CuGenDBv2

Gene ID	Sed0022653
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase III subunit RPC8
Genome location	LG07:4450911..4458265
RNA-Seq Expression	Sed0022653
Synteny	Sed0022653
Gene Ontology terms	GO:0006384 - transcription initiation from RNA polymerase III promoter (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0016020 - membrane (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR005576 - RNA polymerase Rpb7-like , N-terminal IPR012340 - Nucleic acid-binding, OB-fold IPR013238 - RNA polymerase III, subunit Rpc25 IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily IPR045113 - RNA polymerase Rpb7-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014295.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argyrosperma]

8.8e-95

76.65

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS++EHTLR+PP +L+LPI+DAIKGELEKL LDKVVAKLGLCISVYDIRS+DGGFIF S+GA TYKVVFTLIVFRPY GEIIIGKVK+SDANGL+I+
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI
        L FFEDIYVP+HLLPSPSEFKP P N GKRRWVWDY  +GQ  +I+E DEIKFRI SI+YPAIP+ +QP + +    MEEQPKE  NVKPF+PM+VT  I
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI

Query:  DDDGLGPVSWWDGSGDVVAEAEVEEDS
        D DGLGPVSWWDGSGD  AE E EEDS
Subjt:  DDDGLGPVSWWDGSGDVVAEAEVEEDS

XP_022152296.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia]

9.1e-92

76.96

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS++EHTLR+PP +L+LPI+DAIKGELEKL LDKVVA LGLCISVYDIRS+DGGFIF S+GA TYKVVFTLIVFRPYVGEIIIGKVK+SDANGL+I+
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEE-QPKEK-SNVKPFSPMIVTGL
        L FFEDIYVP+HLLP+PSEFKP   N GKRRWVWDY  +GQ  +I+E DEIKFRI +IEYPAIP+EQPK+ +     EE QPKE  SNVK F+PMIVTG 
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEE-QPKEK-SNVKPFSPMIVTGL

Query:  IDDDGLGPVSWWDGSGDVVAEAEV--EEDS
        ID DGLGPVSWWDGSGDV  EAEV  EEDS
Subjt:  IDDDGLGPVSWWDGSGDVVAEAEV--EEDS

XP_022954042.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata]

9.7e-94

76.42

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS++EHTLR+PP +L+LPI+DAIKGELEKL LDKVVAKLGLCISVYDIRS+DGGFIF S+GA TYKVVFTLIVFRPY GEIIIGKVK+SDANGL+I+
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI
        L FFEDIYVP+HLLPSPSEFKP P N GKRRWVWDY  +GQ  +I+E DEIKFRI SI+YPAIP+ +QP + +    MEEQPKE  NVKPF+PM+VT  I
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI

Query:  DDDGLGPVSWWDGSG--DVVAEAEVEEDS
        D DGLGPVSWWDGSG  D  AEAE EEDS
Subjt:  DDDGLGPVSWWDGSG--DVVAEAEVEEDS

XP_022991804.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima]

3.7e-93

75.33

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS++EHTLR+PP +L+LPI+DAIKGELEKL LDKVVA LGLCISVYDIRS+DGGFIF S+GA TYKVVFTLIVFRPY GEIIIGKVK+SDANGL+I+
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI
        L FFEDIYVP+HLLPSPSEFKP P NSGKRRWVWDY  +GQ  +I+E DEIKFRI SI+YP IP+ +QP + +    MEEQPKE  NVKPF+PM+VT  I
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI

Query:  DDDGLGPVSWWDGSGDVVAEAEVEEDS
        D DGLGPVSWWDGSGD  AEAE E ++
Subjt:  DDDGLGPVSWWDGSGDVVAEAEVEEDS

XP_023547503.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo]

2.5e-94

76.21

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS++EHTLR+PP +L+LPI+DAIKGELEKL LDKVVA LGLCISVYDIRS+DGGFIF S+GA TYKVVFTLIVFRPY GEIIIGKVK+SDANGL+I+
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI
        L FFEDIYVP+HLLPSPSEFKP P N GKRRWVWDY  +GQ  +I+E DEIKFRI SI+YPAIP+ +QP + +    MEEQPKE  NVKPF+PM+VT  I
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI

Query:  DDDGLGPVSWWDGSGDVVAEAEVEEDS
        D DGLGPVSWWDGSGD  A+AE EEDS
Subjt:  DDDGLGPVSWWDGSGDVVAEAEVEEDS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CEN6 DNA-directed RNA polymerase III subunit RPC8 isoform X1

