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Sed0022311 (gene) of Chayote v1 genome

Gene IDSed0022311
OrganismSechium edule (Chayote v1)
DescriptionGlycine-rich protein family
Genome locationLG04:32233240..32235816
RNA-Seq ExpressionSed0022311
SyntenySed0022311
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594002.1 hypothetical protein SDJN03_13478, partial [Cucurbita argyrosperma subsp. sororia]4.5e-7074.58Show/hide
Query:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH
        MALVF PF R+ IS + +FY+LT C   GKGDD EG  SSG VGYE+P EI  KAL CFNDKYIYSACEE+ RLK SGNVEVP  KTEEYCNGPCL ETH
Subjt:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH

Query:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL
        LVLDCI+G+FSNFLFYN+ATLQDVR+TI AGCGYGPQRGNFDV+EHIRAE D A +ASNK ++GFSFIIL  F+L L
Subjt:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL

XP_008458378.1 PREDICTED: uncharacterized protein LOC103497804 [Cucumis melo]3.7e-7275.14Show/hide
Query:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH
        MAL FL +ARVP+S +++FYLLT+ CFYGK DD E G++ G VG+E+P EI  KAL CFND+YIYSACEE+ RLKESGN+EVP  KTEEYCNGPCL+ET 
Subjt:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH

Query:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL
        LVLDCING+FSNFLFYNRATLQDVR+TI AGCGYGPQRGNFDV+EHI AER NAC+ASN A LGFSF IL  F+LLL
Subjt:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL

XP_022930500.1 uncharacterized protein LOC111436937 [Cucurbita moschata]7.6e-7074.58Show/hide
Query:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH
        MALVF PF R+ IS + +FYLLT C   GKGDD EG  SSG VGYE+P EI  KAL CFNDKYIYSACEE+ RLK SGNVEVP  KTEEYC+GPCL ETH
Subjt:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH

Query:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL
        LVLDCI+G+FSNFLFYN+ATLQDVR+TI AGCGYGPQRGNFDV+EHIRAE D A +ASNK ++GFSFIIL  F+L L
Subjt:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL

XP_023000051.1 uncharacterized protein LOC111494359 [Cucurbita maxima]1.8e-7175.14Show/hide
Query:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH
        MALVF PF R+ IS + +FYLLT C  YGKGDD EG  SSG VGYE+P EI  KAL CFNDKYIYSACEE+ RLK SGNVEVP  +TEEYCNGPCL ETH
Subjt:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH

Query:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL
        LVLDCI+G+FSNFLFYN+ATLQDVR+TI AGCGYGPQRGNFDV+EHIRAE D A +ASNK ++GFSFIIL  F+L L
Subjt:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL

XP_038906636.1 uncharacterized protein LOC120092583 [Benincasa hispida]3.3e-7375.71Show/hide
Query:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH
        MA+VFL FAR+PIS ++I YLLT  CFYGK DD E G++   VG+ +P EI  KAL CFND+YIYSACEE+CRLKESGN+EVPQ KTEEYCNGPCL+ETH
Subjt:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH

Query:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL
        LVLDCING+FSNFLFYNRATLQDVR+TIQAGCGYGPQRGNFDV+EHI+AER NAC+ASNKA+LGF   I   F+LLL
Subjt:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL

TrEMBL top hitse value%identityAlignment
A0A0A0KCE5 Uncharacterized protein1.0e-6772.32Show/hide
Query:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH
        MAL FL FARVP+S +++FYLLT    YGK DD E G++   VG+E+P EI  KAL CFND+YIYSACEE+ RLKESGN+EVP  KTEEYCNGPCL+ET 
Subjt:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH

Query:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL
        LVLDCI+G+FSNFLFYNRATLQDVR+T+ AGCGYGPQRGNFDV+EHI AER NAC+ASN A LGFSF IL   +LLL
Subjt:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL

A0A1S3C8B8 uncharacterized protein LOC1034978041.8e-7275.14Show/hide
Query:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH
        MAL FL +ARVP+S +++FYLLT+ CFYGK DD E G++ G VG+E+P EI  KAL CFND+YIYSACEE+ RLKESGN+EVP  KTEEYCNGPCL+ET 
Subjt:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH

Query:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL
        LVLDCING+FSNFLFYNRATLQDVR+TI AGCGYGPQRGNFDV+EHI AER NAC+ASN A LGFSF IL  F+LLL
Subjt:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL

A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X11.3e-6278Show/hide
Query:  GKGDDVEG-GTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETHLVLDCINGVFSNFLFYNRATLQDVRET
        GKGDDVEG G +SG +GYE+P EI  KAL CFNDKYIY ACEE+CRLKESGNVEVP  KT+E+CNGPCL ETHLVLDCIN +F+NFLFYNRATLQDVR+T
Subjt:  GKGDDVEG-GTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETHLVLDCINGVFSNFLFYNRATLQDVRET

Query:  IQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL
        IQAGC YGPQRGNFDV +HIRAER  AC+ASN A+LGFSFIIL  F  LL
Subjt:  IQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL

A0A6J1EX17 uncharacterized protein LOC1114369373.7e-7074.58Show/hide
Query:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH
        MALVF PF R+ IS + +FYLLT C   GKGDD EG  SSG VGYE+P EI  KAL CFNDKYIYSACEE+ RLK SGNVEVP  KTEEYC+GPCL ETH
Subjt:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH

Query:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL
        LVLDCI+G+FSNFLFYN+ATLQDVR+TI AGCGYGPQRGNFDV+EHIRAE D A +ASNK ++GFSFIIL  F+L L
Subjt:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL

A0A6J1KET4 uncharacterized protein LOC1114943598.8e-7275.14Show/hide
Query:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH
        MALVF PF R+ IS + +FYLLT C  YGKGDD EG  SSG VGYE+P EI  KAL CFNDKYIYSACEE+ RLK SGNVEVP  +TEEYCNGPCL ETH
Subjt:  MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETH

Query:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL
        LVLDCI+G+FSNFLFYN+ATLQDVR+TI AGCGYGPQRGNFDV+EHIRAE D A +ASNK ++GFSFIIL  F+L L
Subjt:  LVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G56320.1 BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT5G49350.2)6.1e-2540.94Show/hide
Query:  IANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETHLVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAE
        +  +A FCFN+  +Y  C E  RL + G  +VP  +T+ +CNGPC AET LVL CIN V S+F+FYNRAT +DVR  ++ GC     RGNF+V ++ +  
Subjt:  IANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETHLVLDCINGVFSNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAE

Query:  RDNACKASNKALLGFSFIILVPFTLLL
               + K L G   ++++ F  L+
Subjt:  RDNACKASNKALLGFSFIILVPFTLLL

AT5G49350.1 Glycine-rich protein family2.6e-3646.1Show/hide
Query:  GKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETHLVLDCINGVFSNFLFYNRATLQDVRETI
        G G    GG   G +G E+P EI  KAL C N+K+IY  C+E+ RL  +G++ +P  +TEE+C GPC +ETHL L+CI  +  ++ F+NRAT+ D+RET+
Subjt:  GKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETHLVLDCINGVFSNFLFYNRATLQDVRETI

Query:  QAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFII
        ++GC YGP+RG F+V+EHI  E +NA +          FII
Subjt:  QAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFII

AT5G49350.2 Glycine-rich protein family2.6e-3646.1Show/hide
Query:  GKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETHLVLDCINGVFSNFLFYNRATLQDVRETI
        G G    GG   G +G E+P EI  KAL C N+K+IY  C+E+ RL  +G++ +P  +TEE+C GPC +ETHL L+CI  +  ++ F+NRAT+ D+RET+
Subjt:  GKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETHLVLDCINGVFSNFLFYNRATLQDVRETI

Query:  QAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFII
        ++GC YGP+RG F+V+EHI  E +NA +          FII
Subjt:  QAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTTGTGTTCTTGCCTTTTGCTAGAGTTCCTATTTCAGTTCTTGTCATCTTCTACCTTCTCACCTTTTGCTGTTTTTATGGAAAAGGAGACGATGTTGAGGGTGG
TACATCGAGCGGCTTAGTCGGTTACGAGAATCCGCTTGAGATTGCTAACAAAGCATTGTTTTGCTTCAATGACAAATATATATACAGCGCGTGTGAAGAAACGTGTAGAT
TGAAGGAGAGTGGGAATGTGGAGGTCCCACAGGCAAAAACCGAGGAATATTGCAACGGGCCGTGTTTGGCTGAAACGCATTTGGTGCTTGATTGCATTAATGGCGTTTTC
AGCAATTTTTTGTTCTACAATAGGGCCACCTTGCAAGATGTTAGGGAAACCATCCAAGCTGGATGTGGCTATGGTCCTCAAAGAGGTAACTTCGATGTGATGGAACATAT
AAGAGCAGAAAGAGACAATGCATGCAAGGCCTCCAACAAGGCACTTCTTGGATTTAGCTTTATCATTTTGGTCCCTTTTACTTTATTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTTGTGTTCTTGCCTTTTGCTAGAGTTCCTATTTCAGTTCTTGTCATCTTCTACCTTCTCACCTTTTGCTGTTTTTATGGAAAAGGAGACGATGTTGAGGGTGG
TACATCGAGCGGCTTAGTCGGTTACGAGAATCCGCTTGAGATTGCTAACAAAGCATTGTTTTGCTTCAATGACAAATATATATACAGCGCGTGTGAAGAAACGTGTAGAT
TGAAGGAGAGTGGGAATGTGGAGGTCCCACAGGCAAAAACCGAGGAATATTGCAACGGGCCGTGTTTGGCTGAAACGCATTTGGTGCTTGATTGCATTAATGGCGTTTTC
AGCAATTTTTTGTTCTACAATAGGGCCACCTTGCAAGATGTTAGGGAAACCATCCAAGCTGGATGTGGCTATGGTCCTCAAAGAGGTAACTTCGATGTGATGGAACATAT
AAGAGCAGAAAGAGACAATGCATGCAAGGCCTCCAACAAGGCACTTCTTGGATTTAGCTTTATCATTTTGGTCCCTTTTACTTTATTGCTTTGA
Protein sequenceShow/hide protein sequence
MALVFLPFARVPISVLVIFYLLTFCCFYGKGDDVEGGTSSGLVGYENPLEIANKALFCFNDKYIYSACEETCRLKESGNVEVPQAKTEEYCNGPCLAETHLVLDCINGVF
SNFLFYNRATLQDVRETIQAGCGYGPQRGNFDVMEHIRAERDNACKASNKALLGFSFIILVPFTLLL