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Sed0022736 (gene) of Chayote v1 genome

Gene IDSed0022736
OrganismSechium edule (Chayote v1)
DescriptionZinc finger protein, putative
Genome locationLG12:32638672..32639034
RNA-Seq ExpressionSed0022736
SyntenySed0022736
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589714.1 Zinc finger protein 2, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2048.99Show/hide
Query:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKLADHQST
        MEF   +QLNLELVLEPSS SSS+       + RVFSCNYCKR+FYSSQALGGHQNAHKLERTLAK S           +N V+M  S+H WK       
Subjt:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKLADHQST

Query:  ISVSTTPPQ---------------------SYYHHIQDDISHLDLSLSL
        +   T PP                       ++HH  DDI HLDLSL L
Subjt:  ISVSTTPPQ---------------------SYYHHIQDDISHLDLSLSL

XP_022921390.1 zinc finger protein 7 [Cucurbita moschata]3.4e-2050Show/hide
Query:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKL------
        MEF   +QLNLELVLEPSS SSS+       + RVFSCNYCKR+FYSSQALGGHQNAHKLERTLAK S           +N V+M  S+H WK+      
Subjt:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKL------

Query:  --------ADHQSTISVSTTPPQSYYHHIQDDISHLDLSLSL
                 D              ++HH  DDI HLDLSL L
Subjt:  --------ADHQSTISVSTTPPQSYYHHIQDDISHLDLSLSL

XP_022987492.1 zinc finger protein 7-like [Cucurbita maxima]2.6e-2048.99Show/hide
Query:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKLADHQST
        MEF   +QLNLELVLEPSS SSS+       + RVFSCNYCKR+FYSSQALGGHQNAHKLERTLAK S           +N V+M  S+H WK       
Subjt:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKLADHQST

Query:  ISVSTTPPQ---------------------SYYHHIQDDISHLDLSLSL
        +   T PP                        +HH  DDI HLDLSL L
Subjt:  ISVSTTPPQ---------------------SYYHHIQDDISHLDLSLSL

XP_023516743.1 zinc finger protein 7-like [Cucurbita pepo subsp. pepo]5.9e-2049.33Show/hide
Query:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKLADHQST
        MEF   +QLNLELVLEPSS SSS+       + RVFSCNYCKR+FYSSQALGGHQNAHKLERTLAK S           +N V+M  S+H WK       
Subjt:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKLADHQST

Query:  ISVSTTPPQ---------------------SYYHHIQ-DDISHLDLSLSL
        +   T PP                       ++HH Q DDI HLDLSL L
Subjt:  ISVSTTPPQ---------------------SYYHHIQ-DDISHLDLSLSL

XP_038880343.1 zinc finger protein 3 [Benincasa hispida]3.7e-2250.34Show/hide
Query:  MEFNRR-RQLNLELVLEPSSSSSS---------SSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-------------NNFVLMNNSTH-FWKL
        MEF RR +QLNLEL+LEPSSSSSS         ++ RVFSCNYCKR+FYSSQALGGHQNAHKLERTLAK S             NN ++ N+S+H  W +
Subjt:  MEFNRR-RQLNLELVLEPSSSSSS---------SSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-------------NNFVLMNNSTH-FWKL

Query:  ADHQSTISVSTTPPQ------------SYYHHIQDD---ISHLDLSLSL
            +T + +  PP              ++HH QDD   I HLDLSL L
Subjt:  ADHQSTISVSTTPPQ------------SYYHHIQDD---ISHLDLSLSL

TrEMBL top hitse value%identityAlignment
A0A1S2YQA0 zinc finger protein 27.8e-1849.25Show/hide
Query:  NRRRQLNLELVLEPSSSSSSSS---------RRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKISNNFVLMNNSTHFWKLADHQSTISVST---TPPQ
        +    LNL+L+LEPSSSSSSSS          RVFSCNYC+R+FYSSQALGGHQNAHKLERTLAK S        S  + + A+ +S  S S+      Q
Subjt:  NRRRQLNLELVLEPSSSSSSSS---------RRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKISNNFVLMNNSTHFWKLADHQSTISVST---TPPQ

Query:  SYYH---------------HIQDDISHLDLSLSL
        +Y H               H+Q+DIS LDLSL L
Subjt:  SYYH---------------HIQDDISHLDLSLSL