3.5e-89

71.68

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS++EHTLR+PP LLNLPI+DAIKGELEKL +DKVVA LGLCISVYDIRS+DGGFIF S+GA TYKVVFTLIVFRP+ GE+IIGKV++S+ NGL+I+
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLID
        L FFEDIYVPV L+PS SEF P  NN G+RRWVW YN+     +I+E+DEIKF+I SIEYPAI +EQPK+ +   PMEE+PKE  NVKPF+PM++T  +D
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLID

Query:  DDGLGPVSWWDGSGDVVAEAEVEEDS
         DGLGPVSWWDGSG+  AE EVEEDS
Subjt:  DDGLGPVSWWDGSGDVVAEAEVEEDS

A0A5A7UWI5 DNA-directed RNA polymerase III subunit RPC8 isoform X1

3.5e-89

71.68

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS++EHTLR+PP LLNLPI+DAIKGELEKL +DKVVA LGLCISVYDIRS+DGGFIF S+GA TYKVVFTLIVFRP+ GE+IIGKV++S+ NGL+I+
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLID
        L FFEDIYVPV L+PS SEF P  NN G+RRWVW YN+     +I+E+DEIKF+I SIEYPAI +EQPK+ +   PMEE+PKE  NVKPF+PM++T  +D
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLID

Query:  DDGLGPVSWWDGSGDVVAEAEVEEDS
         DGLGPVSWWDGSG+  AE EVEEDS
Subjt:  DDGLGPVSWWDGSGDVVAEAEVEEDS

A0A6J1DFX3 DNA-directed RNA polymerase III subunit RPC8 isoform X2

4.4e-92

76.96

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS++EHTLR+PP +L+LPI+DAIKGELEKL LDKVVA LGLCISVYDIRS+DGGFIF S+GA TYKVVFTLIVFRPYVGEIIIGKVK+SDANGL+I+
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEE-QPKEK-SNVKPFSPMIVTGL
        L FFEDIYVP+HLLP+PSEFKP   N GKRRWVWDY  +GQ  +I+E DEIKFRI +IEYPAIP+EQPK+ +     EE QPKE  SNVK F+PMIVTG 
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEE-QPKEK-SNVKPFSPMIVTGL

Query:  IDDDGLGPVSWWDGSGDVVAEAEV--EEDS
        ID DGLGPVSWWDGSGDV  EAEV  EEDS
Subjt:  IDDDGLGPVSWWDGSGDVVAEAEV--EEDS

A0A6J1GPX5 DNA-directed RNA polymerase III subunit RPC8

4.7e-94

76.42

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS++EHTLR+PP +L+LPI+DAIKGELEKL LDKVVAKLGLCISVYDIRS+DGGFIF S+GA TYKVVFTLIVFRPY GEIIIGKVK+SDANGL+I+
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI
        L FFEDIYVP+HLLPSPSEFKP P N GKRRWVWDY  +GQ  +I+E DEIKFRI SI+YPAIP+ +QP + +    MEEQPKE  NVKPF+PM+VT  I
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI

Query:  DDDGLGPVSWWDGSG--DVVAEAEVEEDS
        D DGLGPVSWWDGSG  D  AEAE EEDS
Subjt:  DDDGLGPVSWWDGSG--DVVAEAEVEEDS

A0A6J1JVU8 DNA-directed RNA polymerase III subunit RPC8

1.8e-93

75.33

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS++EHTLR+PP +L+LPI+DAIKGELEKL LDKVVA LGLCISVYDIRS+DGGFIF S+GA TYKVVFTLIVFRPY GEIIIGKVK+SDANGL+I+
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI
        L FFEDIYVP+HLLPSPSEFKP P NSGKRRWVWDY  +GQ  +I+E DEIKFRI SI+YP IP+ +QP + +    MEEQPKE  NVKPF+PM+VT  I
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPL-EQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLI

Query:  DDDGLGPVSWWDGSGDVVAEAEVEEDS
        D DGLGPVSWWDGSGD  AEAE E ++
Subjt:  DDDGLGPVSWWDGSGDVVAEAEVEEDS

SwissProt top hits

e value

%identity

Alignment

O94285 DNA-directed RNA polymerase III subunit rpc8

6.9e-26

31.78

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MF LS+    + + P     P  +A+  E+ K   +KV+  +GL I VYD   I  G I   +G+    VVF LI+FRP+ GE+++GK+K     G+++T
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVW----DYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVT
        + FF+DI++P  +L  P  F+P      +R WVW    +   EG  L    ++EI+F+I+S ++  I  ++ K        E        ++  SP  + 
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVW----DYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVT

