CuGenDBv2

Gene ID	Sed0022343
Organism	Sechium edule (Chayote v1)
Description	late embryogenesis abundant protein At5g17165-like
Genome location	LG05:4300781..4302113
RNA-Seq Expression	Sed0022343
Synteny	Sed0022343
Gene Ontology terms	NA
InterPro domains	IPR039291 - Late embryogenesis abundant protein At5g17165-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605657.1 ATP-dependent DNA helicase SRS2-like protein, partial [Cucurbita argyrosperma subsp. sororia]

6.6e-22

56.67

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Query:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL
        AR RLA  + P+        LSP   T  +  GHW+A  KNP E++CP +VPDHM+   SE+YWAPHPQTGVFGPP    +  P+DTS  GGA+E GSVL
Subjt:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL

Query:  DLKVWFRHNGLEDTEKPHFL
        +LKVWFRH  LED EKPH L
Subjt:  DLKVWFRHNGLEDTEKPHFL

XP_022957877.1 late embryogenesis abundant protein At5g17165-like [Cucurbita moschata]

4.0e-19

58.04

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Query:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL
        AR RLA L+ P+        LSP   T  +  GHW+A  KNP E++CP +VPDHMI   SE+YWAPHPQTGVFGPP    +  P+DTS AGGA+E GSVL
Subjt:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL

Query:  DLKVWFRHNGLE
        +LKVWFRH  LE
Subjt:  DLKVWFRHNGLE

XP_022995249.1 late embryogenesis abundant protein At5g17165-like [Cucurbita maxima]

2.1e-23

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Query:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL
        AR RLA L+ PV        LSP   T  +  GHW+A  KNP E++CP +VPDHMI   SE+YWAPHPQTGVFGPP +  +  P+DTS AGGA+E GSVL
Subjt:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL

Query:  DLKVWFRHNGLEDTEKPHFL
        +LKVWFRH  LED EKPH L
Subjt:  DLKVWFRHNGLEDTEKPHFL

XP_023532525.1 late embryogenesis abundant protein At5g17165-like [Cucurbita pepo subsp. pepo]

4.6e-23

59.17

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Query:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL
        AR RLA L+ P+        LSP   T  +  GHW+A  KNP E++CP +VPDHMI   SE+YWAPHPQTGVFGPP    +  P+DTS AGGA+E GSVL
Subjt:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL

Query:  DLKVWFRHNGLEDTEKPHFL
        +LKVWFRH  LED EKPH L
Subjt:  DLKVWFRHNGLEDTEKPHFL

XP_038875585.1 late embryogenesis abundant protein At5g17165-like [Benincasa hispida]

4.7e-20

59.09

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Query:  TSTGPTLSPPYLTRSSTF----GHWAA--KNP-EQICP-MVPDHMIQPS-SENYWAPHPQTGVFGPP-AHKSSA--PNDTSAAGGAREAGSVLDLKVWFR
        +S   +LS  +L  S+TF     HW+A  KNP EQI P +VPDH+I  + SENYWAPHP+TGVFGPP AH+S++  PNDTSA G   +  SVLD+K WFR
Subjt:  TSTGPTLSPPYLTRSSTF----GHWAA--KNP-EQICP-MVPDHMIQPS-SENYWAPHPQTGVFGPP-AHKSSA--PNDTSAAGGAREAGSVLDLKVWFR

Query:  HNGLEDTEKP
        HNGLED EKP
Subjt:  HNGLEDTEKP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KRJ5 Uncharacterized protein

9.7e-19

55.83

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Query:  VDATSTGPTLS----PPYLTRSSTFG----HWAA--KNPE-QICP-MVPDHMI-QPSSENYWAPHPQTGVFGPP-AH--KSSAPNDTSAAGGAREAGSVL
        V A +  P LS      YL     FG    HW+A  KN E QI P MVP+H+I +  SE+YW PHP+TGVFGPP AH   S+ PNDTSA G     GSVL
Subjt:  VDATSTGPTLS----PPYLTRSSTFG----HWAA--KNPE-QICP-MVPDHMI-QPSSENYWAPHPQTGVFGPP-AH--KSSAPNDTSAAGGAREAGSVL

Query:  DLKVWFRHNGLEDTEKPHFL
        +LK WFRHNGLED EKPH L
Subjt:  DLKVWFRHNGLEDTEKPHFL

A0A1S4E6U6 uncharacterized protein LOC103504694

8.2e-18

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Query:  PYLTRSSTFGHWAAKNPEQICP----MVPDHMIQPS-SENYWAPHPQTGVFGPP-AHKSSA--PNDTSAAGGAREAGSVLDLKVWFRHNGLEDTEKPHFL
        P+        HW+A    Q  P    MVP+ +I  + S+NYW PHPQTGVFGPP AH +S+  PNDTSA G     GSVL+LK WFRHNGLED EKPH L
Subjt:  PYLTRSSTFGHWAAKNPEQICP----MVPDHMIQPS-SENYWAPHPQTGVFGPP-AHKSSA--PNDTSAAGGAREAGSVLDLKVWFRHNGLEDTEKPHFL

