CuGenDBv2

Gene ID	Sed0022514
Organism	Sechium edule (Chayote v1)
Description	Ribosomal protein
Genome location	LG04:31322050..31327812
RNA-Seq Expression	Sed0022514
Synteny	Sed0022514
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6596891.1 hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-59

81.7

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLL+KPHV++EALLDLVARVGKHV RRNGV+TD+KSFGVVQLGYG+KKLDGRY+QGQLMQMTMMATPNMNKE+HYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMM--DDEDEEDDDD--DCEEYEVEQEEKKAE
        YGLEFLSED+ + ELNKF  +NM+  DD DEEDDDD  D EEY+VEQEE+  E
Subjt:  YGLEFLSEDNERGELNKFSSYNMM--DDEDEEDDDD--DCEEYEVEQEEKKAE

XP_022143220.1 uncharacterized protein LOC111013137 [Momordica charantia]

2.3e-59

82.24

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLL+KPHVK+EALLDLVARVGKHV RRNGV+TD+KSFGVVQLGYG+KKLDGR+YQGQLMQMTMMATPNMNKE+HYLNKEDR+LRWLLVKHRD K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMM--DDEDEEDDDDD-CEEYEVEQEEKKAE
        YGLEFLSED+ +GEL+KF    +M  DD DEEDDDDD  EEY+VEQEE K E
Subjt:  YGLEFLSEDNERGELNKFSSYNMM--DDEDEEDDDDD-CEEYEVEQEEKKAE

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

3.9e-59

79.08

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLL+KPHV++EALLDLVARVGKHV RRNGV+TD+KSFGVVQLGYG+KKLDGRY+QGQLMQMTMMATPNMNKE+HYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMMDDED----EEDDDDDCEEYEVEQEEKKAE
        YGLEFLSED+ + ELNKF  + M+ D+D    ++DDDDD EEY+VEQEE+  E
Subjt:  YGLEFLSEDNERGELNKFSSYNMMDDED----EEDDDDDCEEYEVEQEEKKAE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

7.9e-60

79.74

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLL+KPHV++EALLDLVARVGKHV RRNGV+TD+KSFGVVQLGYG+KKLDGRY+QGQLMQMTMMATPNMNKE+HYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMMDDED----EEDDDDDCEEYEVEQEEKKAE
        YGLEFLSED+ + ELNKF  +NM+ D+D    ++DDDDD EEY+VEQEE+  E
Subjt:  YGLEFLSEDNERGELNKFSSYNMMDDED----EEDDDDDCEEYEVEQEEKKAE

XP_030954732.1 uncharacterized protein LOC115977176 [Quercus lobata]

3.3e-58

79.19

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLLLKPHVK+EAL++LVAR+GKHV RRNGV+ D+KSFG+VQLGYG+KKLDGRYYQGQLMQMTMMATPN+NKE+HYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMMDDE--DEEDDDDDCEEYEVEQEEKK
        YGLEFLSED+ +GEL+KF+  ++ DD+  DE+DDDDD +EY+V+QEEKK
Subjt:  YGLEFLSEDNERGELNKFSSYNMMDDE--DEEDDDDDCEEYEVEQEEKK

TrEMBL top hits

e value

%identity

Alignment

A0A5N6RXR6 Uncharacterized protein

2.7e-58

79.59

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLLLKPHVK+EAL+DLVARVGKHV RRNGV+TD+KSFGVVQLGYG+KKLDGRYYQGQLMQMTMMATPN+NKE+HYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMMDDEDEEDDDDDCEEYEVEQEEKK
        YGLEF+SED+ +GEL+K S  ++ D+  +EDD+DD +EYEV+QE  K
Subjt:  YGLEFLSEDNERGELNKFSSYNMMDDEDEEDDDDDCEEYEVEQEEKK

A0A6J1CN79 uncharacterized protein LOC111013137

1.1e-59

82.24

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLL+KPHVK+EALLDLVARVGKHV RRNGV+TD+KSFGVVQLGYG+KKLDGR+YQGQLMQMTMMATPNMNKE+HYLNKEDR+LRWLLVKHRD K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMM--DDEDEEDDDDD-CEEYEVEQEEKKAE
        YGLEFLSED+ +GEL+KF    +M  DD DEEDDDDD  EEY+VEQEE K E
Subjt:  YGLEFLSEDNERGELNKFSSYNMM--DDEDEEDDDDD-CEEYEVEQEEKKAE

A0A6J1FEF6 uncharacterized protein LOC111443208

1.9e-59

79.08

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLL+KPHV++EALLDLVARVGKHV RRNGV+TD+KSFGVVQLGYG+KKLDGRY+QGQLMQMTMMATPNMNKE+HYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMMDDED----EEDDDDDCEEYEVEQEEKKAE
        YGLEFLSED+ + ELNKF  + M+ D+D    ++DDDDD EEY+VEQEE+  E
Subjt:  YGLEFLSEDNERGELNKFSSYNMMDDED----EEDDDDDCEEYEVEQEEKKAE