Query:  GLIDDDGLGPVSWW
             DGLG  +WW
Subjt:  GLIDDDGLGPVSWW

P35718 DNA-directed RNA polymerase III subunit RPC8

2.2e-24

30.14

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MF LSK+   +R+PP   +   I AI  +L     +K++  +GLCI++YD+ +++ G +   +G+    V F  +VF+P++GEI+ G + K  A G++++
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  -LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNR--PMEEQPKEKS-----NVKPFSP
         L  F+DI++P ++L     + P      +  W+W   DE   L    N++I+FRI+   +  +  + PK+ +L     +E + + K+     N KP   
Subjt:  -LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNR--PMEEQPKEKS-----NVKPFSP

Query:  MIVTGLIDDDGLGPVSWWD
          + G    DG+G VSWW+
Subjt:  MIVTGLIDDDGLGPVSWWD

Q2T9X1 DNA-directed RNA polymerase III subunit RPC8

1.0e-29

32.56

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MF L ++  T+R+PP      + D+I  EL K L +KV+  +GLCI ++DI  ++  ++F  +GA   KV F  +VF P++ EI+IGK+K     G+ ++
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDE--GQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGL
        L FF+DI +P   L  P++F     +  ++ WVW+Y  E     L +   +E++FR+    +       P   +     EE PK++      +P  + G 
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDE--GQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGL

Query:  IDDDGLGPVSWWDGS
        I + GLG +SWW  S
Subjt:  IDDDGLGPVSWWDGS

Q9D2C6 DNA-directed RNA polymerase III subunit RPC8

3.5e-30

33.49

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MF L ++  T+R+PP      + D+I  EL K L +KVV  +GLCI ++DI  ++  ++F  +GA   KV F  +VF P++ EI+IGK+K     G+ ++
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDE--GQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGL
        L FF+DI +P   L  P++F     +  ++ WVW+Y  E     L +   +EI+FR+    +       P   +     EE PK++      +P  + G 
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDE--GQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGL

Query:  IDDDGLGPVSWW
        I + GLG +SWW
Subjt:  IDDDGLGPVSWW

Q9Y535 DNA-directed RNA polymerase III subunit RPC8

7.1e-31

33.96

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MF L ++  T+R+PP      + D+I  EL K L +KVV  +GLCI ++DI  ++  ++F  +GA   KV F  +VF P++ EI+IGK+K     G+ ++
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDE--GQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGL
        L FF+DI +P   L  P++F     +  ++ WVW+Y  E     L +   +EI+FR+    +       P   D     EE PK++      +P  + G 
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDE--GQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGL

Query:  IDDDGLGPVSWW
        I + GLG +SWW
Subjt:  IDDDGLGPVSWW

Arabidopsis top hits

e value

%identity

Alignment

AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein

1.1e-63

51.14

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS+LEH+LR+PP LLNLP+ DAIK  L+ + LDKV+A LGLC+S+YDI+S++GGF+   +GA TYKV   ++VFRP+VGE+I  K K+SDANGL++T
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLID
        L FF+DIYVP  L+P P+  +P P N  +  WVW+Y +  +   + +  +IKFR++SI YP++P E+ +                + KPF+PM+VTG +D
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLID

Query:  DDGLGPVSWWDGSGDVVAE
        DDGLGPVSWWD    V  E
Subjt:  DDGLGPVSWWDGSGDVVAE

AT1G06790.2 RNA polymerase Rpb7 N-terminal domain-containing protein

2.1e-54

49.49

Show/hide

Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MFYLS+LEH+LR+PP LLNLP+ DAIK  L+ + LDKV+A LGLC+S+YDI+S++GGF+   +GA TYKV   ++VFRP+VGE+I  K K+SDANGL++T
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVT
        L FF+DIYVP  L+P P+  +P P N  +  WVW+Y +  +   + +  +IKFR++SI YP++P E+ +                + KPF+PM+VT
Subjt:  LEFFEDIYVPVHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVT

AT5G59180.1 DNA-directed RNA polymerase II

2.8e-06

25.93

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Query:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT
        MF+   LE  ++L P      + + +  +L K +      + G  +++  I +I  G I    G  T+ V +  +VFRP+ GEI+   V   +  G    
Subjt:  MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQIT

Query:  LEFFED-----IYVPVHLLPSPSEFKPG--PNNSGKRRWVWDYNDEGQSLEIHENDEIKFRI
          FF +     I+V  HL+P   EF+ G  PN          Y     S++I +  E++ +I
Subjt:  LEFFED-----IYVPVHLLPSPSEFKPG--PNNSGKRRWVWDYNDEGQSLEIHENDEIKFRI

