; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0022377 (gene) of Chayote v1 genome

Gene IDSed0022377
OrganismSechium edule (Chayote v1)
Descriptionsplicing factor, proline- and glutamine-rich
Genome locationLG13:20792584..20793605
RNA-Seq ExpressionSed0022377
SyntenySed0022377
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063295.1 uncharacterized protein E6C27_scaffold205G001180 [Cucumis melo var. makuwa]4.0e-4162.79Show/hide
Query:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV---LRPHRSLPSQPRSKPHS
        MAD YFLDR+P+ G+  T+I+N        AV G  HGG+LQTPPRF S PS H HQ + PF QQ +   PPLLPPPP     LRPHRSL SQPRS  HS
Subjt:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV---LRPHRSLPSQPRSKPHS

Query:  LKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA
        LKK K T+K+KDS   VDRR+P R+ S +A AAKRVVRVEE E+LS   F +ISPPPSSLPLPKFS+RPAKA
Subjt:  LKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA

KAG6608604.1 hypothetical protein SDJN03_01946, partial [Cucurbita argyrosperma subsp. sororia]3.6e-5071.26Show/hide
Query:  MADFYFLDRNPTAGYIPTKIS------NTAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPVLRPHRSLPSQPRSKPHSLKKP
        MAD YFLDR  T+GY PT++S      N AVYGG HGG+LQTPPRFFS PSIH HQL  PF+QQQQQ PPPLL  PPP+LRPHR+L SQPRS  HSLKK 
Subjt:  MADFYFLDRNPTAGYIPTKIS------NTAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPVLRPHRSLPSQPRSKPHSLKKP

Query:  KFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAK
        K  K+DKDS   VDRRVP R+FS + AAAKRVVRVEEF++LS  LF VISPPPSSLPLPKF LRP K
Subjt:  KFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAK

KGN60046.1 hypothetical protein Csa_001363 [Cucumis sativus]4.3e-4363.58Show/hide
Query:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV----LRPHRSLPSQPRSKPH
        MAD YFLDR+P+ G+  T+ISN        AV G  HGG+LQTPPRF S PS H HQ + PF QQ +   PPLLPPPP      +RPHRSLPSQPRS  H
Subjt:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV----LRPHRSLPSQPRSKPH

Query:  SLKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA
        SLKK K T+K+KDS   VDRR+P R+ S A A AKRVVRVEE E+LS   F VISPPPSSLPLPKFS+RPAKA
Subjt:  SLKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA

XP_008466665.1 PREDICTED: uncharacterized protein LOC103504021 [Cucumis melo]4.0e-4162.79Show/hide
Query:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV---LRPHRSLPSQPRSKPHS
        MAD YFLDR+P+ G+  T+I+N        AV G  HGG+LQTPPRF S PS H HQ + PF QQ +   PPLLPPPP     LRPHRSL SQPRS  HS
Subjt:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV---LRPHRSLPSQPRSKPHS

Query:  LKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA
        LKK K T+K+KDS   VDRR+P R+ S +A AAKRVVRVEE E+LS   F +ISPPPSSLPLPKFS+RPAKA
Subjt:  LKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA

XP_022139188.1 uncharacterized protein LOC111010153 [Momordica charantia]1.2e-3260.34Show/hide
Query:  MADFYFLDRNPTAGYIPTK---ISN----------TAVYGGGHGGILQTPPRFFSTPS-IHGHQLFHPFLQQQQQPPPPLLPPPPPVLRPHRSLPSQPRS
        MAD YFLDR P AGY  T+   ISN           A  G  HGG+L+TPPRFFS PS IHGHQ FHPF+Q Q   PPPLL  PPP+LRPHRSLPSQP +
Subjt:  MADFYFLDRNPTAGYIPTK---ISN----------TAVYGGGHGGILQTPPRFFSTPS-IHGHQLFHPFLQQQQQPPPPLLPPPPPVLRPHRSLPSQPRS

