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Sed0022289 (gene) of Chayote v1 genome

Gene IDSed0022289
OrganismSechium edule (Chayote v1)
DescriptionRibosomal protein L18ae family
Genome locationLG11:67123..72286
RNA-Seq ExpressionSed0022289
SyntenySed0022289
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459564.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo]1.2e-3281.44Show/hide
Query:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        GQGKDA DH RS YTLLRDVED+QVG+YDKPL CFG GIGWF FL GF F +MWY+ATILYFWNAR+DPRERAGL ASAI A+AC IILLIVVAVLL
Subjt:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

XP_022154701.1 uncharacterized protein LOC111021894 isoform X3 [Momordica charantia]4.5e-3277.32Show/hide
Query:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        GQGKDASDH RS YTLLRDVED+QVG+YDKPL CFG GIGWF FL GF F ++WY+AT+LYFWN R+DPRERAGL ASAI A+AC +ILL+VVAVLL
Subjt:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

XP_022946692.1 uncharacterized protein LOC111450686 [Cucurbita moschata]2.0e-3279.38Show/hide
Query:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        GQGKDASDH RS YTLLRDVED+QVG+YDKPL CFG GIGWF FL GFLF VMWY+ATILYFWN+R+DPRERAGL AS+I A+AC +ILL+VVAV L
Subjt:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

XP_022999414.1 uncharacterized protein LOC111493795 [Cucurbita maxima]2.6e-3279.38Show/hide
Query:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        GQGKDASDH RS YTLLRDVED+QVG+YDKPL CFG GIGWF FL GFLF VMWY+ATILYFWN+R+DPRERAGL AS+I A+AC +ILL+VVAV L
Subjt:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

XP_038889607.1 uncharacterized protein LOC120079478 [Benincasa hispida]4.1e-3381.44Show/hide
Query:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        GQGKDASDH RS YTLLRDVED+QVG+YDKPL CFG GIGWF FL GF F +MWY+ATILYFWNAR+DPRERAGL ASAI A+AC IILL+VVAVLL
Subjt:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

TrEMBL top hitse value%identityAlignment
A0A1S3CAZ9 uncharacterized protein LOC1034986585.7e-3381.44Show/hide
Query:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        GQGKDA DH RS YTLLRDVED+QVG+YDKPL CFG GIGWF FL GF F +MWY+ATILYFWNAR+DPRERAGL ASAI A+AC IILLIVVAVLL
Subjt:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

A0A5D3CGZ6 60S ribosomal protein L18a-15.7e-3381.44Show/hide
Query:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        GQGKDA DH RS YTLLRDVED+QVG+YDKPL CFG GIGWF FL GF F +MWY+ATILYFWNAR+DPRERAGL ASAI A+AC IILLIVVAVLL
Subjt:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

A0A6J1DPH7 uncharacterized protein LOC111021894 isoform X32.2e-3277.32Show/hide
Query:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        GQGKDASDH RS YTLLRDVED+QVG+YDKPL CFG GIGWF FL GF F ++WY+AT+LYFWN R+DPRERAGL ASAI A+AC +ILL+VVAVLL
Subjt:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

A0A6J1G4J6 uncharacterized protein LOC1114506869.8e-3379.38Show/hide
Query:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        GQGKDASDH RS YTLLRDVED+QVG+YDKPL CFG GIGWF FL GFLF VMWY+ATILYFWN+R+DPRERAGL AS+I A+AC +ILL+VVAV L
Subjt:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

A0A6J1KAT7 uncharacterized protein LOC1114937951.3e-3279.38Show/hide
Query:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        GQGKDASDH RS YTLLRDVED+QVG+YDKPL CFG GIGWF FL GFLF VMWY+ATILYFWN+R+DPRERAGL AS+I A+AC +ILL+VVAV L
Subjt:  GQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family3.5e-1451.09Show/hide
Query:  DHKRSTYTLLR-DVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWN-ARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        + K+  Y L+R D ED+++G + KPL CFG GIGWF FL GF+F   WY AT LY  +   +DPRER+GL ASAI A+   + L+I V VL+
Subjt:  DHKRSTYTLLR-DVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWN-ARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

AT1G54217.2 Ribosomal protein L18ae family9.1e-1550.53Show/hide
Query:  DASDHKRSTYTLLR-DVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWN-ARKDPRERAGL-ASAIGAVACLIILLIVVAVLL
        D  + K+  Y L+R D ED+++G + KPL CFG GIGWF FL GF+F   WY AT LY  +   +DPRER+GL ASAI A+   + L+I V VL+
Subjt:  DASDHKRSTYTLLR-DVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWN-ARKDPRERAGL-ASAIGAVACLIILLIVVAVLL

