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Sed0022310 (gene) of Chayote v1 genome

Gene IDSed0022310
OrganismSechium edule (Chayote v1)
DescriptionSKP1-like protein
Genome locationLG05:34910848..34912388
RNA-Seq ExpressionSed0022310
SyntenySed0022310
Gene Ontology termsGO:0016310 - phosphorylation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016301 - kinase activity (molecular function)
GO:0097602 - cullin family protein binding (molecular function)
InterPro domainsIPR001232 - S-phase kinase-associated protein 1-like
IPR011333 - SKP1/BTB/POZ domain superfamily
IPR016073 - SKP1 component, POZ domain
IPR016897 - S-phase kinase-associated protein 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589016.1 SKP1-like protein 4, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3072.45Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM
        MSSSK IVL SSDGE F++DEAVA+ SQTIK MIE DCAD+ IP+PNVT SILAKVI+YC+KHVE D KDS A+DD LK WDAEFVKV+Q++L+ LI+
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM

XP_004144851.1 SKP1-like protein 1B [Cucumis sativus]2.5e-3174.49Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM
        MSSSKKIVL SSDGETF VDE VAV SQTIK MIE DCAD+ IPLPNVTS+IL+KVI+YC+ HVE DDKDS  +DD LK WDAEFVKV+Q+ L+ LI+
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM

XP_008447950.1 PREDICTED: SKP1-like protein 1B [Cucumis melo]9.7e-3172.45Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM
        MSSSKKIVL SSDGETF VDE VAV SQTIK MIE DC D+ IPLPNVTS+IL+KV++YC+ HVE DDKDS  +DD LK WDAEFVKV+Q+ L+ LI+
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM

XP_022135870.1 SKP1-like protein 1B [Momordica charantia]2.3e-3276.53Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM
        MSSSKKIVL SSDGETF V+EAVAV SQTIK MIE DCAD+ IPLPNV S+ILAKVI+YC+KHVE DDKDS AVDD+LK WDAE+VKV+Q+ L+ LI+
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM

XP_022928279.1 SKP1-like protein 1A [Cucurbita moschata]7.4e-3172.45Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM
        MSSSK IVL SSDGETF++DEAVA+ SQTIK MIE DCAD+ IP+PNVT SILA+VI+YC+KHVE D KDS A+DD LK WDAEFVKV+Q++L+ LI+
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM

TrEMBL top hitse value%identityAlignment
A0A0A0K4P4 SKP1-like protein1.2e-3174.49Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM
        MSSSKKIVL SSDGETF VDE VAV SQTIK MIE DCAD+ IPLPNVTS+IL+KVI+YC+ HVE DDKDS  +DD LK WDAEFVKV+Q+ L+ LI+
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM

A0A1S3BI15 SKP1-like protein4.7e-3172.45Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM
        MSSSKKIVL SSDGETF VDE VAV SQTIK MIE DC D+ IPLPNVTS+IL+KV++YC+ HVE DDKDS  +DD LK WDAEFVKV+Q+ L+ LI+
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM

A0A5A7U3D8 SKP1-like protein4.7e-3172.45Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM
        MSSSKKIVL SSDGETF VDE VAV SQTIK MIE DC D+ IPLPNVTS+IL+KV++YC+ HVE DDKDS  +DD LK WDAEFVKV+Q+ L+ LI+
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM

A0A6J1C297 SKP1-like protein1.1e-3276.53Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM
        MSSSKKIVL SSDGETF V+EAVAV SQTIK MIE DCAD+ IPLPNV S+ILAKVI+YC+KHVE DDKDS AVDD+LK WDAE+VKV+Q+ L+ LI+
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM

A0A6J1EKE0 SKP1-like protein3.6e-3172.45Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM
        MSSSK IVL SSDGETF++DEAVA+ SQTIK MIE DCAD+ IP+PNVT SILA+VI+YC+KHVE D KDS A+DD LK WDAEFVKV+Q++L+ LI+
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIM

SwissProt top hitse value%identityAlignment
Q39255 SKP1-like protein 1A3.7e-2557.84Show/hide
Query:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAV------DDALKVWDAEFVKVEQHVLYAL
        S+KKIVL SSDGE+F V+EAVA+ SQTI  M+E DC D+ +PLPNVTS ILAKVI+YC++HVE     + AV      DD LK WDA+F+K++Q  L+ L
Subjt:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAV------DDALKVWDAEFVKVEQHVLYAL

Query:  IM
        I+
Subjt:  IM

Q6PL11 SKP1-like protein 11.5e-2155.05Show/hide
Query:  KKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVE---------IDDKDSAAV------DDALKVWDAEFVKVE
        K I L SSDGE F V+EAVA+ SQTI+ MIE DCAD+ IPLPNV S IL+KVI+YC KHV           DD  SAA        + LK WDA+FVKV+
Subjt:  KKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVE---------IDDKDSAAV------DDALKVWDAEFVKVE

Query:  QHVLYALIM
        Q  L+ LI+
Subjt:  QHVLYALIM

Q9FHW7 SKP1-like protein 1B8.2e-2554.39Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDK-----DSAAV-----------DDALKVWDAE
        MS+ +KI L SSDGE F +DEAVA+ SQTIK MIE DC D+ IPLPNVTS IL+KVI+YC++HVE  +K     D+AA            D+ LK WD+E
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDK-----DSAAV-----------DDALKVWDAE

