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Sed0022461 (gene) of Chayote v1 genome

Gene IDSed0022461
OrganismSechium edule (Chayote v1)
DescriptionTransmembrane protein
Genome locationLG01:13900247..13901064
RNA-Seq ExpressionSed0022461
SyntenySed0022461
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583852.1 hypothetical protein SDJN03_19784, partial [Cucurbita argyrosperma subsp. sororia]2.7e-4775.51Show/hide
Query:  AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAA---DGGGDHIRGALLVAS
        AAVYC +A  FLAG SN+RDLRPSEHGLE+QNP    NSSP MQSFF+GNSW SS+VALPKA+NTSLP  WWNRS   RS A    GGGDHIRGALLVAS
Subjt:  AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAA---DGGGDHIRGALLVAS

Query:  LVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK
        LVCGVIGVSLLIASAFIY FKFRKQ   + SSSS+S SET NII NK
Subjt:  LVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK

XP_022954449.1 uncharacterized protein LOC111456713 [Cucurbita moschata]3.5e-4772.08Show/hide
Query:  MAIPSSHIP-AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNP--TGNSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAADGGGDHIR
        MAIPS     AAVYC LAA F  G SN+RDLRPSEHGLE+QNP  TGNSS  MQSFF+GNSW SSEV LPKA+NTSLP  WWNRS  +RS A  GGDHIR
Subjt:  MAIPSSHIP-AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNP--TGNSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAADGGGDHIR

Query:  GALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK
        GAL+V SLVCG+IG SLLIASAFIYFFKF+KQ+ R  S SS+S SETA+II +K
Subjt:  GALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK

XP_023000949.1 uncharacterized protein LOC111495232 [Cucurbita maxima]1.6e-4776.87Show/hide
Query:  AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRS--AADGG-GDHIRGALLVAS
        AA+YC LA  FLAG SN+RDLRPSEHGLE+QNP    NSSP MQSFF+GNSW SS+VALPKA+NTSLP  WWNRS   RS  AADGG GDHIRGALLVAS
Subjt:  AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRS--AADGG-GDHIRGALLVAS

Query:  LVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK
        LVCGVIGVSLLIASAFIY FKFRKQ   + SSSS+S SET NII NK
Subjt:  LVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK

XP_023519911.1 uncharacterized protein LOC111783236 [Cucurbita pepo subsp. pepo]1.6e-4775.51Show/hide
Query:  AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAA---DGGGDHIRGALLVAS
        AA+YC LA  FLAG SN+RDLRPSEHGLE+QNP    NSSP MQSFF+GNSW SS+VALPKA+NTSLP  WWNRS   RS A    GGGDHIRGALLVAS
Subjt:  AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAA---DGGGDHIRGALLVAS

Query:  LVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK
        LVCGVIGVSLLIASAFIY FKFRKQ   + SSSS+S SET NII NK
Subjt:  LVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK

XP_038895122.1 uncharacterized protein LOC120083432 [Benincasa hispida]1.6e-4772.15Show/hide
Query:  MAIPSSHIP--AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAA---DGGG
        MA   S IP  AAV+  LA   LAG+SN+RDLRPSEHGLE+QNP    NSSP MQSFF+GNSW SS+VALPKA+NTSLP  WWNRS  +RS A    GGG
Subjt:  MAIPSSHIP--AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAA---DGGG

Query:  DHIRGALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK
        DHIRGALLVASLVCG+IG+SLLIASAFIYFFKFRKQ   S SSSS+S SET NII NK
Subjt:  DHIRGALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK

TrEMBL top hitse value%identityAlignment
A0A1S3BC63 uncharacterized protein LOC1034883248.4e-4770.89Show/hide
Query:  MAIPSSHIP--AAVYCLLA--ASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAAD-GGG
        MAI  S IP  A +Y  LA     LA +SN+RDLRPSEHGL++QNP    NSSP MQSFF+GNSW +S+VALPKA+NTSLP  WWNRS  +RS A   GG
Subjt:  MAIPSSHIP--AAVYCLLA--ASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAAD-GGG

