; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0022420 (gene) of Chayote v1 genome

Gene IDSed0022420
OrganismSechium edule (Chayote v1)
Descriptionprotein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
Genome locationLG06:40709700..40714117
RNA-Seq ExpressionSed0022420
SyntenySed0022420
Gene Ontology termsNA
InterPro domainsIPR021325 - Cofactor assembly of complex C subunit B, CCB2/CCB4
IPR044705 - COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032167.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.5e-4246.18Show/hide
Query:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-
        ++ +SS +    +RG P  S   V E       + K  D VRS PIYVG ISL +VLF R                           ++ + G   L I 
Subjt:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-

Query:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV---------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANL
                                     L VWKSLSEV+CC SLVVVYDGMC+FQV         GDGE EHVE SKLM+GSLY+GILKS++Q+YLANL
Subjt:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV---------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANL

Query:  S----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK
        S          LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ        KLDAT LKY NN + A  L+S+
Subjt:  S----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK

XP_022151122.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X1 [Momordica charantia]9.9e-4246.35Show/hide
Query:  SSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI---
        SSSSSSP  ++RG P  +   V +       + +  D+VRS PI+VG ISL +VLF R                           ++ + G   L I   
Subjt:  SSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI---

Query:  ---------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS--
                                   L VW+SLSEV+CC SLVVVYDGMCLFQV        GDGE EHV+ S+LM+GSLYQGI KSR+Q+YLANLS  
Subjt:  ---------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS--

Query:  --------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSKDN
                LPSNTQAVILQPLG+KGIA+IGGNTIRGFTTSDQ        KLDAT  KY NNF+ AV L+S+ N
Subjt:  --------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSKDN

XP_022956789.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita moschata]9.0e-4346.35Show/hide
Query:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-
        ++ +SS +    +RG P  S   V E       + K  D+VRS PIYVG ISL +VLF R                           ++ + G   L I 
Subjt:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-

Query:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS
                                     L VWKSLSEV+CC SLVVVYDGMC+FQV        GDGE EHVE SKLM+GSLY+GILKS++Q+YLANLS
Subjt:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS

Query:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK
                  LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ        KLDAT LKY NN + A  L+S+
Subjt:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK

XP_022984820.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita maxima]5.8e-4245.99Show/hide
Query:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-
        ++ +SS +    +RG P  S   V E       + K  D+VRS PIYVG ISL +VLF R                           ++ + G   L I 
Subjt:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-

Query:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS
                                     L VWKSLSEV+CC SLVVVYDGMC+FQV        GDGE EHVE SKLM+G LY+GILKS++Q+YLANLS
Subjt:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS

Query:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK
                  LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ        KLDAT LKY NN + A  L+S+
Subjt:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK

XP_023513804.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic [Cucurbita pepo subsp. pepo]2.2e-4145.26Show/hide
Query:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-
        ++ +SS +    +RG P  S   V E       + K  D+VRS PIYVG ISL +VLF R                           ++ + G   L I 
Subjt:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-

Query:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS
                                     L VWKSLSEV+CC SLV+VYDGMC+FQV        GDG+ EHVE  KLM+GSLY+GILKS++Q+YLANLS
Subjt:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS

Query:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK
                  LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ        KLDAT LKY NN + A  L+S+
Subjt:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK

TrEMBL top hitse value%identityAlignment
A0A0A0KQF1 Uncharacterized protein1.4e-4145.29Show/hide
Query:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-
        ++ +SSS+    +RG P  S + V +       +    D+VRS PIYVG ISL IVLF R                           ++ + G   L I 
Subjt:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-

Query:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS
                                     L VWKSLSEV+CC SLVVVYDG C+FQV        G+GE EHVE  KLM+GSLY+G+LKS++Q+YLANLS
Subjt:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS

Query:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSKDN
                  LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ        KLDAT  KY NNF+ A  L+SK N
Subjt:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSKDN

A0A6J1DBC0 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X21.5e-4046.44Show/hide
Query:  SSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI---
        SSSSSSP  ++RG P  +   V +       + +  D+VRS PI+VG ISL +VLF R                           ++ + G   L I   
Subjt:  SSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI---

