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Sed0022368 (gene) of Chayote v1 genome

Gene IDSed0022368
OrganismSechium edule (Chayote v1)
Descriptionclassical arabinogalactan protein 26
Genome locationLG09:36165327..36165901
RNA-Seq ExpressionSed0022368
SyntenySed0022368
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575865.1 hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia]5.1e-4277.04Show/hide
Query:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP
        MAS FSLYIPIFMAYTASIL FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+FPTPGGA LPPSSLPTIPSSPSPPNPDF   A APE+  PP
Subjt:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP

Query:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR
        S SLPFSAAA LN GG  W + VALTAA VAE+CR
Subjt:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR

XP_022953817.1 classical arabinogalactan protein 26 [Cucurbita moschata]5.1e-4277.04Show/hide
Query:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP
        MAS FSLYIPIFMAYTASIL FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+FPTPGGA LPPSSLPTIPSSPSPPNPDF   A APE+  PP
Subjt:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP

Query:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR
        S SLPFSAAA LN GG  W + VALTAA VAE+CR
Subjt:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR

XP_022991733.1 classical arabinogalactan protein 26 [Cucurbita maxima]9.7e-4174.81Show/hide
Query:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP
        MAS FSLYIPIFMAYTASI  FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+FPTPGGA LPPSSLPTIPSSPSPPNPDF     APE+  PP
Subjt:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP

Query:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR
        S SLPFSAAA LN GG  W + VALTAA V E+CR
Subjt:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR

XP_023548939.1 classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]4.3e-4175.56Show/hide
Query:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP
        MAS FSLYIPIFMAYTASI  FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+FPTPGGA LPPSSLPTIPSSPSPPNPDF   A APE+  PP
Subjt:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP

Query:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR
        S SLPFSA A LN GG  W + VALTAA VAE+CR
Subjt:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR

XP_038876736.1 classical arabinogalactan protein 26-like [Benincasa hispida]2.8e-4075.18Show/hide
Query:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKP--DIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITP
        MAS FSLYIPIFMAYTASIL FS ASYPN+SP  ISSI+AAPEFSP PSP+P P  DI P+FPTPGGA LPPSSLPTIPSSPSPPNPDF   A APE++ 
Subjt:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKP--DIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITP

Query:  PPSPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR
        PPS SLPFSAA +LN  G  W VLVALT A   ELCR
Subjt:  PPSPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR

TrEMBL top hitse value%identityAlignment
A0A0A0K510 Uncharacterized protein8.6e-3572.79Show/hide
Query:  MASTFSLYIPIFMAYTASILGFSFASYPN-FSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPP
        MAS FSLYIPIFMAYTAS+  FSFASYPN F  H ISSI+AAPEFS  PSPAP  DI P+FPTPG A LPPSSLPTIPSSPSPPNPDF   A APE+   
Subjt:  MASTFSLYIPIFMAYTASILGFSFASYPN-FSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPP

Query:  PSPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR
        PS SLPFS AAALN GG    V VALT   VAEL R
Subjt:  PSPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR

A0A1S3BRG9 classical arabinogalactan protein 264.9e-3065.47Show/hide
Query:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPH----QISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEI
        MAS FSLYIPIFMAYTAS   F+FASYPN+ P       SSI+AAPEFS  P+PAP  DI P+FPTPG A LPPSSLPTIPSSPSPPNPDF   A APE+
Subjt:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPH----QISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEI

Query:  TPPPSPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR
           P+ S+PFSAAAALN  G    V +AL  A  AEL R
Subjt:  TPPPSPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR

A0A5A7UQZ3 Classical arabinogalactan protein 264.9e-3065.47Show/hide
Query:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPH----QISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEI
        MAS FSLYIPIFMAYTAS   F+FASYPN+ P       SSI+AAPEFS  P+PAP  DI P+FPTPG A LPPSSLPTIPSSPSPPNPDF   A APE+
Subjt:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPH----QISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEI

Query:  TPPPSPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR
           P+ S+PFSAAAALN  G    V +AL  A  AEL R
Subjt:  TPPPSPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR

A0A6J1GPB2 classical arabinogalactan protein 262.5e-4277.04Show/hide
Query:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP
        MAS FSLYIPIFMAYTASIL FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+FPTPGGA LPPSSLPTIPSSPSPPNPDF   A APE+  PP
Subjt:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP

Query:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR
        S SLPFSAAA LN GG  W + VALTAA VAE+CR
Subjt:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR

A0A6J1JX46 classical arabinogalactan protein 264.7e-4174.81Show/hide
Query:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP
        MAS FSLYIPIFMAYTASI  FSFASYPN  P  ISSI+AAPEFSP PSP+P  DI P+FPTPGGA LPPSSLPTIPSSPSPPNPDF     APE+  PP
Subjt:  MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPP

Query:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR
        S SLPFSAAA LN GG  W + VALTAA V E+CR
Subjt:  SPSLPFSAAAALNCGGVFWLVLVALTAAFVAELCR

SwissProt top hitse value%identityAlignment
Q94F57 Classical arabinogalactan protein 261.2e-0638.76Show/hide
Query:  IPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPE-------PSPAPKPDIFPVFPTPGGADLPPSS-----LPTIPSSPSPPNPDFTAFAAAPEI
        + +F A+T      S   + + S  Q+S+I+AAP F PE        +PA  PD  P+FPTPG +++ PS      +PTIPSS SPPNPD        E+
Subjt:  IPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPE-------PSPAPKPDIFPVFPTPGGADLPPSS-----LPTIPSSPSPPNPDFTAFAAAPEI

Query:  TPPPSPSLPFSAAAALNCGGVFWLVLVAL
        +P  SP LP S++  L    +  L+LV L
Subjt:  TPPPSPSLPFSAAAALNCGGVFWLVLVAL

Arabidopsis top hitse value%identityAlignment
AT2G47930.1 arabinogalactan protein 268.8e-0838.76Show/hide
Query:  IPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPE-------PSPAPKPDIFPVFPTPGGADLPPSS-----LPTIPSSPSPPNPDFTAFAAAPEI
        + +F A+T      S   + + S  Q+S+I+AAP F PE        +PA  PD  P+FPTPG +++ PS      +PTIPSS SPPNPD        E+
Subjt:  IPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPE-------PSPAPKPDIFPVFPTPGGADLPPSS-----LPTIPSSPSPPNPDFTAFAAAPEI

Query:  TPPPSPSLPFSAAAALNCGGVFWLVLVAL
        +P  SP LP S++  L    +  L+LV L
Subjt:  TPPPSPSLPFSAAAALNCGGVFWLVLVAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCCATTTTGGGTTTCTCTTTTGCTTCTTACCCCAATTTCTCTCCTCATCAAATTTCTTC
CATCGCCGCCGCGCCGGAGTTTTCGCCCGAGCCTTCTCCGGCGCCGAAGCCGGACATTTTCCCCGTCTTTCCGACTCCCGGCGGCGCCGACCTCCCGCCGTCATCCCTTC
CGACCATTCCCTCCAGCCCCAGCCCTCCCAACCCCGATTTCACAGCCTTTGCGGCGGCGCCGGAGATAACTCCTCCGCCGTCTCCGTCCTTGCCGTTCTCGGCTGCTGCT
GCTCTCAACTGCGGTGGGGTTTTTTGGCTCGTTTTGGTGGCGCTCACGGCGGCGTTCGTGGCGGAGCTCTGCCGGTGA
mRNA sequenceShow/hide mRNA sequence
GGGGGGGGGGATTTGTTTCTCTCTCATCATTGACAATGGCTTCCACTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCCATTTTGGGTTTCTCTTTTGCT
TCTTACCCCAATTTCTCTCCTCATCAAATTTCTTCCATCGCCGCCGCGCCGGAGTTTTCGCCCGAGCCTTCTCCGGCGCCGAAGCCGGACATTTTCCCCGTCTTTCCGAC
TCCCGGCGGCGCCGACCTCCCGCCGTCATCCCTTCCGACCATTCCCTCCAGCCCCAGCCCTCCCAACCCCGATTTCACAGCCTTTGCGGCGGCGCCGGAGATAACTCCTC
CGCCGTCTCCGTCCTTGCCGTTCTCGGCTGCTGCTGCTCTCAACTGCGGTGGGGTTTTTTGGCTCGTTTTGGTGGCGCTCACGGCGGCGTTCGTGGCGGAGCTCTGCCGG
TGACCAGTTTTCCGGCGGTGGTTTTAGTGGCCAGTGGAGTTGTGTTTGGCGCTGGTGATTGTTCTTTTACTTGTGACCTTTTTGTCAAAAATATATAATTTTAGTTTTTT
ATTTTTTATTTTCATTTTAGTTGAG
Protein sequenceShow/hide protein sequence
MASTFSLYIPIFMAYTASILGFSFASYPNFSPHQISSIAAAPEFSPEPSPAPKPDIFPVFPTPGGADLPPSSLPTIPSSPSPPNPDFTAFAAAPEITPPPSPSLPFSAAA
ALNCGGVFWLVLVALTAAFVAELCR