CuGenDBv2

Gene ID	Sed0022412
Organism	Sechium edule (Chayote v1)
Description	keratin, type II cytoskeletal 3 isoform X1
Genome location	LG10:33262770..33267632
RNA-Seq Expression	Sed0022412
Synteny	Sed0022412
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0003724 - RNA helicase activity (molecular function) GO:0004386 - helicase activity (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022974025.1 keratin, type II cytoskeletal 3 isoform X1 [Cucurbita maxima]

6.7e-56

72.46

Show/hide

Query:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NG+RR   EDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGPGIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR
        GDLL+G QSIF                         RDEIGAVVDEL LNT+KLI+ T+KEIDKWKR
Subjt:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR

XP_022974026.1 keratin, type II cytoskeletal 3 isoform X2 [Cucurbita maxima]

8.7e-56

72.46

Show/hide

Query:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NG+RR   EDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGPGIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR
        GDLL+G QSIF Q                        DEIGAVVDEL LNT+KLI+ T+KEIDKWKR
Subjt:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR

XP_023521208.1 ATP-dependent RNA helicase glh-2 isoform X1 [Cucurbita pepo subsp. pepo]

1.3e-56

72.46

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Query:  MPRNPNGNR---REDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NG+R   REDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGPGIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNPNGNR---REDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR
        GDLL+GHQSIF                         RDEIGA+VDEL LNT+KLIR T++EIDKWKR
Subjt:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR

XP_023521209.1 fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo]

1.8e-56

72.46

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Query:  MPRNPNGNR---REDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NG+R   REDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGPGIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNPNGNR---REDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR
        GDLL+GHQSIF Q                        DEIGA+VDEL LNT+KLIR T++EIDKWKR
Subjt:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR

XP_038889093.1 ctenidin-1 isoform X1 [Benincasa hispida]

2.3e-56

72.46

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Query:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NGNR    EDE GLLW LP+LKSS  GKLGPAFGLGVGCGVGF +GLVGGAGFGPGIPGLQLGFG+GAGCG+GLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR
        GDLLHGHQSIF Q                       +D+I A+VDELVLN+++LIRATS+EIDKWKR
Subjt:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E347 glycine-rich cell wall structural protein 1

4.7e-55

70.66

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Query:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NGNR    EDE GLLW LP+LKSS  G LGPAFGLGVGCGVGF +GLVGGAGFGPGIPGLQLGFG+GAGCG+GLGFGYGVGRGIAQDDKRRYSNV
Subjt:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR
        GD+L GHQSIF                         +D+IGA+VD+LVLNT++LIRATS+EIDKWKR
Subjt:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR

A0A6J1EY31 keratin, type II cytoskeletal 2 epidermal isoform X1

2.7e-55

71.26

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Query:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NG+R    EDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGPGIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR
        GDLL+G QSIF                         RDEIGA+VDEL LNT+KLIR T++EIDKWKR
Subjt:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR

A0A6J1F360 keratin, type II cytoskeletal 2 epidermal isoform X2

3.6e-55

71.26

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Query:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NG+R    EDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGPGIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR
        GDLL+G QSIF Q                        DEIGA+VDEL LNT+KLIR T++EIDKWKR
Subjt:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR

A0A6J1IA95 keratin, type II cytoskeletal 3 isoform X2

4.2e-56

72.46

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Query:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NG+RR   EDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGPGIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR
        GDLL+G QSIF Q                        DEIGAVVDEL LNT+KLI+ T+KEIDKWKR
Subjt:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR

A0A6J1ICW2 keratin, type II cytoskeletal 3 isoform X1

3.2e-56

72.46

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Query:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV
        MPRN NG+RR   EDESG+LWKLP+LKSS IG+LGPAFGLGVGCGVGF +GLVGGAGFGPGIPGLQLGFG+GAGCG+GLGFGYG GRGIAQDDKRRYSNV
Subjt:  MPRNPNGNRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNV

Query:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR
        GDLL+G QSIF                         RDEIGAVVDEL LNT+KLI+ T+KEIDKWKR
Subjt:  GDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G27695.1 glycine-rich protein

8.2e-04

52.83

Show/hide

Query:  LGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVG
        +G  FG GVGCG G       G GFG G+P   LG G G GCG+GLG G+G G
Subjt:  LGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVG

AT1G27695.2 glycine-rich protein

8.2e-04

52.83

Show/hide

Query:  LGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVG
        +G  FG GVGCG G       G GFG G+P   LG G G GCG+GLG G+G G
Subjt:  LGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVG

AT1G66820.1 glycine-rich protein

7.2e-08

46.15

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Query:  LKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQ-----LGFGVGAGCGIGLGFGYGVGRGIAQDD-KRRY
        +K++T+   GP  G G+GCG G  +GL GG G G    GL      LGFG+G G G G G+G+GVG G + DD K R+
Subjt:  LKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQ-----LGFGVGAGCGIGLGFGYGVGRGIAQDD-KRRY