A0A5A7UIY1 Uncharacterized protein

1.6e-18

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Query:  PYLTRSSTFGHWAAKNPEQICP----MVPDHMIQPS-SENYWAPHPQTGVFGPP-AH--KSSAPNDTSAAGGAREAGSVLDLKVWFRHNGLEDTEKPHFL
        P+        HW+A    Q  P    MVP+ +I  + S+NYW PHPQTGVFGPP AH   S+ PNDTSA  G  E GSVL+LK WFRHNGLED EKPH L
Subjt:  PYLTRSSTFGHWAAKNPEQICP----MVPDHMIQPS-SENYWAPHPQTGVFGPP-AH--KSSAPNDTSAAGGAREAGSVLDLKVWFRHNGLEDTEKPHFL

A0A6J1H0D3 late embryogenesis abundant protein At5g17165-like

1.9e-19

58.04

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Query:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL
        AR RLA L+ P+        LSP   T  +  GHW+A  KNP E++CP +VPDHMI   SE+YWAPHPQTGVFGPP    +  P+DTS AGGA+E GSVL
Subjt:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL

Query:  DLKVWFRHNGLE
        +LKVWFRH  LE
Subjt:  DLKVWFRHNGLE

A0A6J1K564 late embryogenesis abundant protein At5g17165-like

1.0e-23

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Query:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL
        AR RLA L+ PV        LSP   T  +  GHW+A  KNP E++CP +VPDHMI   SE+YWAPHPQTGVFGPP +  +  P+DTS AGGA+E GSVL
Subjt:  ARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAA--KNP-EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPP-AHKSSAPNDTSAAGGAREAGSVL

Query:  DLKVWFRHNGLEDTEKPHFL
        +LKVWFRH  LED EKPH L
Subjt:  DLKVWFRHNGLEDTEKPHFL

SwissProt top hits

e value

%identity

Alignment

F4KFM8 Late embryogenesis abundant protein At5g17165

6.5e-12

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Query:  EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPPAHKSSAPNDTSAAGGAREAGSVLDLKVWFRHNGLEDTEKPH
        E++ P  VPD MI+P S+ YW+PHPQTGVFGP    SS+ N      G +E  SV++ K WFR   LED +K H
Subjt:  EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPPAHKSSAPNDTSAAGGAREAGSVLDLKVWFRHNGLEDTEKPH

Arabidopsis top hits

e value

%identity

Alignment

AT3G03150.1 unknown protein

1.0e-12

43.14

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Query:  STGPTLSPPYLTRSSTFGHWAA--KNPEQ--ICPMVPDHMIQPSSENYWAPHPQTGVFGPPAHKSSAPNDTSAAGGAREAGSVLDLKVWFRHNGLEDTEK
        ST  T S  + +R S  GH +A  KN E       VPD +I+P S+ YW+PHP+TGVFGP   + SA      A GA +  +VL+   WFR   LED++K
Subjt:  STGPTLSPPYLTRSSTFGHWAA--KNPEQ--ICPMVPDHMIQPSSENYWAPHPQTGVFGPPAHKSSAPNDTSAAGGAREAGSVLDLKVWFRHNGLEDTEK

Query:  PH
         H
Subjt:  PH

AT5G17165.1 unknown protein

4.6e-13

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Query:  EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPPAHKSSAPNDTSAAGGAREAGSVLDLKVWFRHNGLEDTEKPH
        E++ P  VPD MI+P S+ YW+PHPQTGVFGP    SS+ N      G +E  SV++ K WFR   LED +K H
Subjt:  EQICP-MVPDHMIQPSSENYWAPHPQTGVFGPPAHKSSAPNDTSAAGGAREAGSVLDLKVWFRHNGLEDTEKPH

Sequences

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CDS sequence

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ATGGCCCGACGACGACTCGCCGATTTGCAGAAGCCAGTCGATGCTACCTCAACCGGGCCAACCCTTTCTCCTCCCTACCTCACTCGCTCTTCAACCTTCGGTCATTGGGC
AGCGAAGAATCCAGAGCAAATCTGCCCGATGGTGCCAGATCATATGATCCAACCGTCATCTGAAAACTACTGGGCGCCACATCCACAAACTGGAGTTTTTGGGCCGCCGG
CCCACAAGAGTTCAGCTCCGAACGACACGTCGGCTGCAGGTGGTGCTCGCGAAGCGGGCTCAGTTCTGGACCTTAAGGTTTGGTTCCGACACAACGGCCTCGAGGACACT
GAGAAACCACATTTTCTGTGA

mRNA sequence

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AAAACATTATTTTGAAAACTTTTTCATTATTTTTCATTTCTCCATTCTTAGCTCTTTCCCTTGCTTGGTTGCCATGGCCCGACGACGACTCGCCGATTTGCAGAAGCCAG
TCGATGCTACCTCAACCGGGCCAACCCTTTCTCCTCCCTACCTCACTCGCTCTTCAACCTTCGGTCATTGGGCAGCGAAGAATCCAGAGCAAATCTGCCCGATGGTGCCA
GATCATATGATCCAACCGTCATCTGAAAACTACTGGGCGCCACATCCACAAACTGGAGTTTTTGGGCCGCCGGCCCACAAGAGTTCAGCTCCGAACGACACGTCGGCTGC
AGGTGGTGCTCGCGAAGCGGGCTCAGTTCTGGACCTTAAGGTTTGGTTCCGACACAACGGCCTCGAGGACACTGAGAAACCACATTTTCTGTGA

Protein sequence

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MARRRLADLQKPVDATSTGPTLSPPYLTRSSTFGHWAAKNPEQICPMVPDHMIQPSSENYWAPHPQTGVFGPPAHKSSAPNDTSAAGGAREAGSVLDLKVWFRHNGLEDT
EKPHFL

Sed0022343 (gene) of Chayote v1 genome