Query:  DHIRGALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK
        DHIRGALLVASLVCG+IGVSLL+ASAFIYFFKFRKQS  SSSSSS+S SET NII NK
Subjt:  DHIRGALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK

A0A5D3C2L6 Uncharacterized protein8.4e-4770.89Show/hide
Query:  MAIPSSHIP--AAVYCLLA--ASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAAD-GGG
        MAI  S IP  A +Y  LA     LA +SN+RDLRPSEHGL++QNP    NSSP MQSFF+GNSW +S+VALPKA+NTSLP  WWNRS  +RS A   GG
Subjt:  MAIPSSHIP--AAVYCLLA--ASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAAD-GGG

Query:  DHIRGALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK
        DHIRGALLVASLVCG+IGVSLL+ASAFIYFFKFRKQS  SSSSSS+S SET NII NK
Subjt:  DHIRGALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK

A0A6J1EH69 uncharacterized protein LOC1114342711.7e-4774.83Show/hide
Query:  AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAA---DGGGDHIRGALLVAS
        AA+YC +A  FLAG SN+RDLRPSEHGLE+QNP    NSSP MQSFF+GNSW SS+VALPKA+NTSLP  WWNRS   RS A    GGGDHIRGALLVAS
Subjt:  AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAA---DGGGDHIRGALLVAS

Query:  LVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK
        LVCGVIGVSLLIASAFIY FKFRKQ   + SSSS+S SET NII NK
Subjt:  LVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK

A0A6J1GT11 uncharacterized protein LOC1114567131.7e-4772.08Show/hide
Query:  MAIPSSHIP-AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNP--TGNSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAADGGGDHIR
        MAIPS     AAVYC LAA F  G SN+RDLRPSEHGLE+QNP  TGNSS  MQSFF+GNSW SSEV LPKA+NTSLP  WWNRS  +RS A  GGDHIR
Subjt:  MAIPSSHIP-AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNP--TGNSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAADGGGDHIR

Query:  GALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK
        GAL+V SLVCG+IG SLLIASAFIYFFKF+KQ+ R  S SS+S SETA+II +K
Subjt:  GALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK

A0A6J1KLE3 uncharacterized protein LOC1114952327.6e-4876.87Show/hide
Query:  AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRS--AADGG-GDHIRGALLVAS
        AA+YC LA  FLAG SN+RDLRPSEHGLE+QNP    NSSP MQSFF+GNSW SS+VALPKA+NTSLP  WWNRS   RS  AADGG GDHIRGALLVAS
Subjt:  AAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTG--NSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRS--AADGG-GDHIRGALLVAS

Query:  LVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK
        LVCGVIGVSLLIASAFIY FKFRKQ   + SSSS+S SET NII NK
Subjt:  LVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30515.1 unknown protein1.5e-0839.82Show/hide
Query:  VSNSRDLRPSEHGLEFQNPTGNSSPGMQSFF--------RGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAADGGGDHIRGALLVASLVCGVIGVSLL
        + N+R+LRPS+HGLE+    G SS  M SFF           S PSS + LP A+ +    P    S++     D   +H+   L+V SLVCG+ GV+L+
Subjt:  VSNSRDLRPSEHGLEFQNPTGNSSPGMQSFF--------RGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAADGGGDHIRGALLVASLVCGVIGVSLL

Query:  IASAFIYFFKFRK
        +ASA IYF  + K
Subjt:  IASAFIYFFKFRK

AT4G21740.1 unknown protein7.3e-1135.85Show/hide
Query:  SSHIPAAVYCLLAASFLAGVSNSRDLRPSEHGLEFQ---NPT-GNSSPGMQSFFRGNSW-----PSSEVALPK--AINTSLPQPWWNRSREHRSAADGGG
        SS +P  +  L+      G S + +LRPS+HGL++Q    PT  +S PG    F G+S      PS    LPK  A +      WW          DG G
Subjt:  SSHIPAAVYCLLAASFLAGVSNSRDLRPSEHGLEFQ---NPT-GNSSPGMQSFFRGNSW-----PSSEVALPK--AINTSLPQPWWNRSREHRSAADGGG

