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Sed0022622 (gene) of Chayote v1 genome

Gene IDSed0022622
OrganismSechium edule (Chayote v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG07:21938777..21940710
RNA-Seq ExpressionSed0022622
SyntenySed0022622
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]4.1e-3077.42Show/hide
Query:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG
        MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGVIDS+D+CEE+D +LE EY    DDEYIEEG
Subjt:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.1e-3077.42Show/hide
Query:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG
        MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGVIDS+D+CEE+D +LE EY    DDEYIEEG
Subjt:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]4.1e-3077.42Show/hide
Query:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG
        MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGVIDS+D+CEE+D +LE EY    DDEYIEEG
Subjt:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG

XP_022153198.1 uncharacterized protein LOC111020753 [Momordica charantia]4.1e-3079.35Show/hide
Query:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAHDDEYIEEG
        +Q K KFVAAKR+E ESSNTK+NE  KEVREK+SSIQCWKCKGFGHMSK+CVNKRVMVIRNGV+DSDDDCEEHDEE E      D+EYIEEG
Subjt:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAHDDEYIEEG

XP_022158838.1 uncharacterized protein LOC111025303 [Momordica charantia]1.8e-3080.43Show/hide
Query:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAHDDEYIEEG
        MQ KGKFVAAKR+E ESSNTKKNE  KEVRE +SSIQCWKCKGFGHMSK+CVNKRVMVIRNGV+DSDDDCEEHDE  E      D+EYIEEG
Subjt:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAHDDEYIEEG

TrEMBL top hitse value%identityAlignment
A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein2.0e-3077.42Show/hide
Query:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG
        MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGVIDS+D+CEE+D +LE EY    DDEYIEEG
Subjt:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG

A0A5D3C3D3 F15O4.132.0e-3077.42Show/hide
Query:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG
        MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGVIDS+D+CEE+D +LE EY    DDEYIEEG
Subjt:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG

A0A5D3C8C6 CCHC-type domain-containing protein2.0e-3077.42Show/hide
Query:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG
        MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGVIDS+D+CEE+D +LE EY    DDEYIEEG
Subjt:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG

A0A5D3DRJ1 F15O4.132.0e-3077.42Show/hide
Query:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG
        MQ +GKFVAA++VE ESSNTKK E SKEVREK+SSIQCWKCKGFGHMSK+C+NKRVMV+RNGVIDS+D+CEE+D +LE EY    DDEYIEEG
Subjt:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAH-DDEYIEEG

A0A6J1DX75 uncharacterized protein LOC1110253038.9e-3180.43Show/hide
Query:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAHDDEYIEEG
        MQ KGKFVAAKR+E ESSNTKKNE  KEVRE +SSIQCWKCKGFGHMSK+CVNKRVMVIRNGV+DSDDDCEEHDE  E      D+EYIEEG
Subjt:  MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAHDDEYIEEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACAAAAAGGAAAGTTTGTGGCTGCCAAAAGAGTAGAGGTCGAGAGCTCCAATACTAAAAAGAATGAAGTTTCAAAGGAGGTAAGGGAGAAGTCTAGTTCTATTCA
ATGTTGGAAGTGCAAAGGATTTGGGCACATGAGCAAGGAATGTGTTAATAAAAGAGTTATGGTGATAAGAAATGGTGTAATTGATTCGGATGATGATTGTGAGGAGCATG
ATGAAGAACTTGAGGCAGAATATGGAGCACATGATGATGAGTACATTGAAGAAGGAAGAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAACAAAAAGGAAAGTTTGTGGCTGCCAAAAGAGTAGAGGTCGAGAGCTCCAATACTAAAAAGAATGAAGTTTCAAAGGAGGTAAGGGAGAAGTCTAGTTCTATTCA
ATGTTGGAAGTGCAAAGGATTTGGGCACATGAGCAAGGAATGTGTTAATAAAAGAGTTATGGTGATAAGAAATGGTGTAATTGATTCGGATGATGATTGTGAGGAGCATG
ATGAAGAACTTGAGGCAGAATATGGAGCACATGATGATGAGTACATTGAAGAAGGAAGAATGTGA
Protein sequenceShow/hide protein sequence
MQQKGKFVAAKRVEVESSNTKKNEVSKEVREKSSSIQCWKCKGFGHMSKECVNKRVMVIRNGVIDSDDDCEEHDEELEAEYGAHDDEYIEEGRM