-6398.37Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLR+STRTPKKPNSALRKIAKVRLSNRHDIFA+IPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

A0A7U0IYI4 Ribosomal protein S124.0e-6398.37Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLR+STRTPKKPNSALRKIAKVRLSNRHDIFA+IPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

D5I3B1 Ribosomal protein S128.0e-6499.19Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLR+STRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

D5I3G3 Ribosomal protein S123.6e-64100Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

SwissProt top hitse value%identityAlignment
P60098 Ribosomal protein S12, mitochondrial1.0e-6394.31Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPT NQLIRHGREEKRRTDRTRALDQCPQKQGVCLR+STRTPKKPNSALRKIAKVRLSNRHDIFA+IPGEGHNLQEHS+VL+RGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRR+GRSKYGAE+PK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

P60099 Ribosomal protein S12, mitochondrial1.0e-6394.31Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPT NQLIRHGREEKRRTDRTRALDQCPQKQGVCLR+STRTPKKPNSALRKIAKVRLSNRHDIFA+IPGEGHNLQEHS+VL+RGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRR+GRSKYGAE+PK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

P68535 Ribosomal protein S12, mitochondrial1.1e-6295.12Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MP+LNQLIRHGREEKRRTDRTRALDQCPQKQGVC R+STRTPKKPNSA RKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKD PGVK HCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

Q95869 Ribosomal protein S12, mitochondrial1.1e-6295.12Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPT NQLIRHGREEKRRTDRTRALDQCPQKQGVC R+STRTPKKPNSA RKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRGGRVKD PGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

Q96033 Ribosomal protein S12, mitochondrial7.0e-6596.75Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLR+STRTPKKPNSALRKIAKVRLSNRHDIFA+IPGEGHNLQEHS+VLIRGGRVKDLPGVKFHCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDLLGIPDRR+GRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein3.1e-6090.24Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPT NQLIRHGREEKRRTDRTRALD+CPQK GVC R+STRTPKKPNSA RKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKD PGVK HCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDL+GIP RRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATCG00065.1 ribosomal protein S12A3.6e-4060.98Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPT+ QLIR+ R+  R   ++ AL  CPQ++G C R+ T TPKKPNSALRK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKDLPGV++H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATCG00905.1 ribosomal protein S12C3.6e-4060.98Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPT+ QLIR+ R+  R   ++ AL  CPQ++G C R+ T TPKKPNSALRK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKDLPGV++H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATCG01230.1 ribosomal protein S12B3.6e-4060.98Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPT+ QLIR+ R+  R   ++ AL  CPQ++G C R+ T TPKKPNSALRK+A+VRL++  +I A+IPG GHNLQEHS+VL+RGGRVKDLPGV++H +RG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
          D +G+ DR++GRSKYG +KPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK

ATMG00980.1 Ribosomal protein S12/S23 family protein3.1e-6090.24Show/hide
Query:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG
        MPT NQLIRHGREEKRRTDRTRALD+CPQK GVC R+STRTPKKPNSA RKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRGGRVKD PGVK HCIRG
Subjt:  MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRG

Query:  VKDLLGIPDRRRGRSKYGAEKPK
        VKDL+GIP RRRGRSKYGAEKPK
Subjt:  VKDLLGIPDRRRGRSKYGAEKPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCAGAAGCAAGGAGTATGCCTGCGTCT
TTCAACGAGAACACCGAAAAAACCTAATTCAGCTCTACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATT
TGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTTGCCAGGTGTGAAATTCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGA
AGAAGAGGCAGATCTAAATATGGTGCAGAAAAACCAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTACATTAAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTCGAGCTTTGGATCAATGTCCCCAGAAGCAAGGAGTATGCCTGCGTCT
TTCAACGAGAACACCGAAAAAACCTAATTCAGCTCTACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATT
TGCAGGAACATTCTATGGTGTTAATAAGAGGAGGTAGAGTGAAAGATTTGCCAGGTGTGAAATTCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGA
AGAAGAGGCAGATCTAAATATGGTGCAGAAAAACCAAAATAG
Protein sequenceShow/hide protein sequence
MPTLNQLIRHGREEKRRTDRTRALDQCPQKQGVCLRLSTRTPKKPNSALRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDLPGVKFHCIRGVKDLLGIPDR
RRGRSKYGAEKPK