Query:  ---DHI-RGALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANII
           DH+ R   L AS++CGV GV+LL+    IYFF++RK     + S+S +G+++  II
Subjt:  ---DHI-RGALLVASLVCGVIGVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATTCCATCCTCTCACATTCCGGCAGCCGTCTACTGCCTCCTGGCCGCCAGTTTCCTCGCCGGAGTCTCCAATTCCAGGGACCTCCGTCCATCGGAGCACGGCCT
GGAGTTCCAAAACCCTACCGGAAACTCCTCGCCGGGAATGCAATCGTTCTTCAGAGGAAACTCCTGGCCTTCCTCTGAGGTCGCGCTTCCGAAGGCGATCAACACCAGCC
TGCCGCAGCCGTGGTGGAATCGCAGCCGCGAACACCGCTCCGCCGCCGACGGTGGCGGAGATCACATTCGCGGCGCATTGCTTGTGGCGAGTTTGGTATGTGGAGTTATA
GGCGTTTCCTTGCTGATTGCTTCTGCTTTTATTTACTTCTTTAAGTTTAGGAAGCAGAGTTGTAGATCGTCGTCGTCGTCGTCGATCTCCGGCTCGGAAACTGCTAACAT
TATTGATAACAAGTGA
mRNA sequenceShow/hide mRNA sequence
CACAAAACGCAAACCACTGTAAATCCATTCCACGAAATGGCAATTCCATCCTCTCACATTCCGGCAGCCGTCTACTGCCTCCTGGCCGCCAGTTTCCTCGCCGGAGTCTC
CAATTCCAGGGACCTCCGTCCATCGGAGCACGGCCTGGAGTTCCAAAACCCTACCGGAAACTCCTCGCCGGGAATGCAATCGTTCTTCAGAGGAAACTCCTGGCCTTCCT
CTGAGGTCGCGCTTCCGAAGGCGATCAACACCAGCCTGCCGCAGCCGTGGTGGAATCGCAGCCGCGAACACCGCTCCGCCGCCGACGGTGGCGGAGATCACATTCGCGGC
GCATTGCTTGTGGCGAGTTTGGTATGTGGAGTTATAGGCGTTTCCTTGCTGATTGCTTCTGCTTTTATTTACTTCTTTAAGTTTAGGAAGCAGAGTTGTAGATCGTCGTC
GTCGTCGTCGATCTCCGGCTCGGAAACTGCTAACATTATTGATAACAAGTGATTTTGAAAGGCGGATTTGCATGTACATAGCTCTGAGATCTGGTCGCTGATCTTATTTT
TGTAAGAGATTCATCTCTTTTTTTTCTTCTTTTTTCCTTTGATTTTTCTTCTGATGTGTTTGAATTGAGTTCCTGTAGTACTGAAACTTTAGATCTTCAGATATTCTAAT
ACATGATTGCCAATTTCAGATTCATACACAGTTCATCTTGTTGCGAGATTTTAATTTTATTTATTCAAATAATGAGTAATTTAATTGTTCTGATCCACTGTTAAATTATT
AGACTGTAGATTTTTTTTTTTTGAATTCAACTATAATTAATGTGGGAC
Protein sequenceShow/hide protein sequence
MAIPSSHIPAAVYCLLAASFLAGVSNSRDLRPSEHGLEFQNPTGNSSPGMQSFFRGNSWPSSEVALPKAINTSLPQPWWNRSREHRSAADGGGDHIRGALLVASLVCGVI
GVSLLIASAFIYFFKFRKQSCRSSSSSSISGSETANIIDNK