Query:  ---------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS--
                                   L VW+SLSEV+CC SLVVVYDGMCLFQV        GDGE EHV+ S+LM+GSLYQGI KSR+Q+YLANLS  
Subjt:  ---------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS--

Query:  --------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAV
                LPSNTQAVILQPLG+KGIA+IGGNTIRGFTTSDQ        KLDAT  KY NNF+ AV
Subjt:  --------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAV

A0A6J1DCN6 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic isoform X14.8e-4246.35Show/hide
Query:  SSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI---
        SSSSSSP  ++RG P  +   V +       + +  D+VRS PI+VG ISL +VLF R                           ++ + G   L I   
Subjt:  SSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI---

Query:  ---------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS--
                                   L VW+SLSEV+CC SLVVVYDGMCLFQV        GDGE EHV+ S+LM+GSLYQGI KSR+Q+YLANLS  
Subjt:  ---------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS--

Query:  --------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSKDN
                LPSNTQAVILQPLG+KGIA+IGGNTIRGFTTSDQ        KLDAT  KY NNF+ AV L+S+ N
Subjt:  --------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSKDN

A0A6J1H029 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic4.4e-4346.35Show/hide
Query:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-
        ++ +SS +    +RG P  S   V E       + K  D+VRS PIYVG ISL +VLF R                           ++ + G   L I 
Subjt:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-

Query:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS
                                     L VWKSLSEV+CC SLVVVYDGMC+FQV        GDGE EHVE SKLM+GSLY+GILKS++Q+YLANLS
Subjt:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS

Query:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK
                  LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ        KLDAT LKY NN + A  L+S+
Subjt:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK

A0A6J1J9M5 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic2.8e-4245.99Show/hide
Query:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-
        ++ +SS +    +RG P  S   V E       + K  D+VRS PIYVG ISL +VLF R                           ++ + G   L I 
Subjt:  LLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI-

Query:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS
                                     L VWKSLSEV+CC SLVVVYDGMC+FQV        GDGE EHVE SKLM+G LY+GILKS++Q+YLANLS
Subjt:  -----------------------------LRVWKSLSEVSCCSSLVVVYDGMCLFQV--------GDGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS

Query:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK
                  LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ        KLDAT LKY NN + A  L+S+
Subjt:  ----------LPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQ--------KLDATQLKYLNNFETAVNLTSK

SwissProt top hitse value%identityAlignment
Q6NQK9 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic1.8e-3040.09Show/hide
Query:  IPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI------------------------------LRVW
        I K  D VRS PIYVG  SL  VLF R                           ++ + G   L I                              L  W
Subjt:  IPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI------------------------------LRVW

Query:  KSLSEVSCCSSLVVVYDGMCLFQVG-------DGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGN
        +SL   +CC SLV+VY+G+CL Q+G       D +   V+T KLM+GS+Y+G++KS++Q+YLANLS          LP+NTQAVILQPLG+KGIA+IGGN
Subjt:  KSLSEVSCCSSLVVVYDGMCLFQVG-------DGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGN

Query:  TIRGFTTSDQ--------KLDATQLKY
        TIRGFT+SDQ        KLDAT  +Y
Subjt:  TIRGFTTSDQ--------KLDATQLKY

Arabidopsis top hitse value%identityAlignment
AT1G59840.1 cofactor assembly of complex C1.3e-3140.09Show/hide
Query:  IPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI------------------------------LRVW
        I K  D VRS PIYVG  SL  VLF R                           ++ + G   L I                              L  W
Subjt:  IPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI------------------------------LRVW

Query:  KSLSEVSCCSSLVVVYDGMCLFQVG-------DGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGN
        +SL   +CC SLV+VY+G+CL Q+G       D +   V+T KLM+GS+Y+G++KS++Q+YLANLS          LP+NTQAVILQPLG+KGIA+IGGN
Subjt:  KSLSEVSCCSSLVVVYDGMCLFQVG-------DGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGN

Query:  TIRGFTTSDQ--------KLDATQLKY
        TIRGFT+SDQ        KLDAT  +Y
Subjt:  TIRGFTTSDQ--------KLDATQLKY

AT1G59840.2 cofactor assembly of complex C1.3e-3140.09Show/hide
Query:  IPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI------------------------------LRVW
        I K  D VRS PIYVG  SL  VLF R                           ++ + G   L I                              L  W
Subjt:  IPKIGDSVRSFPIYVGAISLFIVLFQRR--------------------------SHQVDGYFLLPI------------------------------LRVW

