CuGenDBv2

Gene ID	Sed0022553
Organism	Sechium edule (Chayote v1)
Description	Nucleolar protein 16
Genome location	LG09:36595610..36597901
RNA-Seq Expression	Sed0022553
Synteny	Sed0022553
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7014368.1 hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.4e-93

89.12

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Query:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP
        MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHNYKSFGVLSNPNLLSVRSRT+HIVESD LQVPPSLPPSD+P
Subjt:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP

Query:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR
        DS+LDSSGSDVEEDDLKTALGKKR+ GKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRYHS  DKNPLIL R
Subjt:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

XP_022954094.1 uncharacterized protein LOC111456462 [Cucurbita moschata]

4.8e-94

89.64

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Query:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP
        MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHNYKSFGVLSNPNLLSVRSRT+HIVESD LQVPPSLPPSD+P
Subjt:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP

Query:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR
        DS+LDSSGSDVEEDDLKTALGKKR+DGKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRYHS  DKNPLIL R
Subjt:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

4.4e-95

90.67

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Query:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP
        MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHNYKSFGVLSNPNLLSVRSRT+HIVESDSLQVPPSLPPSD+P
Subjt:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP

Query:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR
        DS+LDSSGSDVEEDDLKTALGKKRKDGKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRYHS  DKNPLIL R
Subjt:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

1.7e-94

90.16

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Query:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP
        MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHNYKSFGVLSNPNLLSVRSRT+HIVESDSLQVPPSLPPSD+P
Subjt:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP

Query:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR
        DS+LDSSGSDVEEDDLKTALGKKRKDGKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRYH   DKNPLIL R
Subjt:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

XP_038898931.1 nucleolar protein 16 [Benincasa hispida]

8.8e-96

91.19

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Query:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP
        MGRSRRKY+RSR KVKVGLPKRHPNVFKPSFCMPPKLR+LLA+QFEEDP+WDDKA VIHNYKSFGV+SNPNLLSVRSRT+HIVESDSLQVPPS PPSDEP
Subjt:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP

Query:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR
        DS+LDSSGSDVEEDDLKTALGKKRKDGKS PL+PLTTIQRVH+GRL+EKYGD+YERMFMDTKLNSMQHSVATLEKLCKRYHS  DKNPLILIR
Subjt:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VLA5 Nucleolar protein 16

2.5e-88

84.97

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Query:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP
        MGRSRRKY++SR KVKVGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+K SVI NYKSFGV+SNPNLLSVRSRT+HIVESDSLQV    PPSD+P
Subjt:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP

Query:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR
        DS+LDSSGSDVEEDDLKTALGKKRKDGKS PL+PLTT+QRVH+G+L+EKYGD+Y+RMFMDTKLNSMQHSVATLEKLCKRYHS  DKNPLIL R
Subjt:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

A0A6J1DE29 Nucleolar protein 16

3.9e-89

86.08

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Query:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQV-PPSLPPSDE
        MGRSRRKY++SR KV+VGLPKR+P VFKPSFCMPPKLR+LLA+QFEE P WD+KASVIHNYKSFGVLSNPNLLSVRSRT+HIVESDSLQV PPSL PS +
Subjt:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQV-PPSLPPSDE

Query:  PDSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR
        PDS+LD SGSD EEDDLK+ALGKKRKDGKSGPLKPLTT+QRVH+GRL+EKYGD+YERMFMDTKLNSMQHSVATLEKLCKRYHS  DKNPLIL R
Subjt:  PDSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

A0A6J1GRW5 Nucleolar protein 16

2.3e-94

89.64

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Query:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP
        MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHNYKSFGVLSNPNLLSVRSRT+HIVESD LQVPPSLPPSD+P
Subjt:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP

Query:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR
        DS+LDSSGSDVEEDDLKTALGKKR+DGKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRYHS  DKNPLIL R
Subjt:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

A0A6J1JMQ4 Nucleolar protein 16

2.1e-95

90.67

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Query:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP
        MGRSRRKY+RSRAKV+VGLPKR+PNVFKPSFCMPPKLR+LLA+QFEEDP+WD+KASVIHNYKSFGVLSNPNLLSVRSRT+HIVESDSLQVPPSLPPSD+P
Subjt:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP

Query:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR
        DS+LDSSGSDVEEDDLKTALGKKRKDGKS PLKPLTTIQRVH+GRL+EKYGD++ERMFMDTKLNSMQHSVATLEKLCKRYHS  DKNPLIL R
Subjt:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

A0A6J1L083 Nucleolar protein 16

6.0e-90

87.56

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Query:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP
        MGRSRRKY+RSR KV+VGLPKRHPNVFKPSFCMPPKLR+LL +QFEEDP+WD+KASVI+NYKSFGVLSNPNLLSVRSRT+HIVESDSLQVPPS  PSD+ 
Subjt:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEP

Query:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR
        DS+LDSSGSDVEEDDLKTALGKKR+DGKSGPLKPLTTIQRVH+GRL+EKYG++YERMFMDTKLNSMQHSV TLEKLCKRYHS S KNPLIL R
Subjt:  DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

2.4e-67

64.62

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Query:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSL-PPSDE
        M RSRRKY+ SRAKV+V LPK++PN+FKP+F  PPKLRAL+ D   + P WDD+ASVI NYKSFGV+SNPNLL +R+RT+H+++ DSL VPP + PP+D+
Subjt:  MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSL-PPSDE

Query:  P---DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLIL
        P   +     SGS++EEDDLKTALGK+RKDGKS PL+PLTT+QR HI RLVEK+GD+ E M+ D KLNSMQHSVATL KLC RY  + DKNP+++
Subjt:  P---DSLLDSSGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLIL

Sequences

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CDS sequence

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ATGGGAAGATCTCGAAGAAAGTACCAGAGATCTAGGGCAAAGGTCAAGGTCGGCCTCCCCAAACGCCACCCCAATGTCTTCAAGCCATCCTTCTGTATGCCGCCGAAGCT
CCGCGCATTGCTCGCCGACCAATTCGAGGAAGATCCATCATGGGACGACAAAGCCAGTGTCATTCACAACTACAAGTCCTTTGGTGTTCTTTCTAACCCTAATTTGCTCA
GCGTTCGGTCCCGGACTAATCACATCGTTGAGAGCGACTCTCTTCAGGTCCCGCCGTCTCTGCCGCCTTCCGATGAGCCTGATTCCTTGCTTGATTCTTCCGGCAGCGAT
GTGGAAGAGGACGATTTGAAAACAGCCCTAGGAAAGAAGCGCAAAGATGGGAAATCTGGACCCCTAAAACCTTTGACCACAATTCAGCGTGTTCATATCGGTCGACTAGT
CGAGAAATATGGGGACAATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACACTGGAGAAATTATGCAAAAGATATCACAGTTTTT
CAGATAAGAATCCATTGATACTGATTCGTTAA

mRNA sequence

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TTTAGATTGGTTTTCTAAACCACCAAACCGATAAATCCAAATCTTCTTCTTCTAAACCCTAGCCACCAATTTCGCCCATCTCGTTCAATTTGCAGAGCCGCCATGGGAAG
ATCTCGAAGAAAGTACCAGAGATCTAGGGCAAAGGTCAAGGTCGGCCTCCCCAAACGCCACCCCAATGTCTTCAAGCCATCCTTCTGTATGCCGCCGAAGCTCCGCGCAT
TGCTCGCCGACCAATTCGAGGAAGATCCATCATGGGACGACAAAGCCAGTGTCATTCACAACTACAAGTCCTTTGGTGTTCTTTCTAACCCTAATTTGCTCAGCGTTCGG
TCCCGGACTAATCACATCGTTGAGAGCGACTCTCTTCAGGTCCCGCCGTCTCTGCCGCCTTCCGATGAGCCTGATTCCTTGCTTGATTCTTCCGGCAGCGATGTGGAAGA
GGACGATTTGAAAACAGCCCTAGGAAAGAAGCGCAAAGATGGGAAATCTGGACCCCTAAAACCTTTGACCACAATTCAGCGTGTTCATATCGGTCGACTAGTCGAGAAAT
ATGGGGACAATTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCATTCTGTTGCCACACTGGAGAAATTATGCAAAAGATATCACAGTTTTTCAGATAAG
AATCCATTGATACTGATTCGTTAAAGATAATGTCGATCGCCATCTTTCGAATTGTTTTGTTACATGAGGTGGAATGGTATGATCATGAAATCTAATTGAACAATATTGTC
TGAACCCAAATATATGTGAGGCTTGATAGATAGCTTATTCTCTTGCTTGCTGCATTTTTCTTCCTTTCAAGAAAATGCTCATAAGTTTCTCATGTTTAGTTAAGGTGGCA
TATAGAGCATTTTCATTTTGGGGAAATTGAGTGTTTTGCAAGAATTTTAGGTTGTATGAATATCTATAACTTAGCTACCTTTTGGGTTGCCTATGTAGGTAAATTCCCTA
ATGCATTTTTGATATTATATTGAAAACCATGAAACTGATGTTAGAATTTATTTACAAA

Protein sequence

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MGRSRRKYQRSRAKVKVGLPKRHPNVFKPSFCMPPKLRALLADQFEEDPSWDDKASVIHNYKSFGVLSNPNLLSVRSRTNHIVESDSLQVPPSLPPSDEPDSLLDSSGSD
VEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHIGRLVEKYGDNYERMFMDTKLNSMQHSVATLEKLCKRYHSFSDKNPLILIR

Sed0022553 (gene) of Chayote v1 genome