AT4G26060.1 Ribosomal protein L18ae family2.9e-2158.24Show/hide
Query:  KDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWN-ARKDPRERAGL-ASAIGAVACLIILLIVV
        KDA    +  YTL++DV++ + G+YDKPL CFG GIGWF FL GF+F  +WY+AT+LYF N  RKDPRERAGL ASAI A+   ++LL++V
Subjt:  KDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWN-ARKDPRERAGL-ASAIGAVACLIILLIVV

AT5G57060.1 FUNCTIONS IN: molecular_function unknown3.8e-2157.61Show/hide
Query:  KDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWN-ARKDPRERAGL-ASAIGAVACLIILLIVVA
        KDA    +  YTL++DV+D + G YDKPL CFG GIGWF FL GF+F  +WY+A  LYF N  RKDPRERAGL ASAI A+   ++LL++ A
Subjt:  KDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWN-ARKDPRERAGL-ASAIGAVACLIILLIVVA

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)3.8e-2157.61Show/hide
Query:  KDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWN-ARKDPRERAGL-ASAIGAVACLIILLIVVA
        KDA    +  YTL++DV+D + G YDKPL CFG GIGWF FL GF+F  +WY+A  LYF N  RKDPRERAGL ASAI A+   ++LL++ A
Subjt:  KDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWN-ARKDPRERAGL-ASAIGAVACLIILLIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAATCATTGGATGATACTAAACCGCCGAGCGACAATGACATGGAGTATTCGCTTGATGACAGCATACCAGAAAATGACGAAGAGATGCTGAATCCAGGGGTTCA
CAAAAGAGCAAAGAAGGATGAAGAGTTGGGTCAAACATCCATAAGAAGTACAAAAAAACGTGGTCGCAGTGGGACGAAAGAGATTACCAGCGTTCGTAGTGAGGGTGAAG
AAACTGGGCAAACTCGAGGCTTTAATCCTTCCAATAAACACCAGTTCCAACATGAATCCAAGTACTCCGATGTGATTTTAACAAATGCATTATCATGCATATTGGGTGGA
GTTTCTTTTTATATTTGTGAGCGTTTAGGCCAAGGAAAAGATGCTTCAGACCATAAAAGGAGCACGTATACACTTCTCAGAGATGTAGAGGATACTCAAGTAGGAATATA
TGACAAACCTCTCCTGTGTTTTGGTCGTGGCATAGGATGGTTTTTTTTCCTATTCGGGTTTTTGTTCCTTGTAATGTGGTACCATGCCACGATTCTCTACTTTTGGAATG
CTCGTAAAGATCCAAGGGAACGAGCTGGATTGGCTTCTGCCATTGGTGCAGTTGCATGTTTGATCATCTTGTTAATCGTCGTAGCTGTTCTTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAATCATTGGATGATACTAAACCGCCGAGCGACAATGACATGGAGTATTCGCTTGATGACAGCATACCAGAAAATGACGAAGAGATGCTGAATCCAGGGGTTCA
CAAAAGAGCAAAGAAGGATGAAGAGTTGGGTCAAACATCCATAAGAAGTACAAAAAAACGTGGTCGCAGTGGGACGAAAGAGATTACCAGCGTTCGTAGTGAGGGTGAAG
AAACTGGGCAAACTCGAGGCTTTAATCCTTCCAATAAACACCAGTTCCAACATGAATCCAAGTACTCCGATGTGATTTTAACAAATGCATTATCATGCATATTGGGTGGA
GTTTCTTTTTATATTTGTGAGCGTTTAGGCCAAGGAAAAGATGCTTCAGACCATAAAAGGAGCACGTATACACTTCTCAGAGATGTAGAGGATACTCAAGTAGGAATATA
TGACAAACCTCTCCTGTGTTTTGGTCGTGGCATAGGATGGTTTTTTTTCCTATTCGGGTTTTTGTTCCTTGTAATGTGGTACCATGCCACGATTCTCTACTTTTGGAATG
CTCGTAAAGATCCAAGGGAACGAGCTGGATTGGCTTCTGCCATTGGTGCAGTTGCATGTTTGATCATCTTGTTAATCGTCGTAGCTGTTCTTCTTTGA
Protein sequenceShow/hide protein sequence
MEESLDDTKPPSDNDMEYSLDDSIPENDEEMLNPGVHKRAKKDEELGQTSIRSTKKRGRSGTKEITSVRSEGEETGQTRGFNPSNKHQFQHESKYSDVILTNALSCILGG
VSFYICERLGQGKDASDHKRSTYTLLRDVEDTQVGIYDKPLLCFGRGIGWFFFLFGFLFLVMWYHATILYFWNARKDPRERAGLASAIGAVACLIILLIVVAVLL