AT4G10330.1 glycine-rich protein

2.8e-36

51.27

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Query:  NRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGH
        NRR   +D+ GLLWKLP ++   IGK+GPAFGLGVGCG GF  GL+GG GFGPG+PGLQ G G GAGCGIG+GFGYGVGRG A D  R Y NVG      
Subjt:  NRR---EDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGIAQDDKRRYSNVGDLLHGH

Query:  QSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKW
                                 P +  +E+ +++DELV++T+KL++AT+ EIDKW
Subjt:  QSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKW

Sequences

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CDS sequence

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ATGGTGAGTTTCCTCATTAAATCTTTGGATTCTTTCCGTGTAGTTACTGGTGACCAAAAGTGGAAGCAAGAGATGCCTCGAAATCCGAACGGAAACCGACGGGAAGATGA
GAGTGGATTACTGTGGAAGCTACCACTTCTCAAATCTTCCACAATCGGGAAGCTAGGTCCCGCTTTCGGTCTCGGCGTCGGTTGCGGCGTCGGCTTTGCCGTCGGCCTCG
TCGGAGGTGCTGGATTTGGTCCTGGAATTCCTGGCTTACAACTTGGCTTTGGTGTTGGTGCTGGATGTGGAATTGGCTTAGGATTTGGCTATGGCGTGGGCAGGGGCATT
GCTCAAGATGACAAACGGAGATACTCTAATGTTGGGGATCTATTACATGGTCATCAAAGTATATTTTCTCAGTTCGACCAGGGGGGTGCTACTTTATCATCAAGAAGCGT
TTCTGAATTTTCAATTTTACCTGATATCGATAGGGATGAGATTGGTGCGGTTGTTGACGAGCTTGTCCTCAATACAAGGAAGCTTATCCGAGCCACTTCAAAGGAGATCG
ACAAGTGGAAAAGATGA

mRNA sequence

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ATTTCGGCCATTATTTTTTGACTTGGATTACTTAGATTATTTGAAGAGTTATTACAAATGAAAAATTGACAAATTTATTTATGTGAGTTTTTTTTTTTTTTTTAAAGGTT
TGGCGATAATTTGTATGGTGAGTTTCCTCATTAAATCTTTGGATTCTTTCCGTGTAGTTACTGGTGACCAAAAGTGGAAGCAAGAGATGCCTCGAAATCCGAACGGAAAC
CGACGGGAAGATGAGAGTGGATTACTGTGGAAGCTACCACTTCTCAAATCTTCCACAATCGGGAAGCTAGGTCCCGCTTTCGGTCTCGGCGTCGGTTGCGGCGTCGGCTT
TGCCGTCGGCCTCGTCGGAGGTGCTGGATTTGGTCCTGGAATTCCTGGCTTACAACTTGGCTTTGGTGTTGGTGCTGGATGTGGAATTGGCTTAGGATTTGGCTATGGCG
TGGGCAGGGGCATTGCTCAAGATGACAAACGGAGATACTCTAATGTTGGGGATCTATTACATGGTCATCAAAGTATATTTTCTCAGTTCGACCAGGGGGGTGCTACTTTA
TCATCAAGAAGCGTTTCTGAATTTTCAATTTTACCTGATATCGATAGGGATGAGATTGGTGCGGTTGTTGACGAGCTTGTCCTCAATACAAGGAAGCTTATCCGAGCCAC
TTCAAAGGAGATCGACAAGTGGAAAAGATGAGATGACTTCATCTGTTTTTACTTTTTTCAAGTTCAATCCCCTCCCCCCATCATTAGAAACAACCATAATCCAAATCATA
GAAGAAAAAACATGCTGGGTGTCTATATTGTGTTATTAGTCTGTGGCTTTAAATAGCCAAATTTCATGTACAATTGTTTCCAAAGATGAGGGTTTATGCGTTGGTAGAGA
GCACCGAGTTTCTTTCAATTTTTCCTGCACTGTTTCCTGCCATAAGAAAATTTGTTTTTTGTTTTGTTTTTGGAACTTAACTAAGAATTTAAATGTTTTCTGAAGAGAAA
CAAAAAATTGTGGTAGACAAATTGAGAGAGAATATGCTTAATTTTTGTAATCCATAAATAAATAAATGAAATCCGTTTTATTTTGGGTTCTTCCACTTTTATCTTTAAAC
ATCTCAGCTTTAAAAAATAAATAGC

Protein sequence

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MVSFLIKSLDSFRVVTGDQKWKQEMPRNPNGNRREDESGLLWKLPLLKSSTIGKLGPAFGLGVGCGVGFAVGLVGGAGFGPGIPGLQLGFGVGAGCGIGLGFGYGVGRGI
AQDDKRRYSNVGDLLHGHQSIFSQFDQGGATLSSRSVSEFSILPDIDRDEIGAVVDELVLNTRKLIRATSKEIDKWKR

Sed0022412 (gene) of Chayote v1 genome