Query:  KPHSL--KKPKFTKKDKD--SPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAK
        + HSL  KK K  K+ +   SP  VDRR   R+ S  AAAAKRVV+VEE + LS  LF  +SPPPSSLPLPKF LRPAK
Subjt:  KPHSL--KKPKFTKKDKD--SPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAK

TrEMBL top hitse value%identityAlignment
A0A0A0LJ69 Uncharacterized protein2.1e-4363.58Show/hide
Query:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV----LRPHRSLPSQPRSKPH
        MAD YFLDR+P+ G+  T+ISN        AV G  HGG+LQTPPRF S PS H HQ + PF QQ +   PPLLPPPP      +RPHRSLPSQPRS  H
Subjt:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV----LRPHRSLPSQPRSKPH

Query:  SLKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA
        SLKK K T+K+KDS   VDRR+P R+ S A A AKRVVRVEE E+LS   F VISPPPSSLPLPKFS+RPAKA
Subjt:  SLKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA

A0A1S3CRS4 uncharacterized protein LOC1035040212.0e-4162.79Show/hide
Query:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV---LRPHRSLPSQPRSKPHS
        MAD YFLDR+P+ G+  T+I+N        AV G  HGG+LQTPPRF S PS H HQ + PF QQ +   PPLLPPPP     LRPHRSL SQPRS  HS
Subjt:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV---LRPHRSLPSQPRSKPHS

Query:  LKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA
        LKK K T+K+KDS   VDRR+P R+ S +A AAKRVVRVEE E+LS   F +ISPPPSSLPLPKFS+RPAKA
Subjt:  LKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA

A0A5A7VBL8 Uncharacterized protein2.0e-4162.79Show/hide
Query:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV---LRPHRSLPSQPRSKPHS
        MAD YFLDR+P+ G+  T+I+N        AV G  HGG+LQTPPRF S PS H HQ + PF QQ +   PPLLPPPP     LRPHRSL SQPRS  HS
Subjt:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV---LRPHRSLPSQPRSKPHS

Query:  LKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA
        LKK K T+K+KDS   VDRR+P R+ S +A AAKRVVRVEE E+LS   F +ISPPPSSLPLPKFS+RPAKA
Subjt:  LKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA

A0A5D3E771 Uncharacterized protein2.0e-4162.79Show/hide
Query:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV---LRPHRSLPSQPRSKPHS
        MAD YFLDR+P+ G+  T+I+N        AV G  HGG+LQTPPRF S PS H HQ + PF QQ +   PPLLPPPP     LRPHRSL SQPRS  HS
Subjt:  MADFYFLDRNPTAGYIPTKISN-------TAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPV---LRPHRSLPSQPRSKPHS

Query:  LKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA
        LKK K T+K+KDS   VDRR+P R+ S +A AAKRVVRVEE E+LS   F +ISPPPSSLPLPKFS+RPAKA
Subjt:  LKKPKFTKKDKDSPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKA

A0A6J1CF43 uncharacterized protein LOC1110101535.7e-3360.34Show/hide
Query:  MADFYFLDRNPTAGYIPTK---ISN----------TAVYGGGHGGILQTPPRFFSTPS-IHGHQLFHPFLQQQQQPPPPLLPPPPPVLRPHRSLPSQPRS
        MAD YFLDR P AGY  T+   ISN           A  G  HGG+L+TPPRFFS PS IHGHQ FHPF+Q Q   PPPLL  PPP+LRPHRSLPSQP +
Subjt:  MADFYFLDRNPTAGYIPTK---ISN----------TAVYGGGHGGILQTPPRFFSTPS-IHGHQLFHPFLQQQQQPPPPLLPPPPPVLRPHRSLPSQPRS

