CuGenDBv2

Gene ID	Sed0022400
Organism	Sechium edule (Chayote v1)
Description	DNA polymerase delta subunit 4
Genome location	LG01:65605201..65607381
RNA-Seq Expression	Sed0022400
Synteny	Sed0022400
Gene Ontology terms	GO:0000731 - DNA synthesis involved in DNA repair (biological process) GO:0006261 - DNA-dependent DNA replication (biological process) GO:0043625 - delta DNA polymerase complex (cellular component) GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR007218 - DNA polymerase delta, subunit 4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004143634.1 uncharacterized protein LOC101209940 [Cucumis sativus]

9.2e-37

Show/hide

Query:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL
        MAS R GLK FYKQ+K+SGISKAKASKPSS K+KSPA SA             +  S+DLQDDYG SEN LR+FDMNTAYGPC+GMTRMARWERA +LGL
Subjt:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL

Query:  NPPKGIETLLKAGKVQLESLWGSRV
        NPPK I TLLKAGKVQLE LW SRV
Subjt:  NPPKGIETLLKAGKVQLESLWGSRV

XP_008467236.1 PREDICTED: DNA polymerase delta subunit 4 [Cucumis melo]

1.4e-37

72.8

Show/hide

Query:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL
        MAS R GLK FYKQ+K+SGISKAKASKPSS K+KSPA SA             +  S+DLQDDYGESENMLR+FDMN AYGPC+GMTRMARWERA +LGL
Subjt:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL

Query:  NPPKGIETLLKAGKVQLESLWGSRV
        NPPK I TLLKAGKVQLE LW SRV
Subjt:  NPPKGIETLLKAGKVQLESLWGSRV

XP_022957680.1 uncharacterized protein LOC111459143 [Cucurbita moschata]

3.6e-33

66.4

Show/hide

Query:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL
        MASAR G+K FYKQ+KNSG+S  K SKPSS K+KS A SA             +  S+DL+DDYGESEN+LR+FDMN AYGPC+GMTRM RWE AR LGL
Subjt:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL

Query:  NPPKGIETLLKAGKVQLESLWGSRV
        NPPK IETLLK GKVQLE LW SR+
Subjt:  NPPKGIETLLKAGKVQLESLWGSRV

XP_022995740.1 uncharacterized protein LOC111491182 [Cucurbita maxima]

4.7e-33

66.4

Show/hide

Query:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL
        MASAR G+K FYKQ+KNSG+S  K SKPSS K+KS A SA             +  S+DL+DDYGESEN+LR+FDMN AYGPC+GMTRM RWE AR LGL
Subjt:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL

Query:  NPPKGIETLLKAGKVQLESLWGSRV
        NPPK IETLLK GKVQLE LW SR+
Subjt:  NPPKGIETLLKAGKVQLESLWGSRV

XP_038875328.1 DNA polymerase delta subunit 4 [Benincasa hispida]

7.8e-36

72.44

Show/hide

Query:  MASAREGLKGFYKQKKNSGISKA--KASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNL
        MASAR GLK FYKQ+KNSGISKA  KASKPSS K KSPA SA             +  S+DLQDDYG  ENMLR+FDMN AYGPC+GMTRMARWERA NL
Subjt:  MASAREGLKGFYKQKKNSGISKA--KASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNL

Query:  GLNPPKGIETLLKAGKVQLESLWGSRV
        GLNPPK IETLLKA KVQLE LW SRV
Subjt:  GLNPPKGIETLLKAGKVQLESLWGSRV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KND6 Uncharacterized protein

4.5e-37

Show/hide

Query:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL
        MAS R GLK FYKQ+K+SGISKAKASKPSS K+KSPA SA             +  S+DLQDDYG SEN LR+FDMNTAYGPC+GMTRMARWERA +LGL
Subjt:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL

Query:  NPPKGIETLLKAGKVQLESLWGSRV
        NPPK I TLLKAGKVQLE LW SRV
Subjt:  NPPKGIETLLKAGKVQLESLWGSRV

A0A1S3CT23 DNA polymerase delta subunit 4

6.9e-38

72.8

Show/hide

Query:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL
        MAS R GLK FYKQ+K+SGISKAKASKPSS K+KSPA SA             +  S+DLQDDYGESENMLR+FDMN AYGPC+GMTRMARWERA +LGL
Subjt:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL

Query:  NPPKGIETLLKAGKVQLESLWGSRV
        NPPK I TLLKAGKVQLE LW SRV
Subjt:  NPPKGIETLLKAGKVQLESLWGSRV

A0A5A7UNL0 DNA polymerase delta subunit 4

6.9e-38

72.8

Show/hide

Query:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL
        MAS R GLK FYKQ+K+SGISKAKASKPSS K+KSPA SA             +  S+DLQDDYGESENMLR+FDMN AYGPC+GMTRMARWERA +LGL
Subjt:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL

Query:  NPPKGIETLLKAGKVQLESLWGSRV
        NPPK I TLLKAGKVQLE LW SRV
Subjt:  NPPKGIETLLKAGKVQLESLWGSRV

A0A6J1H180 uncharacterized protein LOC111459143

1.8e-33

66.4

Show/hide

Query:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL
        MASAR G+K FYKQ+KNSG+S  K SKPSS K+KS A SA             +  S+DL+DDYGESEN+LR+FDMN AYGPC+GMTRM RWE AR LGL
Subjt:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL

Query:  NPPKGIETLLKAGKVQLESLWGSRV
        NPPK IETLLK GKVQLE LW SR+
Subjt:  NPPKGIETLLKAGKVQLESLWGSRV

A0A6J1K4T3 uncharacterized protein LOC111491182

2.3e-33

66.4

Show/hide

Query:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL
        MASAR G+K FYKQ+KNSG+S  K SKPSS K+KS A SA             +  S+DL+DDYGESEN+LR+FDMN AYGPC+GMTRM RWE AR LGL
Subjt:  MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSA-------------ASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGL

Query:  NPPKGIETLLKAGKVQLESLWGSRV
        NPPK IETLLK GKVQLE LW SR+
Subjt:  NPPKGIETLLKAGKVQLESLWGSRV

SwissProt top hits

e value

%identity

Alignment

O59835 DNA polymerase delta subunit 4

1.8e-06

51.16

Show/hide

Query:  ENMLRKFDMNTAYGPCVGMTRMARWERARNLGLNPPKGIETLL
        E +L  FD    YGP +GMTRM RW+RA+N  LNPP+ +  +L
Subjt:  ENMLRKFDMNTAYGPCVGMTRMARWERARNLGLNPPKGIETLL

Q3T0X9 DNA polymerase delta subunit 4

7.9e-07

44.68

Show/hide

Query:  ESENMLRKFDMNTAYGPCVGMTRMARWERARNLGLNPPKGIETLLKA
        E   +LR+FD+   YGPC G+TR+ RW RA  +GL PP  +  +L++
Subjt:  ESENMLRKFDMNTAYGPCVGMTRMARWERARNLGLNPPKGIETLLKA

Q9CWP8 DNA polymerase delta subunit 4

3.5e-07

51.16

Show/hide

Query:  MLRKFDMNTAYGPCVGMTRMARWERARNLGLNPPKGIETLLKA
        +LR+FD+   YGPC G+TR+ RW RA  +GL PP  +  +LKA
Subjt:  MLRKFDMNTAYGPCVGMTRMARWERARNLGLNPPKGIETLLKA

Q9HCU8 DNA polymerase delta subunit 4

2.3e-06

43.14

Show/hide

Query:  QDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGLNPPKGIETLLK
        +D+      +LR+FD+   YGPC G+TR+ RW RA+ +GL PP  +  +LK
Subjt:  QDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGLNPPKGIETLLK

Arabidopsis top hits

e value

%identity

Alignment

AT1G09815.1 polymerase delta 4

3.9e-25

50.81

Show/hide

Query:  MASAREGLKGFYKQKKNSGISKAKASKPSSTK------------SKSPAKSAASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGLN
        MA+  + LKGFYKQ K++       SKPSS K               PA   +  SVDL +DY + E MLR+FDMN  YGPC+GMTR+ RWERA  LG+N
Subjt:  MASAREGLKGFYKQKKNSGISKAKASKPSSTK------------SKSPAKSAASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGLN

Query:  PPKGIETLLKAGKVQLESLWGSRV
        PP  IE LLK GKVQ + LW  RV
Subjt:  PPKGIETLLKAGKVQLESLWGSRV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGTCTGCTCGAGAAGGGTTGAAAGGTTTCTACAAGCAAAAGAAAAACAGTGGAATCTCCAAGGCCAAGGCTTCAAAGCCGTCTTCTACAAAAAGCAAATCTCCGGC
CAAATCTGCAGCTTCGTGCTCCGTCGATCTTCAAGATGATTATGGCGAGTCGGAGAATATGTTGAGGAAATTCGATATGAACACGGCCTATGGACCTTGTGTTGGAATGA
CCAGAATGGCACGATGGGAGCGTGCCCGTAATCTTGGTTTAAACCCTCCAAAAGGCATTGAGACACTCTTGAAGGCTGGCAAAGTGCAGTTAGAGTCCCTGTGGGGTTCC
CGAGTTTAA

mRNA sequence

Show/hide mRNA sequence

TTCAAAATTTGAAAATCGATAATGGCGTCTGCTCGAGAAGGGTTGAAAGGTTTCTACAAGCAAAAGAAAAACAGTGGAATCTCCAAGGCCAAGGCTTCAAAGCCGTCTTC
TACAAAAAGCAAATCTCCGGCCAAATCTGCAGCTTCGTGCTCCGTCGATCTTCAAGATGATTATGGCGAGTCGGAGAATATGTTGAGGAAATTCGATATGAACACGGCCT
ATGGACCTTGTGTTGGAATGACCAGAATGGCACGATGGGAGCGTGCCCGTAATCTTGGTTTAAACCCTCCAAAAGGCATTGAGACACTCTTGAAGGCTGGCAAAGTGCAG
TTAGAGTCCCTGTGGGGTTCCCGAGTTTAAAGACTACTATGCTACCTGTGTTATTTTTTTGGTTCATGTATGATGTGCATGCTACTCAGCCTCTGGCTGAAATGATGATC
AATTTTCTAATGATGTGAATGAGCTAGATTTTTTGTTCTCTAGTTTTTCACTTTTCAATTATTTGTTGCAAACATTGAATGAGTAGTTGTATGGTTAAAGAGAAACAAAG
ATCTATATCATTTGATCTGTTTTTTTGTATTCCTTAGTCCTCTTAATGAAAATATA

Protein sequence

Show/hide protein sequence

MASAREGLKGFYKQKKNSGISKAKASKPSSTKSKSPAKSAASCSVDLQDDYGESENMLRKFDMNTAYGPCVGMTRMARWERARNLGLNPPKGIETLLKAGKVQLESLWGS
RV

Sed0022400 (gene) of Chayote v1 genome