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Sed0022574 (gene) of Chayote v1 genome

Gene IDSed0022574
OrganismSechium edule (Chayote v1)
Descriptionprotein RADIALIS-like 3
Genome locationLG05:35616637..35633428
RNA-Seq ExpressionSed0022574
SyntenySed0022574
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151090.1 protein RADIALIS-like 3 [Cucumis sativus]7.2e-2576.4Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL
        MASSSLKQ RP   T WT KQNKLFEKALA     TPERWQNIA AVG KSADEV+RHYEILLEDL RIESGRVPIP YR+  N D EL
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL

XP_022952671.1 protein RADIALIS-like 3 [Cucurbita moschata]1.5e-2578.65Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL
        MASSSLKQ RP AT  WT KQNKLFEKALA     TPERW NIA AVG KSADEVKRHYEILLEDL RIESGRVPIP YR   NGD EL
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL

XP_022975322.1 protein RADIALIS-like 3 [Cucurbita maxima]4.2e-2577.53Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL
        MASSSLKQ RP AT  WT KQNKLFEKALA      PERW NIA AVG KSADEVKRHYEILLEDL RIESGRVPIP YR   NGD EL
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL

XP_023554816.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]1.1e-2578.65Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL
        MASSSLKQ RP AT  WT KQNKLFEKALA     TPERW NIA AVG KSADEVKRHYEILLEDL RIESGRVPIP YR   NGD EL
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL

XP_038888997.1 protein RADIALIS-like 3 isoform X3 [Benincasa hispida]4.2e-2575.56Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGELS
        MASSSLKQ RP   T WT KQNKLFEKALA     TPERW NIA AVG KS DEVKRHYE+LLEDL RIESGRVPIP YR  GN D ELS
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGELS

TrEMBL top hitse value%identityAlignment
A0A0A0K2A2 SANT domain-containing protein3.5e-2576.4Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL
        MASSSLKQ RP   T WT KQNKLFEKALA     TPERWQNIA AVG KSADEV+RHYEILLEDL RIESGRVPIP YR+  N D EL
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL

A0A1S3BHB0 protein RADIALIS-like 32.3e-2475.28Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL
        MASSSLKQ RP   T WT KQNKLFEKALA     TPERWQNIA AVG KSADEV+RHYEILLEDL +IESGRVPIP YR   N D EL
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL

A0A6J1C2H2 protein RADIALIS-like 34.6e-2575.27Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR----QRGNGDGEL
        MASSSLKQ RP AT  WT KQNKLFEKALA     TPERWQNIA AVG KSADEVKRHY+ILLEDL RIESGRVPIP YR      GN D EL
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR----QRGNGDGEL

A0A6J1GKW1 protein RADIALIS-like 37.0e-2678.65Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL
        MASSSLKQ RP AT  WT KQNKLFEKALA     TPERW NIA AVG KSADEVKRHYEILLEDL RIESGRVPIP YR   NGD EL
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL

A0A6J1ICR6 protein RADIALIS-like 32.0e-2577.53Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL
        MASSSLKQ RP AT  WT KQNKLFEKALA      PERW NIA AVG KSADEVKRHYEILLEDL RIESGRVPIP YR   NGD EL
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGEL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.5e-1752.75Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGN-GDGELS
        MASSS+     G   +WT KQNK FE+ALA     TP RWQN+A+ VG K+ +EVKRHYE+L++D+  IE+G VP P YR  G   +G LS
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGN-GDGELS

Q1A173 Protein RADIALIS-like 61.7e-1655Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR
        MAS+S     P     WT  QNK+FE+ALA     TP+RW N+A+AVG K+ +EVKRHY+IL+EDL  IE+GRVP+P Y+
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR

Q1G3C4 Protein RADIALIS-like 44.1e-1556.25Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALA----FTPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR
        MASSS+      +T++WT +++K FE ALA     TP+RWQ IA AVG KS +EVKRHYE+LL D+  IESGR P P YR
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALA----FTPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR

Q6NNN0 Protein RADIALIS-like 32.0e-1754.76Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGN
        MAS+S+      ++ +WT K+NKLFE+ALA     TP+RW N+A AVG KSA+EV+RHYE+L+ D+  IESGR P P YR  GN
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGN

Q8GW75 Protein RADIALIS-like 56.8e-1857.5Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR
        MASSS+      ++++WT KQNK+FE+ALA     TP+RWQN+A+AVG KSA+EVKRHY+IL+EDL  IE   VP+P Y+
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 54.8e-1957.5Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR
        MASSS+      ++++WT KQNK+FE+ALA     TP+RWQN+A+AVG KSA+EVKRHY+IL+EDL  IE   VP+P Y+
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR

AT1G75250.1 RAD-like 61.2e-1755Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR
        MAS+S     P     WT  QNK+FE+ALA     TP+RW N+A+AVG K+ +EVKRHY+IL+EDL  IE+GRVP+P Y+
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR

AT1G75250.2 RAD-like 61.2e-1755Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR
        MAS+S     P     WT  QNK+FE+ALA     TP+RW N+A+AVG K+ +EVKRHY+IL+EDL  IE+GRVP+P Y+
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR

AT2G18328.1 RAD-like 42.9e-1656.25Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALA----FTPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR
        MASSS+      +T++WT +++K FE ALA     TP+RWQ IA AVG KS +EVKRHYE+LL D+  IESGR P P YR
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALA----FTPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYR

AT4G39250.1 RAD-like 11.1e-1852.75Show/hide
Query:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGN-GDGELS
        MASSS+     G   +WT KQNK FE+ALA     TP RWQN+A+ VG K+ +EVKRHYE+L++D+  IE+G VP P YR  G   +G LS
Subjt:  MASSSLKQHRPGATTAWTVKQNKLFEKALAF----TPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGN-GDGELS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCGAGCTCTTTGAAGCAGCACCGGCCCGGGGCGACGACGGCGTGGACGGTGAAGCAAAACAAGCTGTTTGAGAAGGCATTGGCTTTTACACCCGAGAGATGGCA
GAATATCGCCGAGGCGGTCGGGAGAAAGTCGGCCGACGAAGTTAAAAGACATTATGAGATACTCTTGGAAGATCTCTGGCGGATTGAGTCTGGCCGTGTTCCTATTCCGA
TTTATAGACAAAGAGGGAATGGAGATGGAGAGTTGAGTTTTCGATGTAAGATCTTCCCCATTAATACTTTTTTCTCTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCGAGCTCTTTGAAGCAGCACCGGCCCGGGGCGACGACGGCGTGGACGGTGAAGCAAAACAAGCTGTTTGAGAAGGCATTGGCTTTTACACCCGAGAGATGGCA
GAATATCGCCGAGGCGGTCGGGAGAAAGTCGGCCGACGAAGTTAAAAGACATTATGAGATACTCTTGGAAGATCTCTGGCGGATTGAGTCTGGCCGTGTTCCTATTCCGA
TTTATAGACAAAGAGGGAATGGAGATGGAGAGTTGAGTTTTCGATGTAAGATCTTCCCCATTAATACTTTTTTCTCTAAATAA
Protein sequenceShow/hide protein sequence
MASSSLKQHRPGATTAWTVKQNKLFEKALAFTPERWQNIAEAVGRKSADEVKRHYEILLEDLWRIESGRVPIPIYRQRGNGDGELSFRCKIFPINTFFSK