; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0022319 (gene) of Chayote v1 genome

Gene IDSed0022319
OrganismSechium edule (Chayote v1)
Descriptiontranscription factor PRE6
Genome locationLG03:1229950..1231666
RNA-Seq ExpressionSed0022319
SyntenySed0022319
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151201.2 transcription factor PRE6 [Cucumis sativus]4.5e-3492.31Show/hide
Query:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQSS+SRISDD+II L+SKLRQLVPEIRHRR DKVSASKVL ETCNYIRNLHREVD LSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_022134204.1 transcription factor PRE6 [Momordica charantia]1.0e-3391.21Show/hide
Query:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQS  SRISDD+II L+SKLRQLVPEIRHRRSDKVSASKVL ETCNYIRNLHREVD LSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_022939473.1 transcription factor PRE6-like [Cucurbita moschata]8.5e-3389.01Show/hide
Query:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS+RRSR S +SRISDD+II+L+SKLRQLVPEIRHRR DKVSASKVL+ETCNYIRNLHREVD LSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_023548992.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]1.9e-3289.01Show/hide
Query:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS+RRSRQ  +SRISDD+II LISKLR LVPEIRHRRSDKVSASKVL ETCNYIRNLHREVD LSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ

XP_038890645.1 LOW QUALITY PROTEIN: transcription factor PRE6 [Benincasa hispida]2.2e-3390.11Show/hide
Query:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQSS+SRI+DD+II L+SKLRQLVPEIRHRR DKVSASKVL ETCNYIRNLHREVD LSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ

TrEMBL top hitse value%identityAlignment
A0A0A0KXB9 Transcription regulator2.2e-3492.31Show/hide
Query:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQSS+SRISDD+II L+SKLRQLVPEIRHRR DKVSASKVL ETCNYIRNLHREVD LSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A1S3CB29 transcription factor PRE62.2e-3492.31Show/hide
Query:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQSS+SRISDD+II L+SKLRQLVPEIRHRR DKVSASKVL ETCNYIRNLHREVD LSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A5A7T970 Transcription factor PRE62.2e-3492.31Show/hide
Query:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQSS+SRISDD+II L+SKLRQLVPEIRHRR DKVSASKVL ETCNYIRNLHREVD LSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A6J1BY51 transcription factor PRE64.9e-3491.21Show/hide
Query:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MSSRRSRQS  SRISDD+II L+SKLRQLVPEIRHRRSDKVSASKVL ETCNYIRNLHREVD LSERLSQLLSTID+DSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ

A0A6J1FLR3 transcription factor PRE6-like4.1e-3389.01Show/hide
Query:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS+RRSR S +SRISDD+II+L+SKLRQLVPEIRHRR DKVSASKVL+ETCNYIRNLHREVD LSERLSQLLSTIDSDSAEAAIIRSLIMQ
Subjt:  MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI69.8e-2466.3Show/hide
Query:  MSSR--RSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIM
        MSSR  RSRQS SSRI+D++I +L+SKL+ L+PE R R +D+V +S+VL ETCNYIR+LH+EVD LSERLS+LL+T D  SA+AAIIRSL+M
Subjt:  MSSR--RSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIM

Q8GW32 Transcription factor PRE62.3e-2875Show/hide
Query:  MSSR---RSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLI
        MSSR   RSRQS SSRISDD+I +L+SKL+ L+PE+R RRSDKVSASKVL ETCNYIRNLHREVD LS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSSR---RSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLI

Q9FLE9 Transcription factor PRE11.9e-2773.91Show/hide
Query:  MSSRRSRQSSSS-RISDDEIINLISKLRQLVPEI-RHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS+RRSRQSSS+ RISD+++I+L+SKLRQ++PEI + RRSDK SASKVL ETCNYIRNL+REVD LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQSSSS-RISDDEIINLISKLRQLVPEI-RHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIM

Q9LJX1 Transcription factor PRE51.5e-2773.91Show/hide
Query:  MSSRRSRQ-SSSSRISDDEIINLISKLRQLVPEI-RHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS+RRSRQ S++SRISDD++I+L+SKLRQ +PEI   RRSDKVSASKVL ETCNYIR LHREVD LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SSSSRISDDEIINLISKLRQLVPEI-RHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIM

Q9LXG5 Transcription factor PRE21.2e-2473.33Show/hide
Query:  SSRRSRQ-SSSSRISDDEIINLISKLRQLVPEIR-HRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLI
        SSRRSRQ SSSSRISDD+I +LISKLRQ +PEIR +RRS+ VSASKVL ETCNYIRNL++E D LS+RL+QLL +ID +S +AA+IRSLI
Subjt:  SSRRSRQ-SSSSRISDDEIINLISKLRQLVPEIR-HRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLI

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.6e-2975Show/hide
Query:  MSSR---RSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLI
        MSSR   RSRQS SSRISDD+I +L+SKL+ L+PE+R RRSDKVSASKVL ETCNYIRNLHREVD LS+RLS+LL++ D +SAEAAIIRSL+
Subjt:  MSSR---RSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLI

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.3e-2366.32Show/hide
Query:  MSSRRSR---QSSSSRISDDEIINLISKLRQLVPEIR-HRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ
        MS RRSR    S +SRIS+D+I +LI KL+QL+PE+R  RRSDKVSA++VL +TCNYIRNLHREVD LSERLS+LL+  +SD+A+AA+IRSL+ Q
Subjt:  MSSRRSR---QSSSSRISDDEIINLISKLRQLVPEIR-HRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.0e-2873.91Show/hide
Query:  MSSRRSRQ-SSSSRISDDEIINLISKLRQLVPEI-RHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS+RRSRQ S++SRISDD++I+L+SKLRQ +PEI   RRSDKVSASKVL ETCNYIR LHREVD LS+RLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQ-SSSSRISDDEIINLISKLRQLVPEI-RHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIM

AT5G15160.1 BANQUO 28.3e-2673.33Show/hide
Query:  SSRRSRQ-SSSSRISDDEIINLISKLRQLVPEIR-HRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLI
        SSRRSRQ SSSSRISDD+I +LISKLRQ +PEIR +RRS+ VSASKVL ETCNYIRNL++E D LS+RL+QLL +ID +S +AA+IRSLI
Subjt:  SSRRSRQ-SSSSRISDDEIINLISKLRQLVPEIR-HRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLI

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.4e-2873.91Show/hide
Query:  MSSRRSRQSSSS-RISDDEIINLISKLRQLVPEI-RHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIM
        MS+RRSRQSSS+ RISD+++I+L+SKLRQ++PEI + RRSDK SASKVL ETCNYIRNL+REVD LSERLSQLL ++D DS EAA+IRSL+M
Subjt:  MSSRRSRQSSSS-RISDDEIINLISKLRQLVPEI-RHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAGCAGAAGGTCAAGGCAGTCAAGTTCTTCCCGAATCAGCGACGACGAAATCATCAACCTCATTTCCAAGCTCCGCCAGCTCGTCCCCGAGATTCGTCATCGTCG
CTCCGACAAGGTATCAGCTTCAAAAGTCCTCAATGAGACCTGCAATTACATTAGAAACTTGCACAGAGAAGTTGATGGCCTAAGTGAGAGACTTTCTCAGCTGTTATCTA
CAATAGATTCTGATAGTGCAGAGGCAGCCATAATTAGAAGCTTAATTATGCAATAG
mRNA sequenceShow/hide mRNA sequence
TCTCTCTTCTTCTATCCCTTGTGGTCCTTCCTCTTTATAACCCTCTTATCACTTCCCCCTTCCTTCAAACCTACCAAGTTTCTAACTGAAACTGCCCTCTTTTCTTCTCT
CTCTTAACACACTTTCTCTTCATCTTCCACTTTTTGGTTTTTGTTGCCTTTTTCAAAACAAACTCTCCTTCCACTCTCTCTTACATTAATCACCATGTCTAGCAGAAGGT
CAAGGCAGTCAAGTTCTTCCCGAATCAGCGACGACGAAATCATCAACCTCATTTCCAAGCTCCGCCAGCTCGTCCCCGAGATTCGTCATCGTCGCTCCGACAAGGTATCA
GCTTCAAAAGTCCTCAATGAGACCTGCAATTACATTAGAAACTTGCACAGAGAAGTTGATGGCCTAAGTGAGAGACTTTCTCAGCTGTTATCTACAATAGATTCTGATAG
TGCAGAGGCAGCCATAATTAGAAGCTTAATTATGCAATAGGGAAAGAATTACAAGAACATGGTTGTTGGTTTGGTAATGCTATATATATATATATAGATATATATTTATA
TATAAGATATGATGTTACTATGTTATTTATATGTGTGGGTTTTTGATATTCCCTTTTCTAGGTTTTCGGTCGCTTAGATCAAAAAAGGGAAATTAAAAAAAGGGTGTATT
TTTCCTTGAAATGAGA
Protein sequenceShow/hide protein sequence
MSSRRSRQSSSSRISDDEIINLISKLRQLVPEIRHRRSDKVSASKVLNETCNYIRNLHREVDGLSERLSQLLSTIDSDSAEAAIIRSLIMQ