A0A2Z6LQ98 C2H2-type domain-containing protein1.7e-1746.72Show/hide
Query:  NRRRQLNLELVLEPSSSSSSSS-----RRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKISNNFVLMNNSTHFWKLADH-------------------
        N    LNL+LVLEPSSSSSSSS     +R+FSCNYC+R+FYSSQALGGHQNAHKLERTLAK S        S+++ +L +H                   
Subjt:  NRRRQLNLELVLEPSSSSSSSS-----RRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKISNNFVLMNNSTHFWKLADH-------------------

Query:  ------QSTISVSTTPPQSYYHHIQDDISHLDLSLSL
              +   S S     +   H+Q+DIS LDLSL L
Subjt:  ------QSTISVSTTPPQSYYHHIQDDISHLDLSLSL

A0A6J1E5I0 zinc finger protein 71.7e-2050Show/hide
Query:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKL------
        MEF   +QLNLELVLEPSS SSS+       + RVFSCNYCKR+FYSSQALGGHQNAHKLERTLAK S           +N V+M  S+H WK+      
Subjt:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKL------

Query:  --------ADHQSTISVSTTPPQSYYHHIQDDISHLDLSLSL
                 D              ++HH  DDI HLDLSL L
Subjt:  --------ADHQSTISVSTTPPQSYYHHIQDDISHLDLSLSL

A0A6J1JAI3 zinc finger protein 7-like1.3e-2048.99Show/hide
Query:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKLADHQST
        MEF   +QLNLELVLEPSS SSS+       + RVFSCNYCKR+FYSSQALGGHQNAHKLERTLAK S           +N V+M  S+H WK       
Subjt:  MEFNRRRQLNLELVLEPSSSSSSS-------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKIS-----------NNFVLMNNSTHFWKLADHQST

Query:  ISVSTTPPQ---------------------SYYHHIQDDISHLDLSLSL
        +   T PP                        +HH  DDI HLDLSL L
Subjt:  ISVSTTPPQ---------------------SYYHHIQDDISHLDLSLSL

A0A6J1KNT5 zinc finger protein 2-like5.9e-1846.26Show/hide
Query:  MEFNRRRQLNLELVLEPSSSSSS---------SSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKISNNF---------VLMNNSTHFWKLADHQST
        MEF +  QLNL L LEPSSSSSS         S +RV+ CNYC+R+FYSSQALGGHQNAHKLERTLAK +             +  NSTH WK+    + 
Subjt:  MEFNRRRQLNLELVLEPSSSSSS---------SSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKISNNF---------VLMNNSTHFWKLADHQST

Query:  ISVSTTP-------------------PQSYYHHIQDDISHLDLSLSL
          +   P                   P  ++HH QDDI HLDLSL L
Subjt:  ISVSTTP-------------------PQSYYHHIQDDISHLDLSLSL

SwissProt top hitse value%identityAlignment
Q39261 Zinc finger protein 22.8e-1764.94Show/hide
Query:  RRRQLNLELVLEPSSSSSSSSR-----------RVFSCNYCKREFYSSQALGGHQNAHKLERTLAKISNNFVLMNNS
        +  QLNLELVLEPSS SSSSS            RVFSCNYC+R+FYSSQALGGHQNAHKLERTLAK S      +N+
Subjt:  RRRQLNLELVLEPSSSSSSSSR-----------RVFSCNYCKREFYSSQALGGHQNAHKLERTLAKISNNFVLMNNS

Q39262 Zinc finger protein 31.2e-1071.43Show/hide
Query:  SSSSSSSSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK
        + S++S+ +++FSCNYC+R FYSSQALGGHQNAHK ERTLAK
Subjt:  SSSSSSSSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK

Q39263 Zinc finger protein 41.4e-1155.26Show/hide
Query:  MEFNRRRQLNLE-----LVLEPSSSSSSS------------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK
        + FN     NL+     L L  SS+S SS            S+RVFSCNYC+R+FYSSQALGGHQNAHK ERTLAK
Subjt:  MEFNRRRQLNLE-----LVLEPSSSSSSS------------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK

Q39266 Zinc finger protein 71.2e-1068.18Show/hide
Query:  EPSSSSSSSSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK
        +  S+   ++ RVFSCNYC+R+FYSSQALGGHQNAHK ERT+AK
Subjt:  EPSSSSSSSSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK

Q42485 Zinc finger protein 15.2e-1162.3Show/hide
Query:  QLNLELVLEPSSSSSS---------SSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK
        +LNL    + SSSS+S         +  RVFSCNYC+R+FYSSQALGGHQNAHK ERTLAK
Subjt:  QLNLELVLEPSSSSSS---------SSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK

Arabidopsis top hitse value%identityAlignment
AT1G24625.1 zinc finger protein 78.2e-1268.18Show/hide
Query:  EPSSSSSSSSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK
        +  S+   ++ RVFSCNYC+R+FYSSQALGGHQNAHK ERT+AK
Subjt:  EPSSSSSSSSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK

AT1G66140.1 zinc finger protein 49.7e-1355.26Show/hide
Query:  MEFNRRRQLNLE-----LVLEPSSSSSSS------------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK
        + FN     NL+     L L  SS+S SS            S+RVFSCNYC+R+FYSSQALGGHQNAHK ERTLAK
Subjt:  MEFNRRRQLNLE-----LVLEPSSSSSSS------------SRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK

AT1G80730.1 zinc-finger protein 13.7e-1262.3Show/hide
Query:  QLNLELVLEPSSSSSS---------SSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK
        +LNL    + SSSS+S         +  RVFSCNYC+R+FYSSQALGGHQNAHK ERTLAK
Subjt:  QLNLELVLEPSSSSSS---------SSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK

AT5G10970.1 C2H2 and C2HC zinc fingers superfamily protein2.2e-1261.29Show/hide
Query:  QLNLEL---------VLEPS-SSSSSSSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK
        QLN EL         V+ PS + S+S+ +++FSCNYC+R FYSSQALGGHQNAHK ERTLAK
Subjt:  QLNLEL---------VLEPS-SSSSSSSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAK

AT5G57520.1 zinc finger protein 22.0e-1864.94Show/hide
Query:  RRRQLNLELVLEPSSSSSSSSR-----------RVFSCNYCKREFYSSQALGGHQNAHKLERTLAKISNNFVLMNNS
        +  QLNLELVLEPSS SSSSS            RVFSCNYC+R+FYSSQALGGHQNAHKLERTLAK S      +N+
Subjt:  RRRQLNLELVLEPSSSSSSSSR-----------RVFSCNYCKREFYSSQALGGHQNAHKLERTLAKISNNFVLMNNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTAACCGCCGCCGCCAACTGAACCTCGAGCTGGTTCTAGAACCTTCTTCTTCTTCTTCCTCGTCGTCGCGAAGGGTTTTCTCATGCAACTATTGCAAGAGAGA
GTTTTATAGCTCACAGGCTTTGGGAGGGCACCAAAATGCTCACAAACTAGAAAGAACTTTGGCCAAGATTAGCAATAATTTTGTGTTGATGAATAATTCAACCCATTTCT
GGAAATTAGCTGATCATCAGAGTACCATTTCAGTTTCAACAACTCCACCTCAAAGTTATTATCATCACATTCAAGATGATATTTCTCACCTTGACTTGTCTTTGAGCCTC
TGA
mRNA sequenceShow/hide mRNA sequence
CTTCTTAATTCTTCAATTCTTTCCTTCTCCATGGAGTTTAACCGCCGCCGCCAACTGAACCTCGAGCTGGTTCTAGAACCTTCTTCTTCTTCTTCCTCGTCGTCGCGAAG
GGTTTTCTCATGCAACTATTGCAAGAGAGAGTTTTATAGCTCACAGGCTTTGGGAGGGCACCAAAATGCTCACAAACTAGAAAGAACTTTGGCCAAGATTAGCAATAATT
TTGTGTTGATGAATAATTCAACCCATTTCTGGAAATTAGCTGATCATCAGAGTACCATTTCAGTTTCAACAACTCCACCTCAAAGTTATTATCATCACATTCAAGATGAT
ATTTCTCACCTTGACTTGTCTTTGAGCCTCTGA
Protein sequenceShow/hide protein sequence
MEFNRRRQLNLELVLEPSSSSSSSSRRVFSCNYCKREFYSSQALGGHQNAHKLERTLAKISNNFVLMNNSTHFWKLADHQSTISVSTTPPQSYYHHIQDDISHLDLSLSL