Query:  KSLSEVSCCSSLVVVYDGMCLFQVG-------DGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGN
        +SL   +CC SLV+VY+G+CL Q+G       D +   V+T KLM+GS+Y+G++KS++Q+YLANLS          LP+NTQAVILQPLG+KGIA+IGGN
Subjt:  KSLSEVSCCSSLVVVYDGMCLFQVG-------DGEVEHVETSKLMRGSLYQGILKSRSQTYLANLS----------LPSNTQAVILQPLGEKGIAIIGGN

Query:  TIRGFTTSDQ--------KLDATQLKY
        TIRGFT+SDQ        KLDAT  +Y
Subjt:  TIRGFTTSDQ--------KLDATQLKY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTAACTATTTTCTTACTTTCTTCTTCTTCTTCTTCTCCGTCACTGCAATTCCGTGGAGTTCCAATTTCATCCCTCAGTGAAGTTACAGAGCGCCGAAGCCTTCT
TCTAGGGATTCCCAAAATCGGCGATTCCGTTCGGAGTTTCCCCATTTACGTCGGAGCAATTTCTCTCTTCATCGTCCTCTTTCAACGACGATCCCACCAGGTTGATGGTT
ACTTTTTGCTGCCTATTCTTAGGGTATGGAAGTCTCTGTCAGAAGTGTCATGCTGCAGTTCTCTGGTTGTTGTTTATGATGGTATGTGTTTATTTCAAGTTGGTGATGGT
GAGGTCGAACACGTGGAAACTAGTAAATTGATGCGGGGATCGCTCTATCAAGGAATTCTCAAATCTCGAAGTCAGACCTACTTGGCCAATCTATCTCTTCCATCAAATAC
TCAGGCTGTAATTTTGCAACCACTGGGGGAGAAGGGTATCGCTATAATTGGTGGCAACACAATAAGAGGTTTCACAACCTCTGATCAGAAGCTGGATGCTACTCAGTTAA
AGTATTTGAATAATTTTGAGACAGCAGTAAATTTGACCTCGAAGGATAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTAACTATTTTCTTACTTTCTTCTTCTTCTTCTTCTCCGTCACTGCAATTCCGTGGAGTTCCAATTTCATCCCTCAGTGAAGTTACAGAGCGCCGAAGCCTTCT
TCTAGGGATTCCCAAAATCGGCGATTCCGTTCGGAGTTTCCCCATTTACGTCGGAGCAATTTCTCTCTTCATCGTCCTCTTTCAACGACGATCCCACCAGGTTGATGGTT
ACTTTTTGCTGCCTATTCTTAGGGTATGGAAGTCTCTGTCAGAAGTGTCATGCTGCAGTTCTCTGGTTGTTGTTTATGATGGTATGTGTTTATTTCAAGTTGGTGATGGT
GAGGTCGAACACGTGGAAACTAGTAAATTGATGCGGGGATCGCTCTATCAAGGAATTCTCAAATCTCGAAGTCAGACCTACTTGGCCAATCTATCTCTTCCATCAAATAC
TCAGGCTGTAATTTTGCAACCACTGGGGGAGAAGGGTATCGCTATAATTGGTGGCAACACAATAAGAGGTTTCACAACCTCTGATCAGAAGCTGGATGCTACTCAGTTAA
AGTATTTGAATAATTTTGAGACAGCAGTAAATTTGACCTCGAAGGATAACTGA
Protein sequenceShow/hide protein sequence
MKVTIFLLSSSSSSPSLQFRGVPISSLSEVTERRSLLLGIPKIGDSVRSFPIYVGAISLFIVLFQRRSHQVDGYFLLPILRVWKSLSEVSCCSSLVVVYDGMCLFQVGDG
EVEHVETSKLMRGSLYQGILKSRSQTYLANLSLPSNTQAVILQPLGEKGIAIIGGNTIRGFTTSDQKLDATQLKYLNNFETAVNLTSKDN