Query:  KPHSL--KKPKFTKKDKD--SPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAK
        + HSL  KK K  K+ +   SP  VDRR   R+ S  AAAAKRVV+VEE + LS  LF  +SPPPSSLPLPKF LRPAK
Subjt:  KPHSL--KKPKFTKKDKD--SPPAVDRRVPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATTTTTATTTTCTAGATCGAAACCCCACCGCCGGCTACATACCAACAAAAATTTCAAACACCGCCGTCTACGGCGGAGGCCACGGCGGAATTTTACAAACGCC
GCCGCGATTCTTCTCAACTCCTTCAATCCACGGCCACCAATTATTTCATCCCTTCCTCCAACAACAACAACAACCGCCGCCGCCTCTTCTTCCGCCGCCGCCGCCCGTTC
TCCGGCCCCACCGCTCACTTCCTTCTCAACCCCGATCAAAACCCCACTCTCTTAAGAAACCCAAATTCACAAAAAAAGATAAAGACTCGCCGCCGGCGGTTGATCGGCGG
GTTCCTTGTAGAAGCTTCTCCAAGGCGGCGGCGGCGGCGAAGAGGGTTGTTAGAGTTGAGGAATTTGAGAGACTGTCGATGCGTTTATTTGGGGTTATTTCTCCGCCGCC
TAGCAGCTTGCCGTTGCCCAAATTTTCTCTGAGGCCGGCGAAGGCTGAGGCTTAA
mRNA sequenceShow/hide mRNA sequence
TATAAAAGGATTATAAGGAGAATGCTAATCCAAAGCCCTGCCACACCGGGTTTCCAACTTTCTGGGTTCATCGGAAAGTTCTTGTTCATCGAAAAAATATTTTTTTTAAA
AAAATTAATTCTCTCTTTTCATATCTACATCTTGGAAAAGATTTCTTCATCTTAAAATTTCTCAACAAAATTTTCACATTTCTTCTGTTAATTACTTTTAAATACCCCAT
GGCCGATTTTTATTTTCTAGATCGAAACCCCACCGCCGGCTACATACCAACAAAAATTTCAAACACCGCCGTCTACGGCGGAGGCCACGGCGGAATTTTACAAACGCCGC
CGCGATTCTTCTCAACTCCTTCAATCCACGGCCACCAATTATTTCATCCCTTCCTCCAACAACAACAACAACCGCCGCCGCCTCTTCTTCCGCCGCCGCCGCCCGTTCTC
CGGCCCCACCGCTCACTTCCTTCTCAACCCCGATCAAAACCCCACTCTCTTAAGAAACCCAAATTCACAAAAAAAGATAAAGACTCGCCGCCGGCGGTTGATCGGCGGGT
TCCTTGTAGAAGCTTCTCCAAGGCGGCGGCGGCGGCGAAGAGGGTTGTTAGAGTTGAGGAATTTGAGAGACTGTCGATGCGTTTATTTGGGGTTATTTCTCCGCCGCCTA
GCAGCTTGCCGTTGCCCAAATTTTCTCTGAGGCCGGCGAAGGCTGAGGCTTAATTGAAAAGTTGTCGTGTCGGAGCTGACGGCGGAGCCGCCGATTTGGATGATCGCCGG
CGAGTTATTCCGTCTTCATTGAAGCTGTGTTTTTTTTTAATGTTATCAATGAATGGGTGTGTGTCAGTTTGGTTATGTTTGGTTTGTGTGTTGGAATTGGTTTTCTTCAT
GGGTTGTTTTTTTTCTTCTCTTCCATGGAAAACTGTTATGGAAATATTGAAGTTCTAAAATTATGTATAAATACTTCTTATTTCTCTCTATGATTTTCTTTTTCTTTTTG
TATTATTTTGAGTTTATGGTCTACTAACTCTG
Protein sequenceShow/hide protein sequence
MADFYFLDRNPTAGYIPTKISNTAVYGGGHGGILQTPPRFFSTPSIHGHQLFHPFLQQQQQPPPPLLPPPPPVLRPHRSLPSQPRSKPHSLKKPKFTKKDKDSPPAVDRR
VPCRSFSKAAAAAKRVVRVEEFERLSMRLFGVISPPPSSLPLPKFSLRPAKAEA