Sequences

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CDS sequence

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ATGTTTTACCTTAGCAAACTCGAGCACACGCTACGCTTGCCTCCATGCTTGCTTAACCTACCTATTATTGATGCTATTAAGGGTGAGCTGGAGAAACTACTCCTGGATAA
GGTGGTTGCAAAATTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGATTGATGGGGGCTTTATCTTTGCCAGTGAAGGCGCTCCAACTTACAAGGTTGTGTTCACAT
TAATTGTGTTTCGTCCATACGTTGGGGAGATAATTATTGGAAAAGTTAAAAAATCAGATGCAAATGGTTTGCAAATAACACTTGAATTTTTTGAGGACATTTATGTTCCC
GTCCATCTACTGCCCTCTCCATCTGAATTCAAGCCCGGCCCGAATAATAGTGGAAAACGCAGATGGGTATGGGACTATAATGATGAAGGTCAATCACTTGAAATACACGA
AAATGATGAGATAAAATTTAGAATTAAGAGCATTGAGTACCCTGCAATCCCACTGGAGCAGCCAAAAAAGTGTGATTTAAATCGCCCTATGGAGGAGCAGCCAAAAGAGA
AAAGTAATGTAAAACCATTTTCTCCCATGATTGTTACGGGATTAATTGATGATGATGGACTGGGACCTGTTTCATGGTGGGATGGTTCAGGAGATGTCGTTGCAGAGGCT
GAAGTCGAAGAAGATTCTTAA

mRNA sequence

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AAACCCTACAAGGTCCTTCGTCTTCCTCTCATTCCTCACGTGCTTCACCTCCTCCTTCTCACTCTTCCCGCCGGAAGGCCGCCGCCGTTCAGTGCCGCCACCGCCGTCTC
CTCTTAGCCTCAAGGAGTGTGTTTTGGTTTAAACTAAGAGATATAGACCTAAAGAACGTCCAATGTTTTACCTTAGCAAACTCGAGCACACGCTACGCTTGCCTCCATGC
TTGCTTAACCTACCTATTATTGATGCTATTAAGGGTGAGCTGGAGAAACTACTCCTGGATAAGGTGGTTGCAAAATTGGGGCTCTGTATTTCTGTTTATGATATAAGATC
GATTGATGGGGGCTTTATCTTTGCCAGTGAAGGCGCTCCAACTTACAAGGTTGTGTTCACATTAATTGTGTTTCGTCCATACGTTGGGGAGATAATTATTGGAAAAGTTA
AAAAATCAGATGCAAATGGTTTGCAAATAACACTTGAATTTTTTGAGGACATTTATGTTCCCGTCCATCTACTGCCCTCTCCATCTGAATTCAAGCCCGGCCCGAATAAT
AGTGGAAAACGCAGATGGGTATGGGACTATAATGATGAAGGTCAATCACTTGAAATACACGAAAATGATGAGATAAAATTTAGAATTAAGAGCATTGAGTACCCTGCAAT
CCCACTGGAGCAGCCAAAAAAGTGTGATTTAAATCGCCCTATGGAGGAGCAGCCAAAAGAGAAAAGTAATGTAAAACCATTTTCTCCCATGATTGTTACGGGATTAATTG
ATGATGATGGACTGGGACCTGTTTCATGGTGGGATGGTTCAGGAGATGTCGTTGCAGAGGCTGAAGTCGAAGAAGATTCTTAAGATCGACATTCCATTTTGTTGCTATGA
CAAATTGGTATTCTTTCATTCATAGATCTGTATTATACATCACTATATCACTAGGCATAGGCATGATAGTCATTAGGCACGATAGTCATTAGGCATAGTGCTCTCTTATC
TCAACTTCACATTGTAATCAAATACAAGGCTTTTCCGGCCCCTTTCAAAATTGTTTGTTATTTCTAGGTTCTAGGTTCTAGGTTAAGTTCAAGTTTTGGTTAAGCTTTAA
ACCCTCCCTTTGGACAAGGGGAGAAGAAGAAAAAATTGATATCTTTCCTGAAATGAAGTTTTAATA

Protein sequence

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MFYLSKLEHTLRLPPCLLNLPIIDAIKGELEKLLLDKVVAKLGLCISVYDIRSIDGGFIFASEGAPTYKVVFTLIVFRPYVGEIIIGKVKKSDANGLQITLEFFEDIYVP
VHLLPSPSEFKPGPNNSGKRRWVWDYNDEGQSLEIHENDEIKFRIKSIEYPAIPLEQPKKCDLNRPMEEQPKEKSNVKPFSPMIVTGLIDDDGLGPVSWWDGSGDVVAEA
EVEEDS

Sed0022653 (gene) of Chayote v1 genome