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Sed0022356 (gene) of Chayote v1 genome

Gene IDSed0022356
OrganismSechium edule (Chayote v1)
Descriptionprotein RADIALIS-like 1
Genome locationLG04:47374200..47374625
RNA-Seq ExpressionSed0022356
SyntenySed0022356
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572041.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]6.8e-3586.21Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRGKM
        MASMSS GS+AWT MQNKAFEKALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLL+ DVKHIESG+VPFPYRN+SD+LPRKRG++
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRGKM

XP_022136148.1 protein RADIALIS-like 1 [Momordica charantia]1.4e-3286.05Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS-DNLPRKRG
        MASMSS GSSAWTAMQNKAFE+ALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLLVEDVKHIESGHVPFPY+ ++ D+ P KRG
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS-DNLPRKRG

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]2.0e-3488.24Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG
        MASMSS GS+AWT MQNKAFEKALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLL+ DVKHIESG+VPFPYRN+SD+LPRKRG
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG

XP_022972527.1 protein RADIALIS-like 1 [Cucurbita maxima]5.7e-3487.06Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG
        MASMSS GS+AWT MQNKAFEKALAVYDQDTPERWLNV+K VGEK EEEVKRHYQLL+ DVKHIESG+VPFPYRN+SD+LPRKRG
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]2.6e-3487.06Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG
        MASMSSHGS+AWTAMQNK FEKALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLL++DVKHIESG+VPFPY ++SD+LPRKRG
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG

TrEMBL top hitse value%identityAlignment
A0A1S3BHZ4 protein RADIALIS-like 21.3e-3182.76Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS--DNLPRKRG
        MASMSSHGS+AWT MQNK FEKALA YDQDTPERW+NV+KAVGEK EEEVKRHYQLL+ DVKHIESG+VPFPY  TS  D+LPRKRG
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS--DNLPRKRG

A0A5D3D8F6 Protein RADIALIS-like 21.3e-3182.76Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS--DNLPRKRG
        MASMSSHGS+AWT MQNK FEKALA YDQDTPERW+NV+KAVGEK EEEVKRHYQLL+ DVKHIESG+VPFPY  TS  D+LPRKRG
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS--DNLPRKRG

A0A6J1C6U4 protein RADIALIS-like 16.8e-3386.05Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS-DNLPRKRG
        MASMSS GSSAWTAMQNKAFE+ALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLLVEDVKHIESGHVPFPY+ ++ D+ P KRG
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS-DNLPRKRG

A0A6J1GK35 protein RADIALIS-like 19.5e-3588.24Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG
        MASMSS GS+AWT MQNKAFEKALAVYDQDTPERWLNV+KAVGEK EEEVKRHYQLL+ DVKHIESG+VPFPYRN+SD+LPRKRG
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG

A0A6J1I517 protein RADIALIS-like 12.8e-3487.06Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG
        MASMSS GS+AWT MQNKAFEKALAVYDQDTPERWLNV+K VGEK EEEVKRHYQLL+ DVKHIESG+VPFPYRN+SD+LPRKRG
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.1e-2368.42Show/hide
Query:  ASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS
        +SMSS  S +WTA QNKAFE+ALA YDQDTP RW NV+K VG K  EEVKRHY+LLV+D+  IE+GHVPFP   TS
Subjt:  ASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS

Q58FS3 Transcription factor RADIALIS2.2e-2060.49Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFP-YRNTSDNL
        MAS    G   W+A +NKAFE+ALAVYD+DTP+RW NV++AV  +  EEVK+HY++LVED+K+IESG VPFP YR T  N+
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFP-YRNTSDNL

Q6NNN0 Protein RADIALIS-like 31.4e-1958.75Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFP-YRNTSDN
        MAS S   S++WT  +NK FE+ALA YDQDTP+RW NV++AVG K+ EEV+RHY+LL+ DV  IESG  P P YR+  +N
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFP-YRNTSDN

Q8GW75 Protein RADIALIS-like 55.8e-2160Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG
        MAS S   SS+WT+ QNK FE+ALAVYD+DTP+RW NV+KAVG K+ EEVKRHY +LVED+ +IE   VP P   T D   + RG
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG

Q9SIJ5 Protein RADIALIS-like 21.2e-2365.06Show/hide
Query:  SMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFP-YRNTSDNLPRKR
        SMSS+GS +WT  QNKAFE+ALAVYDQDTP+RW NV++AVG K  EE KR Y LLV D++ IE+GHVPFP Y+ T+ N  R R
Subjt:  SMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFP-YRNTSDNLPRKR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.1e-2260Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG
        MAS S   SS+WT+ QNK FE+ALAVYD+DTP+RW NV+KAVG K+ EEVKRHY +LVED+ +IE   VP P   T D   + RG
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRG

AT1G75250.1 RAD-like 62.3e-2059.76Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPR
        MAS S    S WT  QNK FE+ALAVYD+DTP+RW NV+KAVG K  EEVKRHY +LVED+ +IE+G VP P   T ++  R
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPR

AT1G75250.2 RAD-like 62.3e-2059.76Show/hide
Query:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPR
        MAS S    S WT  QNK FE+ALAVYD+DTP+RW NV+KAVG K  EEVKRHY +LVED+ +IE+G VP P   T ++  R
Subjt:  MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPR

AT2G21650.1 Homeodomain-like superfamily protein8.8e-2565.06Show/hide
Query:  SMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFP-YRNTSDNLPRKR
        SMSS+GS +WT  QNKAFE+ALAVYDQDTP+RW NV++AVG K  EE KR Y LLV D++ IE+GHVPFP Y+ T+ N  R R
Subjt:  SMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFP-YRNTSDNLPRKR

AT4G39250.1 RAD-like 11.5e-2468.42Show/hide
Query:  ASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS
        +SMSS  S +WTA QNKAFE+ALA YDQDTP RW NV+K VG K  EEVKRHY+LLV+D+  IE+GHVPFP   TS
Subjt:  ASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCCTCTCATGGGTCAAGTGCATGGACTGCAATGCAAAACAAGGCATTTGAAAAGGCTTTGGCAGTGTATGATCAAGACACACCTGAAAGATGGTTGAA
TGTTTCAAAGGCTGTAGGTGAGAAAAATGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAACATATTGAGTCTGGTCATGTTCCTTTTCCCTATC
GAAACACAAGCGACAATCTTCCGAGGAAAAGAGGAAAAATGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCCTCTCATGGGTCAAGTGCATGGACTGCAATGCAAAACAAGGCATTTGAAAAGGCTTTGGCAGTGTATGATCAAGACACACCTGAAAGATGGTTGAA
TGTTTCAAAGGCTGTAGGTGAGAAAAATGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATGTCAAACATATTGAGTCTGGTCATGTTCCTTTTCCCTATC
GAAACACAAGCGACAATCTTCCGAGGAAAAGAGGAAAAATGTTGTGA
Protein sequenceShow/hide protein sequence
MASMSSHGSSAWTAMQNKAFEKALAVYDQDTPERWLNVSKAVGEKNEEEVKRHYQLLVEDVKHIESGHVPFPYRNTSDNLPRKRGKML