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Sed0022430 (gene) of Chayote v1 genome

Gene IDSed0022430
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG13:23211996..23212385
RNA-Seq ExpressionSed0022430
SyntenySed0022430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064468.1 hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa]7.6e-2758.02Show/hide
Query:  MPCTNKIHSRGRVDFSREN-----KAVASLPHH--RRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNWFGG
        M C NK HSRGRV FS EN     KA  + P+     NDDD ++ +L+  P T ARK     L KDGG EDPFLA Y +C  EDDEKN KL KN+  FGG
Subjt:  MPCTNKIHSRGRVDFSREN-----KAVASLPHH--RRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNWFGG

Query:  --LRNLFENLSCKQLTAVRDDSLISSRVSKQ
            N F NLSCKQLTAVRDDSLISS VSK+
Subjt:  --LRNLFENLSCKQLTAVRDDSLISSRVSKQ
KAE8649893.1 hypothetical protein Csa_012691 [Cucumis sativus]6.3e-1352.63Show/hide
Query:  MPCTNKIHSRGRVDFSREN-----KAVASLPHHRRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNW
        M C NK HSRGRV FS EN     KA  + PH   + DD ++ QL+  P T ARK G  KL KDGG EDPFLA Y +C  EDDEK   L    NW
Subjt:  MPCTNKIHSRGRVDFSREN-----KAVASLPHHRRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNW
KAG6591440.1 Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia]9.6e-1451.04Show/hide
Query:  MPCTNKIHSRGRVDFSREN-----KAVASLPHHRRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNWF
        M C+N+ HSRGRV FS EN     KA  + P +R  DDD  Q +LR  P TSARK G  K+ KDG  EDPFLA + +C+  +DEKN KL +N+  F
Subjt:  MPCTNKIHSRGRVDFSREN-----KAVASLPHHRRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNWF
KAG7024319.1 hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma]9.6e-1451.04Show/hide
Query:  MPCTNKIHSRGRVDFSREN-----KAVASLPHHRRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNWF
        M C+N+ HSRGRV FS EN     KA  + P +R  DDD  Q +LR  P TSARK G  K+ KDG  EDPFLA + +C+  +DEKN KL +N+  F
Subjt:  MPCTNKIHSRGRVDFSREN-----KAVASLPHHRRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNWF
TrEMBL top hitse value%identityAlignment
A0A0A0L2M9 Uncharacterized protein8.2e-2758.91Show/hide
Query:  MPCTNKIHSRGRVDFSREN-----KAVASLPHHRRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNWFGG--
        M C NK HSRGRV FS EN     KA  + PH   + DD ++ QL+  P T ARK G  KL KDGG EDPFLA Y +C  EDDEK  KL KN++ FGG  
Subjt:  MPCTNKIHSRGRVDFSREN-----KAVASLPHHRRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNWFGG--

Query:  LRNLFENLSCKQLTAVRDDSLISSRVSKQ
          N F NLSCKQLTAVRDDSLISS  SK+
Subjt:  LRNLFENLSCKQLTAVRDDSLISSRVSKQ
A0A5A7VA56 Uncharacterized protein3.7e-2758.02Show/hide
Query:  MPCTNKIHSRGRVDFSREN-----KAVASLPHH--RRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNWFGG
        M C NK HSRGRV FS EN     KA  + P+     NDDD ++ +L+  P T ARK     L KDGG EDPFLA Y +C  EDDEKN KL KN+  FGG
Subjt:  MPCTNKIHSRGRVDFSREN-----KAVASLPHH--RRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNWFGG

Query:  --LRNLFENLSCKQLTAVRDDSLISSRVSKQ
            N F NLSCKQLTAVRDDSLISS VSK+
Subjt:  --LRNLFENLSCKQLTAVRDDSLISSRVSKQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTGCACCAACAAAATCCATTCAAGAGGCAGAGTAGATTTTTCAAGGGAGAACAAAGCAGTGGCGTCGCTGCCACATCACCGCCGCAACGACGACGATTCGGTGCA
GAATCAGCTTCGGTCGATGCCGCGTACTTCGGCGAGAAAAGCGGGCTATGTAAAGCTTATGAAAGATGGGGGAGTCGAAGACCCTTTTCTTGCGGTGTACGGAGATTGCG
CCATTGAAGATGACGAGAAGAATTACAAGTTGCATAAGAACAGAAATTGGTTTGGAGGGTTGAGGAACTTGTTTGAAAATTTGTCTTGCAAACAGTTGACCGCGGTTAGA
GATGACAGTTTGATTAGTTCTCGTGTTTCTAAACAACTGCTCTCAATAATTGAGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCTGCACCAACAAAATCCATTCAAGAGGCAGAGTAGATTTTTCAAGGGAGAACAAAGCAGTGGCGTCGCTGCCACATCACCGCCGCAACGACGACGATTCGGTGCA
GAATCAGCTTCGGTCGATGCCGCGTACTTCGGCGAGAAAAGCGGGCTATGTAAAGCTTATGAAAGATGGGGGAGTCGAAGACCCTTTTCTTGCGGTGTACGGAGATTGCG
CCATTGAAGATGACGAGAAGAATTACAAGTTGCATAAGAACAGAAATTGGTTTGGAGGGTTGAGGAACTTGTTTGAAAATTTGTCTTGCAAACAGTTGACCGCGGTTAGA
GATGACAGTTTGATTAGTTCTCGTGTTTCTAAACAACTGCTCTCAATAATTGAGAACTAA
Protein sequenceShow/hide protein sequence
MPCTNKIHSRGRVDFSRENKAVASLPHHRRNDDDSVQNQLRSMPRTSARKAGYVKLMKDGGVEDPFLAVYGDCAIEDDEKNYKLHKNRNWFGGLRNLFENLSCKQLTAVR
DDSLISSRVSKQLLSIIEN