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Sed0022536 (gene) of Chayote v1 genome

Gene IDSed0022536
OrganismSechium edule (Chayote v1)
Descriptionprotein CURVATURE THYLAKOID 1D, chloroplastic-like
Genome locationLG07:18288303..18290176
RNA-Seq ExpressionSed0022536
SyntenySed0022536
Gene Ontology termsGO:0009579 - thylakoid (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR025564 - Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain
IPR033344 - Protein CURVATURE THYLAKOID 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577314.1 Protein CURVATURE THYLAKOID 1D, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.8e-4157.63Show/hide
Query:  LLGNPLLRPRTAIPSPSARTSSS-----FRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL
        L GNP LRPR A+P   A  S S     FR   FS SL RAAASDDS+GY P   E+ D   +LE+              +EP++  Q QAF L+     
Subjt:  LLGNPLLRPRTAIPSPSARTSSS-----FRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL

Query:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        ESVD Y++ LYGSGAF G+WLVSAIVGA+DS+P+VPK LEVVGLGYTVWFTAR+LL KESR+ELAAKIDE+K QV+G
Subjt:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

XP_011653358.1 protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus]7.0e-4149.1Show/hide
Query:  LLGNPLLRPRTAIP-----SPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLE-------------------------------EPIQ
        L GNP LRPR A+P     S +  TS   R  HF+ SL RAAASD+S+G S  F E+ D+V+VLE                               EP++
Subjt:  LLGNPLLRPRTAIP-----SPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLE-------------------------------EPIQ

Query:  -------------------------QEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFL
                                 ++PL+  Q QAF+   D  LESVD YS+ALYG+GAFFGIWLVSAIVGAVDS+PLVPK LEVVGLGY+VWFTAR+L
Subjt:  -------------------------QEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFL

Query:  LFKESREELAAKIDEVKKQVIG
        LFKESR+ELAA+IDE+K+QV+G
Subjt:  LFKESREELAAKIDEVKKQVIG

XP_022929179.1 protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita moschata]9.2e-4157.06Show/hide
Query:  LLGNPLLRPRTAIPSPSARTSSSFRFPH-----FSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL
        L GN  LRPR A+P   A  S S R  H     FS SL RAAASDDS+GY P   E+ D   +LE+              +EP++  Q QAF L+     
Subjt:  LLGNPLLRPRTAIPSPSARTSSSFRFPH-----FSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL

Query:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        ESVD Y++ LYGSGAF+G+WLVSAIVGA+DS+P+VPK LEVVGLGYTVWFTAR+LL KESR+ELAAKIDE+K QV+G
Subjt:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

XP_022984560.1 protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita maxima]4.6e-4055.37Show/hide
Query:  LLGNPLLRPRTAIPSPSARTSSSFRFPHFS-----TSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL
        L GNP LRPR A+P   A  S S R  HF       SL RAAASDDS+GY P   E+ D   +LE+              +EP++  Q Q F L+     
Subjt:  LLGNPLLRPRTAIPSPSARTSSSFRFPHFS-----TSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL

Query:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        ESVD Y++ LYG+GAF G+WLVSAIVGA+DS+P+VPK LEVVGLGYTVWFTAR+LL KESR+ELAAK+DE+K QV+G
Subjt:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

XP_023551904.1 protein CURVATURE THYLAKOID 1D, chloroplastic-like [Cucurbita pepo subsp. pepo]1.8e-4157.06Show/hide
Query:  LLGNPLLRPRTAIPSPSARTSSSFRFPH-----FSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL
        L GNP LRPR ++P   A  S S R  H     FS SL RAAASDDS+GY P   E+ D   +LE+              +EP++  Q QAF L+     
Subjt:  LLGNPLLRPRTAIPSPSARTSSSFRFPH-----FSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL

Query:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        ESVD Y++ LYGSGAF G+WLVSAIVGA+DS+P+VPK LEVVGLGYTVWFTAR+LL KESR+ELAAKIDE+K QV+G
Subjt:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

TrEMBL top hitse value%identityAlignment
A0A0A0KZ51 CAAD domain-containing protein3.4e-4149.1Show/hide
Query:  LLGNPLLRPRTAIP-----SPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLE-------------------------------EPIQ
        L GNP LRPR A+P     S +  TS   R  HF+ SL RAAASD+S+G S  F E+ D+V+VLE                               EP++
Subjt:  LLGNPLLRPRTAIP-----SPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLE-------------------------------EPIQ

Query:  -------------------------QEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFL
                                 ++PL+  Q QAF+   D  LESVD YS+ALYG+GAFFGIWLVSAIVGAVDS+PLVPK LEVVGLGY+VWFTAR+L
Subjt:  -------------------------QEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFL

Query:  LFKESREELAAKIDEVKKQVIG
        LFKESR+ELAA+IDE+K+QV+G
Subjt:  LFKESREELAAKIDEVKKQVIG

A0A1S3C1G0 protein CURVATURE THYLAKOID 1D, chloroplastic isoform X16.4e-4050.47Show/hide
Query:  LLGNPLLRPRTAIP-----SPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLE-------------------------------EPIQ
        L G P LRPR A+P     S +  TS   R  HF+ SL RAAASD+S   SP F E+ D+V+VLE                               EP++
Subjt:  LLGNPLLRPRTAIP-----SPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLE-------------------------------EPIQ

Query:  -----------------QEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREE
                         ++PL+  Q QAF+   D  LESVD YS+ALYG+GAFFGIWLVSAIVGAVDS+PLVPK LEVVGLGY+VWFTAR+LLFKESR+E
Subjt:  -----------------QEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREE

Query:  LAAKIDEVKKQVIG
        LAA+IDE+K+QV G
Subjt:  LAAKIDEVKKQVIG

A0A5D3BCB5 Protein CURVATURE THYLAKOID 1D6.4e-4050.47Show/hide
Query:  LLGNPLLRPRTAIP-----SPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLE-------------------------------EPIQ
        L G P LRPR A+P     S +  TS   R  HF+ SL RAAASD+S   SP F E+ D+V+VLE                               EP++
Subjt:  LLGNPLLRPRTAIP-----SPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLE-------------------------------EPIQ

Query:  -----------------QEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREE
                         ++PL+  Q QAF+   D  LESVD YS+ALYG+GAFFGIWLVSAIVGAVDS+PLVPK LEVVGLGY+VWFTAR+LLFKESR+E
Subjt:  -----------------QEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREE

Query:  LAAKIDEVKKQVIG
        LAA+IDE+K+QV G
Subjt:  LAAKIDEVKKQVIG

A0A6J1ERD2 protein CURVATURE THYLAKOID 1D, chloroplastic-like4.4e-4157.06Show/hide
Query:  LLGNPLLRPRTAIPSPSARTSSSFRFPH-----FSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL
        L GN  LRPR A+P   A  S S R  H     FS SL RAAASDDS+GY P   E+ D   +LE+              +EP++  Q QAF L+     
Subjt:  LLGNPLLRPRTAIPSPSARTSSSFRFPH-----FSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL

Query:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        ESVD Y++ LYGSGAF+G+WLVSAIVGA+DS+P+VPK LEVVGLGYTVWFTAR+LL KESR+ELAAKIDE+K QV+G
Subjt:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

A0A6J1J8X3 protein CURVATURE THYLAKOID 1D, chloroplastic-like2.2e-4055.37Show/hide
Query:  LLGNPLLRPRTAIPSPSARTSSSFRFPHFS-----TSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL
        L GNP LRPR A+P   A  S S R  HF       SL RAAASDDS+GY P   E+ D   +LE+              +EP++  Q Q F L+     
Subjt:  LLGNPLLRPRTAIPSPSARTSSSFRFPHFS-----TSLLRAAASDDSDGYSPLFPEKPDAVSVLEE-----------PIQQEPLQVTQPQAFQLFKDFSL

Query:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        ESVD Y++ LYG+GAF G+WLVSAIVGA+DS+P+VPK LEVVGLGYTVWFTAR+LL KESR+ELAAK+DE+K QV+G
Subjt:  ESVDAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

SwissProt top hitse value%identityAlignment
O04616 Protein CURVATURE THYLAKOID 1A, chloroplastic5.6e-1756.34Show/hide
Query:  SVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        +V +YG GA   +WL S +VGA++SVPL+PK +E+VGLGYT WF  R+LLFK SR+ELA  I+ +KK++ G
Subjt:  SVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

Q119Z5 Glutamate--tRNA ligase1.3e-0533.93Show/hide
Query:  VSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        ++ ++ A+D +P++    E++G+ Y VWF  R+LL + +R+EL  KI+ +K+++ G
Subjt:  VSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

Q8LCA1 Protein CURVATURE THYLAKOID 1B, chloroplastic7.4e-0937.84Show/hide
Query:  DAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        D Y++          +W  + ++ A+D +PLVP  LE+VG+GYT WFT + L+FK  RE L  K+    K ++G
Subjt:  DAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

Q8LDD3 Protein CURVATURE THYLAKOID 1D, chloroplastic1.7e-2139.13Show/hide
Query:  PLLRPRTAIPSPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEEP----IQQEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAF
        PL R   ++   S     S +FP            + S G +    E  D V V  E      +    +  + QA +   D  L+S   YS+ LYGSGA 
Subjt:  PLLRPRTAIPSPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEEP----IQQEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAF

Query:  FGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
          ++L SAIV +++++PL PK +EVVGLGYT+WFT R+LLFK +REEL  K+ E+KKQV+G
Subjt:  FGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

Q9M812 Protein CURVATURE THYLAKOID 1C, chloroplastic4.2e-0422.67Show/hide
Query:  IPSPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPL-FPEKPDAVSVLEEPIQQEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVG
        +PSP   T         S   L  + +  ++  SPL     P ++S++ +   +     T        ++   +S D   +   G      +W    ++ 
Subjt:  IPSPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPL-FPEKPDAVSVLEEPIQQEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVG

Query:  AVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        A+D +P++    E+VG+ ++ WFT R+LLFK  R+EL+  + +    ++G
Subjt:  AVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

Arabidopsis top hitse value%identityAlignment
AT1G52220.1 FUNCTIONS IN: molecular_function unknown3.0e-0522.67Show/hide
Query:  IPSPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPL-FPEKPDAVSVLEEPIQQEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVG
        +PSP   T         S   L  + +  ++  SPL     P ++S++ +   +     T        ++   +S D   +   G      +W    ++ 
Subjt:  IPSPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPL-FPEKPDAVSVLEEPIQQEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIWLVSAIVG

Query:  AVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        A+D +P++    E+VG+ ++ WFT R+LLFK  R+EL+  + +    ++G
Subjt:  AVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

AT2G46820.1 photosystem I P subunit5.2e-1037.84Show/hide
Query:  DAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        D Y++          +W  + ++ A+D +PLVP  LE+VG+GYT WFT + L+FK  RE L  K+    K ++G
Subjt:  DAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

AT2G46820.2 photosystem I P subunit5.2e-1037.84Show/hide
Query:  DAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        D Y++          +W  + ++ A+D +PLVP  LE+VG+GYT WFT + L+FK  RE L  K+    K ++G
Subjt:  DAYSVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

AT4G01150.1 unknown protein4.0e-1856.34Show/hide
Query:  SVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
        +V +YG GA   +WL S +VGA++SVPL+PK +E+VGLGYT WF  R+LLFK SR+ELA  I+ +KK++ G
Subjt:  SVALYGSGAFFGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG

AT4G38100.1 unknown protein1.2e-2239.13Show/hide
Query:  PLLRPRTAIPSPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEEP----IQQEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAF
        PL R   ++   S     S +FP            + S G +    E  D V V  E      +    +  + QA +   D  L+S   YS+ LYGSGA 
Subjt:  PLLRPRTAIPSPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEEP----IQQEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAF

Query:  FGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG
          ++L SAIV +++++PL PK +EVVGLGYT+WFT R+LLFK +REEL  K+ E+KKQV+G
Subjt:  FGIWLVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGTAGAGCTCCCCCTCCTTGGAAACCCACTGCTCCGTCCCAGAACCGCCATACCCTCTCCCTCTGCTCGCACCTCCTCCAGCTTCCGATTTCCTCATTTTTCTAC
TTCGCTGCTCAGAGCCGCCGCTTCTGATGATTCCGATGGATATAGTCCTTTGTTTCCCGAAAAACCCGATGCCGTCTCAGTCTTGGAAGAACCTATACAACAAGAGCCAC
TACAGGTTACTCAACCACAGGCCTTTCAATTATTCAAGGATTTTAGTCTCGAGTCTGTTGATGCATACAGTGTGGCCCTGTATGGCAGTGGAGCTTTTTTTGGTATTTGG
TTGGTTTCAGCCATTGTTGGTGCTGTTGATTCCGTCCCATTGGTTCCCAAGTTTTTGGAAGTTGTGGGGCTTGGCTACACAGTGTGGTTCACGGCTCGCTTTTTACTATT
CAAGGAAAGTAGAGAAGAATTGGCCGCCAAGATTGATGAGGTAAAGAAGCAGGTTATTGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGTAGAGCTCCCCCTCCTTGGAAACCCACTGCTCCGTCCCAGAACCGCCATACCCTCTCCCTCTGCTCGCACCTCCTCCAGCTTCCGATTTCCTCATTTTTCTAC
TTCGCTGCTCAGAGCCGCCGCTTCTGATGATTCCGATGGATATAGTCCTTTGTTTCCCGAAAAACCCGATGCCGTCTCAGTCTTGGAAGAACCTATACAACAAGAGCCAC
TACAGGTTACTCAACCACAGGCCTTTCAATTATTCAAGGATTTTAGTCTCGAGTCTGTTGATGCATACAGTGTGGCCCTGTATGGCAGTGGAGCTTTTTTTGGTATTTGG
TTGGTTTCAGCCATTGTTGGTGCTGTTGATTCCGTCCCATTGGTTCCCAAGTTTTTGGAAGTTGTGGGGCTTGGCTACACAGTGTGGTTCACGGCTCGCTTTTTACTATT
CAAGGAAAGTAGAGAAGAATTGGCCGCCAAGATTGATGAGGTAAAGAAGCAGGTTATTGGCTAA
Protein sequenceShow/hide protein sequence
MAVELPLLGNPLLRPRTAIPSPSARTSSSFRFPHFSTSLLRAAASDDSDGYSPLFPEKPDAVSVLEEPIQQEPLQVTQPQAFQLFKDFSLESVDAYSVALYGSGAFFGIW
LVSAIVGAVDSVPLVPKFLEVVGLGYTVWFTARFLLFKESREELAAKIDEVKKQVIG