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Sed0022473 (gene) of Chayote v1 genome

Gene IDSed0022473
OrganismSechium edule (Chayote v1)
DescriptionTropomyosin
Genome locationLG01:6238313..6238633
RNA-Seq ExpressionSed0022473
SyntenySed0022473
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061866.1 tropomyosin [Cucumis melo var. makuwa]8.4e-2474.04Show/hide
Query:  SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGG
        SSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR G+KEGKHSS SD SG+GN+GDA  +SA AVAAVAV AV +DA +DDGGS    H HG EGGSGG
Subjt:  SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGG

Query:  GGGD
         GGD
Subjt:  GGGD

KAG6605437.1 hypothetical protein SDJN03_02754, partial [Cucurbita argyrosperma subsp. sororia]6.5e-2477.98Show/hide
Query:  MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSA-PAVAAVAVAA----VAVDASEDDGGSAHGHHSHG
        MESSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR  AK GKHS SSD SG GNTGDANESSA  AVAAVAVAA    VAVDA EDDGGS+HG   HG
Subjt:  MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSA-PAVAAVAVAA----VAVDASEDDGGSAHGHHSHG

Query:  VEGGSGGGG
         EGG GGGG
Subjt:  VEGGSGGGG

KAG7010529.1 hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-2174.53Show/hide
Query:  MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANES-SAPAVAAVAVAAVAVDA-SEDDGGSAHGHHSHGVEG
        MESSKICFCIPRHKNS K +GGSEKSSKSK S RKS  GAKEGKHSSSSD SG+GNTGDA+ + SA AVAA+AV AV +DA  EDDGGS    H HG EG
Subjt:  MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANES-SAPAVAAVAVAAVAVDA-SEDDGGSAHGHHSHGVEG

Query:  GSGGGG
        G GGGG
Subjt:  GSGGGG

KAG7035385.1 hypothetical protein SDJN02_02181 [Cucurbita argyrosperma subsp. argyrosperma]6.5e-2477.98Show/hide
Query:  MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSA-PAVAAVAVAA----VAVDASEDDGGSAHGHHSHG
        MESSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR  AK GKHS SSD SG GNTGDANESSA  AVAAVAVAA    VAVDA EDDGGS+HG   HG
Subjt:  MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSA-PAVAAVAVAA----VAVDASEDDGGSAHGHHSHG

Query:  VEGGSGGGG
         EGG GGGG
Subjt:  VEGGSGGGG

TYK15390.1 tropomyosin [Cucumis melo var. makuwa]8.4e-2474.04Show/hide
Query:  SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGG
        SSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR G+KEGKHSS SD SG+GN+GDA  +SA AVAAVAV AV +DA +DDGGS    H HG EGGSGG
Subjt:  SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGG

Query:  GGGD
         GGD
Subjt:  GGGD

TrEMBL top hitse value%identityAlignment
A0A0A0KFD0 Uncharacterized protein1.2e-2070.59Show/hide
Query:  SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGG
        SSKICFCIPRHKN  KA+GGSEKSSKSK S RKS   +KEGKHSSSSD SG+GN G+   +SA AVAAVAV AV +DA +DDGGS    H HG EGGSG 
Subjt:  SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGG

Query:  GG
        GG
Subjt:  GG

A0A5A7V5U9 Tropomyosin4.1e-2474.04Show/hide
Query:  SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGG
        SSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR G+KEGKHSS SD SG+GN+GDA  +SA AVAAVAV AV +DA +DDGGS    H HG EGGSGG
Subjt:  SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGG

Query:  GGGD
         GGD
Subjt:  GGGD

A0A5D3CVK1 Tropomyosin4.1e-2474.04Show/hide
Query:  SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGG
        SSKICFCIPRHKN  KA+GGSEKSSKSK S RKSR G+KEGKHSS SD SG+GN+GDA  +SA AVAAVAV AV +DA +DDGGS    H HG EGGSGG
Subjt:  SSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGG

Query:  GGGD
         GGD
Subjt:  GGGD

A0A6J1D515 circumsporozoite protein-like1.5e-1862.5Show/hide
Query:  MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNT------GDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSH
        MES+KICFCIPRHKN  KANGGSEKSSKSK S RKSR G K GKHSSSSD SG GNT      G  ++++  AV  +   A  +DA EDDGGSAHGH   
Subjt:  MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNT------GDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSH

Query:  GVEGGSGGGGGD
           GG  GGGGD
Subjt:  GVEGGSGGGGGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAATAGCGAAAAAGCTAATGGAGGATCAGAAAAATCTTCTAAATCCAAGCGTTCCTGCCGAAAATCTCG
CCATGGTGCAAAAGAAGGTAAGCATTCCTCTAGTAGTGATGGTAGTGGACATGGAAACACTGGTGATGCAAATGAAAGTAGTGCCCCCGCGGTGGCTGCTGTCGCGGTCG
CGGCAGTGGCTGTGGATGCATCTGAAGATGATGGTGGCAGCGCCCATGGCCACCACAGCCATGGCGTTGAGGGAGGCAGCGGAGGTGGTGGCGGAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCATAAAAATAGCGAAAAAGCTAATGGAGGATCAGAAAAATCTTCTAAATCCAAGCGTTCCTGCCGAAAATCTCG
CCATGGTGCAAAAGAAGGTAAGCATTCCTCTAGTAGTGATGGTAGTGGACATGGAAACACTGGTGATGCAAATGAAAGTAGTGCCCCCGCGGTGGCTGCTGTCGCGGTCG
CGGCAGTGGCTGTGGATGCATCTGAAGATGATGGTGGCAGCGCCCATGGCCACCACAGCCATGGCGTTGAGGGAGGCAGCGGAGGTGGTGGCGGAGATTAG
Protein sequenceShow/hide protein sequence
MESSKICFCIPRHKNSEKANGGSEKSSKSKRSCRKSRHGAKEGKHSSSSDGSGHGNTGDANESSAPAVAAVAVAAVAVDASEDDGGSAHGHHSHGVEGGSGGGGGD