A0A6J1KXT7 uncharacterized protein LOC111498530

1.4e-57

77.85

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLL+KPHV++EALLDLVARVGKHV RRNGV+TDVKSFGVVQLGYG+KKLDGRY+QGQLMQMTMMATPNMNKE+HYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMMDDEDEEDDDDDCEEYEVEQEEKKAE
        YGLEFLSED+ + ELNKF  ++M+ D+D +++DDD ++ +VEQE ++ E
Subjt:  YGLEFLSEDNERGELNKFSSYNMMDDEDEEDDDDDCEEYEVEQEEKKAE

A0A7N2L1D1 Uncharacterized protein

1.6e-58

79.19

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLLLKPHVK+EAL++LVAR+GKHV RRNGV+ D+KSFG+VQLGYG+KKLDGRYYQGQLMQMTMMATPN+NKE+HYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMMDDE--DEEDDDDDCEEYEVEQEEKK
        YGLEFLSED+ +GEL+KF+  ++ DD+  DE+DDDDD +EY+V+QEEKK
Subjt:  YGLEFLSEDNERGELNKFSSYNMMDDE--DEEDDDDDCEEYEVEQEEKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

9.3e-43

61.48

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLL KP +++E L+DLVAR+GKHV  RNGV+T++KSFG V+LGYG++KLDGR+YQGQLMQ+TMM TPNMNKE+HYLNKED+LLRWLLVKHRD+K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMMDDEDEEDDDDD
         G     +++     N+ +S ++ D    ++DD++
Subjt:  YGLEFLSEDNERGELNKFSSYNMMDDEDEEDDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

4.1e-38

57.78

Show/hide

Query:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK
        MPLYDCMLL KP +++E L+DLVAR+GKHV  RNGV+T++KSFG V+LGYG++KLDGR+Y     Q+TMM TPNMNKE+HYLNKED+LLRWLLVKHRD+K
Subjt:  MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMK

Query:  YGLEFLSEDNERGELNKFSSYNMMDDEDEEDDDDD
         G     +++     N+ +S ++ D    ++DD++
Subjt:  YGLEFLSEDNERGELNKFSSYNMMDDEDEEDDDDD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCTCTCTACGATTGTATGCTTTTGTTGAAACCCCATGTGAAGCGGGAAGCACTGCTGGACTTGGTTGCTAGAGTTGGCAAGCATGTGTTGAGAAGAAATGGCGTTAT
CACTGATGTTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGCGTTAAGAAGCTTGATGGAAGATATTACCAGGGCCAACTTATGCAGATGACAATGATGGCTACTCCCA
ACATGAACAAGGAGATGCATTACTTGAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGACATGAAATATGGCTTGGAATTCCTTAGCGAAGATAAT
GAAAGGGGCGAACTCAACAAATTTTCTAGTTATAACATGATGGATGACGAAGATGAAGAAGACGATGACGATGACTGTGAAGAATACGAGGTGGAACAAGAAGAGAAGAA
AGCAGAGTGA

mRNA sequence

Show/hide mRNA sequence

TTAAACCCCATATATGCAGTCCTCATCGACTGGCCTCAATTTCACGAAAGCCAGTGTTGTGAAATCGACAGCGGCGCCATTTCTATCGGCAGTCAGTTGAAATTCAGCCC
AACAGAAGATCCATCAAGATGCCTCTCTACGATTGTATGCTTTTGTTGAAACCCCATGTGAAGCGGGAAGCACTGCTGGACTTGGTTGCTAGAGTTGGCAAGCATGTGTT
GAGAAGAAATGGCGTTATCACTGATGTTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGCGTTAAGAAGCTTGATGGAAGATATTACCAGGGCCAACTTATGCAGATGA
CAATGATGGCTACTCCCAACATGAACAAGGAGATGCATTACTTGAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGACATGAAATATGGCTTGGAA
TTCCTTAGCGAAGATAATGAAAGGGGCGAACTCAACAAATTTTCTAGTTATAACATGATGGATGACGAAGATGAAGAAGACGATGACGATGACTGTGAAGAATACGAGGT
GGAACAAGAAGAGAAGAAAGCAGAGTGAATTTTGCTTGTATCTTAGTTGGAACTTGTTGAATGACCTTTGGTACCATTCTTGGGATTCTAGACAGACAAATAAAGAGGTC
CATAGTTTCTTTAGTTGTCCATATCATCATCTGGTTTTCAGGAACAAAGATCCATAATAGTCTTTTTCTTGTATTTCCATTAAGATGAGATATTTGGGGATGTTTTCCAG
GTCTTGGGTTCAAGCCACTTGATGAAAACTGTACGAAATGGAAATCCTTGTCTTTAAAACTTTTCTTTTTCGTTTAGTATTGTTTTTAAAGCTGGTGTAATATCTTGCTT
CTAGTAACATATTATGGAATGAACTGGAACAAATGTTGGTTTTACTAGAAAAGATCTGCTTCAGATTAAACTTCTGTTTCAAGTAA

Protein sequence

Show/hide protein sequence

MPLYDCMLLLKPHVKREALLDLVARVGKHVLRRNGVITDVKSFGVVQLGYGVKKLDGRYYQGQLMQMTMMATPNMNKEMHYLNKEDRLLRWLLVKHRDMKYGLEFLSEDN
ERGELNKFSSYNMMDDEDEEDDDDDCEEYEVEQEEKKAE

Sed0022514 (gene) of Chayote v1 genome