Query:  FVKVEQHVLYALIM
        F+KV+Q  L+ LI+
Subjt:  FVKVEQHVLYALIM

Q9LNT9 SKP1-like protein 49.7e-2661.17Show/hide
Query:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEI-----DDKD--SAAVDDALKVWDAEFVKVEQHVLYA
        + K I+L SSDGE+F ++EAVAV+SQTIK MIE DCAD+ IPLPNVT +ILAKVI+YC+KHVE       DKD   +A +D LK WD+EFVKV+Q  L+ 
Subjt:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEI-----DDKD--SAAVDDALKVWDAEFVKVEQHVLYA

Query:  LIM
        LI+
Subjt:  LIM

Q9SL93 SKP1-like protein 31.7e-2256.86Show/hide
Query:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEI-----DDKD--SAAVDDALKVWDAEFVKVEQHVLYA
        + K I+L SSDGE+F V+EAVAV SQTIK MIE DC D+ IPLPNVT +ILAKVI+YC+KHVE       DKD   +  +  LK WD +FVKV+   L+ 
Subjt:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEI-----DDKD--SAAVDDALKVWDAEFVKVEQHVLYA

Query:  LI
        L+
Subjt:  LI

Arabidopsis top hitse value%identityAlignment
AT1G20140.1 SKP1-like 46.9e-2761.17Show/hide
Query:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEI-----DDKD--SAAVDDALKVWDAEFVKVEQHVLYA
        + K I+L SSDGE+F ++EAVAV+SQTIK MIE DCAD+ IPLPNVT +ILAKVI+YC+KHVE       DKD   +A +D LK WD+EFVKV+Q  L+ 
Subjt:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEI-----DDKD--SAAVDDALKVWDAEFVKVEQHVLYA

Query:  LIM
        LI+
Subjt:  LIM

AT1G75950.1 S phase kinase-associated protein 12.6e-2657.84Show/hide
Query:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAV------DDALKVWDAEFVKVEQHVLYAL
        S+KKIVL SSDGE+F V+EAVA+ SQTI  M+E DC D+ +PLPNVTS ILAKVI+YC++HVE     + AV      DD LK WDA+F+K++Q  L+ L
Subjt:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAV------DDALKVWDAEFVKVEQHVLYAL

Query:  IM
        I+
Subjt:  IM

AT2G25700.1 SKP1-like 31.2e-2356.86Show/hide
Query:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEI-----DDKD--SAAVDDALKVWDAEFVKVEQHVLYA
        + K I+L SSDGE+F V+EAVAV SQTIK MIE DC D+ IPLPNVT +ILAKVI+YC+KHVE       DKD   +  +  LK WD +FVKV+   L+ 
Subjt:  SSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEI-----DDKD--SAAVDDALKVWDAEFVKVEQHVLYA

Query:  LI
        L+
Subjt:  LI

AT3G60010.1 SKP1-like 133.7e-2057.14Show/hide
Query:  SKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVK
        SK ++L SSDGE+F V+EAVAV+SQTI  MIE DC  + +P+ NVT  IL+KVI+YC+KHV + D  +    D LK WDAEF+K
Subjt:  SKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVK

AT5G42190.1 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein5.9e-2654.39Show/hide
Query:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDK-----DSAAV-----------DDALKVWDAE
        MS+ +KI L SSDGE F +DEAVA+ SQTIK MIE DC D+ IPLPNVTS IL+KVI+YC++HVE  +K     D+AA            D+ LK WD+E
Subjt:  MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDK-----DSAAV-----------DDALKVWDAE

Query:  FVKVEQHVLYALIM
        F+KV+Q  L+ LI+
Subjt:  FVKVEQHVLYALIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCGTCGAAGAAGATCGTGCTCACGAGTTCCGATGGCGAAACCTTCTACGTCGACGAGGCCGTTGCTGTAAGGTCTCAGACCATCAAGCGCATGATCGAGGTCGA
TTGCGCCGACTCCGCCATCCCCTTGCCCAATGTCACCAGTTCCATTCTCGCCAAGGTCATTCAGTACTGTGAGAAGCACGTCGAGATCGACGATAAGGACTCCGCGGCTG
TGGATGATGCTCTCAAAGTCTGGGACGCTGAGTTTGTTAAGGTTGAGCAGCATGTTCTCTATGCTCTCATTATGTTTAACGATGCTAAAGGGTCTGTCATTCATCATGTT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCGTCGAAGAAGATCGTGCTCACGAGTTCCGATGGCGAAACCTTCTACGTCGACGAGGCCGTTGCTGTAAGGTCTCAGACCATCAAGCGCATGATCGAGGTCGA
TTGCGCCGACTCCGCCATCCCCTTGCCCAATGTCACCAGTTCCATTCTCGCCAAGGTCATTCAGTACTGTGAGAAGCACGTCGAGATCGACGATAAGGACTCCGCGGCTG
TGGATGATGCTCTCAAAGTCTGGGACGCTGAGTTTGTTAAGGTTGAGCAGCATGTTCTCTATGCTCTCATTATGTTTAACGATGCTAAAGGGTCTGTCATTCATCATGTT
TAA
Protein sequenceShow/hide protein sequence
MSSSKKIVLTSSDGETFYVDEAVAVRSQTIKRMIEVDCADSAIPLPNVTSSILAKVIQYCEKHVEIDDKDSAAVDDALKVWDAEFVKVEQHVLYALIMFNDAKGSVIHHV